RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 KRTAP4-3Q9BYR4 195 aa8.01□□□□□ -1.13
COL9A3-213ENST00000489045 LINC01558Q9Y6Z2 57 aa8.01□□□□□ -1.13
COL9A3-213ENST00000489045 MT4P47944 62 aa7.96□□□□□ -1.14
COL9A3-213ENST00000489045 HMCN1Q96RW7 5635 aa7.92□□□□□ -1.14
COL9A3-213ENST00000489045 UQCR11O14957 56 aa7.85□□□□□ -1.15
COL9A3-213ENST00000489045 KRTAP12-3P60328 96 aa7.85□□□□□ -1.15
COL9A3-213ENST00000489045 KRTAP5-4Q6L8H1 288 aa7.85□□□□□ -1.15
COL9A3-213ENST00000489045 TMEM258P61165 79 aa7.83□□□□□ -1.16
COL9A3-213ENST00000489045 KRTAP4-7Q9BYR0 210 aa7.8□□□□□ -1.16
COL9A3-213ENST00000489045 KRTAP4-6Q9BYQ5 205 aa7.72□□□□□ -1.17
COL9A3-213ENST00000489045 MIR22HGQ0VDD5 57 aa7.66□□□□□ -1.18
COL9A3-213ENST00000489045 AHNAK2Q8IVF2 5795 aa7.65□□□□□ -1.18
COL9A3-213ENST00000489045 KRTAP25-1Q3LHN0 102 aa7.63□□□□□ -1.19
COL9A3-213ENST00000489045 K7ERS5 55 aa7.53□□□□□ -1.2
COL9A3-213ENST00000489045 KRTAP5-10Q6L8G5 202 aa7.53□□□□□ -1.2
COL9A3-213ENST00000489045 KRTAP5-5Q701N2 237 aaPredicted RBP7.51□□□□□ -1.21
COL9A3-213ENST00000489045 PSPHP1O15172 72 aa7.46□□□□□ -1.22
COL9A3-213ENST00000489045 KRTAP20-2Q3LI61 65 aa7.43□□□□□ -1.22
COL9A3-213ENST00000489045 V9GYY9 64 aa7.43□□□□□ -1.22
COL9A3-213ENST00000489045 LOC100996750A0A140TA64 210 aa7.39□□□□□ -1.23
COL9A3-213ENST00000489045 Q1T7F1 81 aa7.38□□□□□ -1.23
COL9A3-213ENST00000489045 SPRR5A0A1B0GTR4 108 aa7.36□□□□□ -1.23
COL9A3-213ENST00000489045 KRTAP5-3Q6L8H2 238 aa7.35□□□□□ -1.23
COL9A3-213ENST00000489045 KRTAP19-4Q3LI73 84 aa7.34□□□□□ -1.23
COL9A3-213ENST00000489045 KRTAP12-4P60329 112 aa7.33□□□□□ -1.24
COL9A3-213ENST00000489045 KRTAP23-1A1A580 65 aa7.32□□□□□ -1.24
COL9A3-213ENST00000489045 KRTAP15-1Q3LI76 137 aa7.29□□□□□ -1.24
COL9A3-213ENST00000489045 KRTAP5-7Q6L8G8 165 aa7.24□□□□□ -1.25
COL9A3-213ENST00000489045 LCE3CQ5T5A8 94 aa7.21□□□□□ -1.26
COL9A3-213ENST00000489045 A6NED7 52 aa7.19□□□□□ -1.26
COL9A3-213ENST00000489045 PCP4P48539 62 aa7.18□□□□□ -1.26
COL9A3-213ENST00000489045 SYNE1Q8NF91 8797 aaKnown RBP7.17□□□□□ -1.26
COL9A3-213ENST00000489045 CDC42SE1Q9NRR8 79 aa7.12□□□□□ -1.27
COL9A3-213ENST00000489045 ROMO1P60602 79 aa7.01□□□□□ -1.29
COL9A3-213ENST00000489045 MT1AP04731 61 aa6.96□□□□□ -1.3
COL9A3-213ENST00000489045 RPS28P62857 69 aaKnown RBP6.93□□□□□ -1.3
COL9A3-213ENST00000489045 KRTAP6-1Q3LI64 71 aa6.93□□□□□ -1.3
COL9A3-213ENST00000489045 KRTAP5-2Q701N4 177 aa6.86□□□□□ -1.31
COL9A3-213ENST00000489045 KRTAP9-6A8MVA2 160 aa6.82□□□□□ -1.32
COL9A3-213ENST00000489045 KRTAP4-11Q9BYQ6 195 aa6.79□□□□□ -1.32
COL9A3-213ENST00000489045 KRTAP9-4Q9BYQ2 154 aa6.73□□□□□ -1.33
COL9A3-213ENST00000489045 KRTAP6-2Q3LI66 62 aa6.64□□□□□ -1.35
COL9A3-213ENST00000489045 KRTAP5-8O75690 187 aa6.57□□□□□ -1.36
COL9A3-213ENST00000489045 OBSCNQ5VST9 7968 aa6.4□□□□□ -1.38
COL9A3-213ENST00000489045 MT3P25713 68 aa6.36□□□□□ -1.39
COL9A3-213ENST00000489045 MUC5ACP98088 5654 aa6.33□□□□□ -1.4
COL9A3-213ENST00000489045 MUC5BQ9HC84 5762 aaPredicted RBP6.31□□□□□ -1.4
COL9A3-213ENST00000489045 AHNAKQ09666 5890 aaKnown RBP6.3□□□□□ -1.4
COL9A3-213ENST00000489045 KRTAP9-9Q9BYP9 154 aa6.24□□□□□ -1.41
COL9A3-213ENST00000489045 KRTAP5-1Q6L8H4 278 aa6.18□□□□□ -1.42
COL9A3-213ENST00000489045 BRK1Q8WUW1 75 aa6.04□□□□□ -1.44
COL9A3-213ENST00000489045 LCE1EQ5T753 118 aa5.86□□□□□ -1.47
COL9A3-213ENST00000489045 PRO0628Q9UI54 55 aa5.83□□□□□ -1.48
COL9A3-213ENST00000489045 PMAIP1Q13794 54 aa5.73□□□□□ -1.49
COL9A3-213ENST00000489045 KRTAP4-2Q9BYR5 136 aa5.57□□□□□ -1.52
COL9A3-213ENST00000489045 LCE1BQ5T7P3 118 aa5.55□□□□□ -1.52
COL9A3-213ENST00000489045 PRAC1Q96KF2 57 aa5.49□□□□□ -1.53
COL9A3-213ENST00000489045 LCE1CQ5T751 118 aa5.44□□□□□ -1.54
COL9A3-213ENST00000489045 KTN1-AS1Q86SY8 53 aa5.41□□□□□ -1.54
COL9A3-213ENST00000489045 LCE3DQ9BYE3 92 aa5.17□□□□□ -1.58
COL9A3-213ENST00000489045 KRTAP4-12Q9BQ66 201 aa5.09□□□□□ -1.59
COL9A3-213ENST00000489045 SVIPQ8NHG7 77 aa5.04□□□□□ -1.6
COL9A3-213ENST00000489045 KRTAP5-11Q6L8G4 156 aa4.95□□□□□ -1.62
COL9A3-213ENST00000489045 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.94□□□□□ -1.62
COL9A3-213ENST00000489045 LCE3EQ5T5B0 92 aa4.85□□□□□ -1.63
COL9A3-213ENST00000489045 LCE1FQ5T754 118 aa4.81□□□□□ -1.64
COL9A3-213ENST00000489045 LUZP6Q538Z0 58 aa4.79□□□□□ -1.64
COL9A3-213ENST00000489045 KRTAP21-2Q3LI59 83 aa4.56□□□□□ -1.68
COL9A3-213ENST00000489045 PHGR1C9JFL3 82 aa4.4□□□□□ -1.71
COL9A3-213ENST00000489045 KRTAP4-4Q9BYR3 166 aa4.21□□□□□ -1.74
COL9A3-213ENST00000489045 NDUFAF8A1L188 74 aa4.08□□□□□ -1.76
COL9A3-213ENST00000489045 MUC19Q7Z5P9 8384 aa3.95□□□□□ -1.78
COL9A3-213ENST00000489045 A0A0A0MQY5 61 aa3.74□□□□□ -1.81
COL9A3-213ENST00000489045 PRM1P04553 51 aa3.59□□□□□ -1.83
COL9A3-213ENST00000489045 INE1O15225 51 aa3.56□□□□□ -1.84
COL9A3-213ENST00000489045 H3BS24 57 aa3.34□□□□□ -1.87
COL9A3-213ENST00000489045 KRTAP21-1Q3LI58 79 aa3.33□□□□□ -1.88
COL9A3-213ENST00000489045 MUC16Q8WXI7 14507 aa2.8□□□□□ -1.96
Retrieved 78 of 20,778 RNA–protein pairs in 48.5 ms