RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 KRTAP2-1Q9BYU5 128 aa2.17□□□□□ -2.06
VPS13D-209ENST00000487188 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.15□□□□□ -2.07
VPS13D-209ENST00000487188 KRTAP19-6Q3LI70 58 aa2.15□□□□□ -2.07
VPS13D-209ENST00000487188 KRTAP4-7Q9BYR0 210 aa2.14□□□□□ -2.07
VPS13D-209ENST00000487188 KRTAP4-8A0A0G2JLE6 195 aa2.13□□□□□ -2.07
VPS13D-209ENST00000487188 MACF1Q9UPN3 7388 aaKnown RBP2.12□□□□□ -2.07
VPS13D-209ENST00000487188 KRTAP12-4P60329 112 aa2.09□□□□□ -2.07
VPS13D-209ENST00000487188 KRTAP9-7A8MTY7 169 aa2.09□□□□□ -2.08
VPS13D-209ENST00000487188 HMCN1Q96RW7 5635 aa2.09□□□□□ -2.08
VPS13D-209ENST00000487188 SYNE2Q8WXH0 6885 aaKnown RBP2.08□□□□□ -2.08
VPS13D-209ENST00000487188 KRTAP19-4Q3LI73 84 aa2.07□□□□□ -2.08
VPS13D-209ENST00000487188 KRTAP19-7Q3SYF9 63 aa2.05□□□□□ -2.08
VPS13D-209ENST00000487188 MT1LQ93083 61 aa2.05□□□□□ -2.08
VPS13D-209ENST00000487188 KMT2DO14686 5537 aa2.04□□□□□ -2.08
VPS13D-209ENST00000487188 KRTAP9-9Q9BYP9 154 aa2.03□□□□□ -2.08
VPS13D-209ENST00000487188 KRTAP9-4Q9BYQ2 154 aa2.03□□□□□ -2.08
VPS13D-209ENST00000487188 MT1EP04732 61 aa2.01□□□□□ -2.09
VPS13D-209ENST00000487188 SPRR2FQ96RM1 72 aa2.01□□□□□ -2.09
VPS13D-209ENST00000487188 KRTAP6-3Q3LI67 103 aa2.01□□□□□ -2.09
VPS13D-209ENST00000487188 MUC12Q9UKN1 5478 aa2□□□□□ -2.09
VPS13D-209ENST00000487188 MT1GP13640 62 aa2□□□□□ -2.09
VPS13D-209ENST00000487188 KRTAP5-9P26371 169 aa1.96□□□□□ -2.1
VPS13D-209ENST00000487188 NEBP20929 6669 aa1.96□□□□□ -2.1
VPS13D-209ENST00000487188 KRTAP4-3Q9BYR4 195 aa1.95□□□□□ -2.1
VPS13D-209ENST00000487188 LCE3BQ5TA77 95 aa1.95□□□□□ -2.1
VPS13D-209ENST00000487188 SPRR2EP22531 72 aa1.94□□□□□ -2.1
VPS13D-209ENST00000487188 SPRR2BP35325 72 aa1.94□□□□□ -2.1
VPS13D-209ENST00000487188 SPRR2AP35326 72 aa1.94□□□□□ -2.1
VPS13D-209ENST00000487188 MDN1Q9NU22 5596 aa1.93□□□□□ -2.1
VPS13D-209ENST00000487188 KRTAP4-9Q9BYQ8 210 aa1.9□□□□□ -2.11
VPS13D-209ENST00000487188 PRM1P04553 51 aa1.89□□□□□ -2.11
VPS13D-209ENST00000487188 SYNE1Q8NF91 8797 aaKnown RBP1.88□□□□□ -2.11
VPS13D-209ENST00000487188 KRTAP4-2Q9BYR5 136 aa1.88□□□□□ -2.11
VPS13D-209ENST00000487188 MT1MQ8N339 61 aa1.88□□□□□ -2.11
VPS13D-209ENST00000487188 SPRR2DP22532 72 aa1.88□□□□□ -2.11
VPS13D-209ENST00000487188 LCE3DQ9BYE3 92 aa1.87□□□□□ -2.11
VPS13D-209ENST00000487188 LCE3EQ5T5B0 92 aa1.86□□□□□ -2.11
VPS13D-209ENST00000487188 KRTAP19-3Q7Z4W3 81 aa1.86□□□□□ -2.11
VPS13D-209ENST00000487188 LCE1AQ5T7P2 110 aa1.83□□□□□ -2.12
VPS13D-209ENST00000487188 MUC5BQ9HC84 5762 aaPredicted RBP1.83□□□□□ -2.12
VPS13D-209ENST00000487188 LCE1DQ5T752 114 aa1.83□□□□□ -2.12
VPS13D-209ENST00000487188 KRTAP20-1Q3LI63 56 aa1.82□□□□□ -2.12
VPS13D-209ENST00000487188 MT1AP04731 61 aa1.8□□□□□ -2.12
VPS13D-209ENST00000487188 KRTAP4-11Q9BYQ6 195 aa1.79□□□□□ -2.12
VPS13D-209ENST00000487188 LCE4AQ5TA78 99 aa1.76□□□□□ -2.13
VPS13D-209ENST00000487188 LCE5AQ5TCM9 118 aa1.75□□□□□ -2.13
VPS13D-209ENST00000487188 DSTQ03001 7570 aaKnown RBP1.75□□□□□ -2.13
VPS13D-209ENST00000487188 KRTAP6-1Q3LI64 71 aa1.75□□□□□ -2.13
VPS13D-209ENST00000487188 KRTAP5-5Q701N2 237 aaPredicted RBP1.74□□□□□ -2.13
VPS13D-209ENST00000487188 KRTAP2-2Q9BYT5 123 aa1.73□□□□□ -2.13
VPS13D-209ENST00000487188 KRTAP6-2Q3LI66 62 aa1.73□□□□□ -2.13
VPS13D-209ENST00000487188 KRTAP5-3Q6L8H2 238 aa1.71□□□□□ -2.14
VPS13D-209ENST00000487188 OBSCNQ5VST9 7968 aa1.66□□□□□ -2.14
VPS13D-209ENST00000487188 MT4P47944 62 aa1.66□□□□□ -2.14
VPS13D-209ENST00000487188 KRTAP5-4Q6L8H1 288 aa1.59□□□□□ -2.15
VPS13D-209ENST00000487188 MT3P25713 68 aa1.58□□□□□ -2.16
VPS13D-209ENST00000487188 LCE1EQ5T753 118 aa1.56□□□□□ -2.16
VPS13D-209ENST00000487188 GPR98Q8WXG9 6306 aa1.55□□□□□ -2.16
VPS13D-209ENST00000487188 LCE1FQ5T754 118 aa1.54□□□□□ -2.16
VPS13D-209ENST00000487188 AHNAK2Q8IVF2 5795 aa1.51□□□□□ -2.17
VPS13D-209ENST00000487188 KRTAP5-10Q6L8G5 202 aa1.48□□□□□ -2.17
VPS13D-209ENST00000487188 KRTAP20-2Q3LI61 65 aa1.47□□□□□ -2.17
VPS13D-209ENST00000487188 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.42□□□□□ -2.18
VPS13D-209ENST00000487188 KRTAP5-7Q6L8G8 165 aa1.41□□□□□ -2.18
VPS13D-209ENST00000487188 KRTAP5-2Q701N4 177 aa1.41□□□□□ -2.18
VPS13D-209ENST00000487188 LCE1BQ5T7P3 118 aa1.38□□□□□ -2.19
VPS13D-209ENST00000487188 KRTAP5-8O75690 187 aa1.31□□□□□ -2.2
VPS13D-209ENST00000487188 MUC5ACP98088 5654 aa1.3□□□□□ -2.2
VPS13D-209ENST00000487188 AHNAKQ09666 5890 aaKnown RBP1.29□□□□□ -2.2
VPS13D-209ENST00000487188 MUC19Q7Z5P9 8384 aa1.28□□□□□ -2.2
VPS13D-209ENST00000487188 KRTAP5-11Q6L8G4 156 aa1.27□□□□□ -2.21
VPS13D-209ENST00000487188 KRTAP5-1Q6L8H4 278 aa1.25□□□□□ -2.21
VPS13D-209ENST00000487188 LCE1CQ5T751 118 aa1.18□□□□□ -2.22
VPS13D-209ENST00000487188 KRTAP21-1Q3LI58 79 aa1.12□□□□□ -2.23
VPS13D-209ENST00000487188 KRTAP4-4Q9BYR3 166 aa1.1□□□□□ -2.23
VPS13D-209ENST00000487188 KRTAP21-2Q3LI59 83 aa1.06□□□□□ -2.24
VPS13D-209ENST00000487188 PHGR1C9JFL3 82 aa0.92□□□□□ -2.26
VPS13D-209ENST00000487188 MUC16Q8WXI7 14507 aa0.62□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 179 ms