RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	SPATA8	Q6RVD6	105 aa		3.9	□□□□□ -1.79
HMGN1-215	ENST00000485550	SPINT4	Q6UDR6	99 aa		3.9	□□□□□ -1.79
HMGN1-215	ENST00000485550	SERP2	Q8N6R1	65 aa		3.9	□□□□□ -1.79
HMGN1-215	ENST00000485550	SEC61G	P60059	68 aa		3.89	□□□□□ -1.79
HMGN1-215	ENST00000485550	SERP1	Q9Y6X1	66 aa		3.89	□□□□□ -1.79
HMGN1-215	ENST00000485550	CYSTM1	Q9H1C7	97 aa		3.88	□□□□□ -1.79
HMGN1-215	ENST00000485550	KRTAP5-7	Q6L8G8	165 aa		3.87	□□□□□ -1.79
HMGN1-215	ENST00000485550	KRTAP19-5	Q3LI72	72 aa		3.85	□□□□□ -1.79
HMGN1-215	ENST00000485550		A0A1B0GU33	70 aa		3.84	□□□□□ -1.79
HMGN1-215	ENST00000485550	KRTAP4-4	Q9BYR3	166 aa		3.84	□□□□□ -1.79
HMGN1-215	ENST00000485550	KRTAP5-4	Q6L8H1	288 aa		3.83	□□□□□ -1.8
HMGN1-215	ENST00000485550	MT1G	P13640	62 aa		3.81	□□□□□ -1.8
HMGN1-215	ENST00000485550	KRTAP12-1	P59990	96 aa		3.81	□□□□□ -1.8
HMGN1-215	ENST00000485550	SPRR5	A0A1B0GTR4	108 aa		3.8	□□□□□ -1.8
HMGN1-215	ENST00000485550	KRTAP9-6	A8MVA2	160 aa		3.78	□□□□□ -1.8
HMGN1-215	ENST00000485550	PP632	Q6XCG6	107 aa		3.77	□□□□□ -1.81
HMGN1-215	ENST00000485550	MT1M	Q8N339	61 aa		3.76	□□□□□ -1.81
HMGN1-215	ENST00000485550	COX7C	P15954	63 aa		3.75	□□□□□ -1.81
HMGN1-215	ENST00000485550		A8MU10	97 aa		3.74	□□□□□ -1.81
HMGN1-215	ENST00000485550	MT1L	Q93083	61 aa		3.74	□□□□□ -1.81
HMGN1-215	ENST00000485550		H7BZZ5	65 aa		3.73	□□□□□ -1.81
HMGN1-215	ENST00000485550	SMIM26	A0A096LP01	95 aa		3.72	□□□□□ -1.81
HMGN1-215	ENST00000485550	LCE1F	Q5T754	118 aa		3.72	□□□□□ -1.81
HMGN1-215	ENST00000485550	KRTAP4-3	Q9BYR4	195 aa		3.72	□□□□□ -1.81
HMGN1-215	ENST00000485550		A0A1B0GU69	56 aa		3.71	□□□□□ -1.82
HMGN1-215	ENST00000485550	LCE3A	Q5TA76	89 aa		3.71	□□□□□ -1.82
HMGN1-215	ENST00000485550	C10orf95	Q9H7T3	257 aa		3.71	□□□□□ -1.82
HMGN1-215	ENST00000485550	TNP1	P09430	55 aa		3.67	□□□□□ -1.82
HMGN1-215	ENST00000485550	KRTAP20-2	Q3LI61	65 aa		3.6	□□□□□ -1.83
HMGN1-215	ENST00000485550	KRTAP12-3	P60328	96 aa		3.55	□□□□□ -1.84
HMGN1-215	ENST00000485550	ANAPC13	Q9BS18	74 aa		3.55	□□□□□ -1.84
HMGN1-215	ENST00000485550	PRR15L	Q9BU68	103 aa		3.54	□□□□□ -1.84
HMGN1-215	ENST00000485550	OBSCN	Q5VST9	7968 aa		3.53	□□□□□ -1.84
HMGN1-215	ENST00000485550	CCDC179	H3BU77	68 aa		3.52	□□□□□ -1.85
HMGN1-215	ENST00000485550	LCE3C	Q5T5A8	94 aa		3.49	□□□□□ -1.85
HMGN1-215	ENST00000485550	LINC01558	Q9Y6Z2	57 aa		3.49	□□□□□ -1.85
HMGN1-215	ENST00000485550	KRTAP12-4	P60329	112 aa		3.44	□□□□□ -1.86
HMGN1-215	ENST00000485550	UQCR11	O14957	56 aa		3.43	□□□□□ -1.86
HMGN1-215	ENST00000485550	ATP5E	P56381	51 aa	Predicted RBP	3.43	□□□□□ -1.86
HMGN1-215	ENST00000485550	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.43	□□□□□ -1.86
HMGN1-215	ENST00000485550	SYNE1	Q8NF91	8797 aa	Known RBP	3.42	□□□□□ -1.86
HMGN1-215	ENST00000485550	NDUFAF8	A1L188	74 aa		3.39	□□□□□ -1.87
HMGN1-215	ENST00000485550	KRTAP25-1	Q3LHN0	102 aa		3.38	□□□□□ -1.87
HMGN1-215	ENST00000485550	MIR22HG	Q0VDD5	57 aa		3.35	□□□□□ -1.87
HMGN1-215	ENST00000485550	PRAC1	Q96KF2	57 aa		3.34	□□□□□ -1.87
HMGN1-215	ENST00000485550	KRTAP5-8	O75690	187 aa		3.32	□□□□□ -1.88
HMGN1-215	ENST00000485550	TMEM258	P61165	79 aa		3.31	□□□□□ -1.88
HMGN1-215	ENST00000485550		K7ERS5	55 aa		3.3	□□□□□ -1.88
HMGN1-215	ENST00000485550	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.27	□□□□□ -1.89
HMGN1-215	ENST00000485550	MUC5AC	P98088	5654 aa		3.27	□□□□□ -1.89
HMGN1-215	ENST00000485550	AHNAK	Q09666	5890 aa	Known RBP	3.25	□□□□□ -1.89
HMGN1-215	ENST00000485550	PSPHP1	O15172	72 aa		3.25	□□□□□ -1.89
HMGN1-215	ENST00000485550	KRTAP5-2	Q701N4	177 aa		3.23	□□□□□ -1.89
HMGN1-215	ENST00000485550	KRTAP6-1	Q3LI64	71 aa		3.18	□□□□□ -1.9
HMGN1-215	ENST00000485550	MT1A	P04731	61 aa		3.17	□□□□□ -1.9
HMGN1-215	ENST00000485550	LCE3E	Q5T5B0	92 aa		3.17	□□□□□ -1.9
HMGN1-215	ENST00000485550		V9GYY9	64 aa		3.17	□□□□□ -1.9
HMGN1-215	ENST00000485550		Q1T7F1	81 aa		3.14	□□□□□ -1.91
HMGN1-215	ENST00000485550		A6NED7	52 aa		3.11	□□□□□ -1.91
HMGN1-215	ENST00000485550	CDC42SE1	Q9NRR8	79 aa		3.11	□□□□□ -1.91
HMGN1-215	ENST00000485550	RPS28	P62857	69 aa	Known RBP	3.07	□□□□□ -1.92
HMGN1-215	ENST00000485550	KRTAP6-2	Q3LI66	62 aa		3.07	□□□□□ -1.92
HMGN1-215	ENST00000485550	ROMO1	P60602	79 aa		3.06	□□□□□ -1.92
HMGN1-215	ENST00000485550	LCE1C	Q5T751	118 aa		2.79	□□□□□ -1.96
HMGN1-215	ENST00000485550	LCE1B	Q5T7P3	118 aa		2.79	□□□□□ -1.96
HMGN1-215	ENST00000485550	LCE3D	Q9BYE3	92 aa		2.54	□□□□□ -2
HMGN1-215	ENST00000485550	BRK1	Q8WUW1	75 aa		2.51	□□□□□ -2.01
HMGN1-215	ENST00000485550	PHGR1	C9JFL3	82 aa		2.36	□□□□□ -2.03
HMGN1-215	ENST00000485550	PMAIP1	Q13794	54 aa		2.34	□□□□□ -2.03
HMGN1-215	ENST00000485550	MUC19	Q7Z5P9	8384 aa		2.33	□□□□□ -2.04
HMGN1-215	ENST00000485550	KRTAP21-2	Q3LI59	83 aa		2.09	□□□□□ -2.07
HMGN1-215	ENST00000485550	PRO0628	Q9UI54	55 aa		1.98	□□□□□ -2.09
HMGN1-215	ENST00000485550	LUZP6	Q538Z0	58 aa		1.95	□□□□□ -2.1
HMGN1-215	ENST00000485550	KTN1-AS1	Q86SY8	53 aa		1.95	□□□□□ -2.1
HMGN1-215	ENST00000485550	KRTAP21-1	Q3LI58	79 aa		1.76	□□□□□ -2.13
HMGN1-215	ENST00000485550	PRM1	P04553	51 aa		1.58	□□□□□ -2.16
HMGN1-215	ENST00000485550	MUC16	Q8WXI7	14507 aa		1.29	□□□□□ -2.2
HMGN1-215	ENST00000485550	INE1	O15225	51 aa		1.04	□□□□□ -2.24

Retrieved 78 of 20,778 RNA–protein pairs in 6.3 ms