RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 HSD52Q0P140 79 aa1.71□□□□□ -2.14
PTPN4-210ENST00000485247 SPINT4Q6UDR6 99 aa1.71□□□□□ -2.14
PTPN4-210ENST00000485247 ANAPC13Q9BS18 74 aa1.69□□□□□ -2.14
PTPN4-210ENST00000485247 C10orf95Q9H7T3 257 aa1.66□□□□□ -2.14
PTPN4-210ENST00000485247 SPCS1Q9Y6A9 102 aa1.65□□□□□ -2.15
PTPN4-210ENST00000485247 TSTD3H0UI37 97 aa1.64□□□□□ -2.15
PTPN4-210ENST00000485247 S100A6P06703 90 aa1.64□□□□□ -2.15
PTPN4-210ENST00000485247 KRTAP21-2Q3LI59 83 aa1.64□□□□□ -2.15
PTPN4-210ENST00000485247 K7ERS5 55 aa1.63□□□□□ -2.15
PTPN4-210ENST00000485247 S100A1P23297 94 aa1.63□□□□□ -2.15
PTPN4-210ENST00000485247 UBL5Q9BZL1 73 aa1.63□□□□□ -2.15
PTPN4-210ENST00000485247 A6NED7 52 aa1.62□□□□□ -2.15
PTPN4-210ENST00000485247 H0Y9P7 68 aa1.62□□□□□ -2.15
PTPN4-210ENST00000485247 MP68P56378 58 aa1.62□□□□□ -2.15
PTPN4-210ENST00000485247 KRTAP25-1Q3LHN0 102 aa1.62□□□□□ -2.15
PTPN4-210ENST00000485247 ATOX1O00244 68 aa1.6□□□□□ -2.15
PTPN4-210ENST00000485247 KRTAP13-4Q3LI77 160 aa1.6□□□□□ -2.15
PTPN4-210ENST00000485247 H3BT86 120 aa1.59□□□□□ -2.15
PTPN4-210ENST00000485247 UQCRQO14949 82 aa1.58□□□□□ -2.16
PTPN4-210ENST00000485247 KRTAP6-1Q3LI64 71 aa1.57□□□□□ -2.16
PTPN4-210ENST00000485247 KRTAP6-2Q3LI66 62 aa1.57□□□□□ -2.16
PTPN4-210ENST00000485247 LINC00208Q96KT6 92 aa1.57□□□□□ -2.16
PTPN4-210ENST00000485247 UQCR10Q9UDW1 63 aa1.57□□□□□ -2.16
PTPN4-210ENST00000485247 DMAC1Q96GE9 116 aa1.56□□□□□ -2.16
PTPN4-210ENST00000485247 LOC105371267A0A1B0GV96 52 aa1.55□□□□□ -2.16
PTPN4-210ENST00000485247 A0A1B0GU33 70 aa1.54□□□□□ -2.16
PTPN4-210ENST00000485247 KRTAP12-3P60328 96 aa1.54□□□□□ -2.16
PTPN4-210ENST00000485247 TAX1BP3O14907 124 aa1.53□□□□□ -2.16
PTPN4-210ENST00000485247 MT1AP04731 61 aa1.53□□□□□ -2.16
PTPN4-210ENST00000485247 M0R143 59 aa1.51□□□□□ -2.17
PTPN4-210ENST00000485247 PYY3Q5JQD4 70 aa1.51□□□□□ -2.17
PTPN4-210ENST00000485247 TRAV7A0A075B6U4 112 aa1.5□□□□□ -2.17
PTPN4-210ENST00000485247 SPTSSBQ8NFR3 76 aa1.5□□□□□ -2.17
PTPN4-210ENST00000485247 TNP1P09430 55 aa1.49□□□□□ -2.17
PTPN4-210ENST00000485247 HIST1H4AP62805 103 aaKnown RBP1.47□□□□□ -2.17
PTPN4-210ENST00000485247 KRTAP12-1P59990 96 aa1.46□□□□□ -2.18
PTPN4-210ENST00000485247 ACYP2P14621 99 aa1.45□□□□□ -2.18
PTPN4-210ENST00000485247 CHKB-CPT1BH3BT56 60 aa1.44□□□□□ -2.18
PTPN4-210ENST00000485247 SPATA8Q6RVD6 105 aa1.44□□□□□ -2.18
PTPN4-210ENST00000485247 A0A1B0GV90 55 aa1.39□□□□□ -2.19
PTPN4-210ENST00000485247 H3BPC8 53 aa1.39□□□□□ -2.19
PTPN4-210ENST00000485247 ATP5EP2Q5VTU8 51 aa1.37□□□□□ -2.19
PTPN4-210ENST00000485247 SCGB1A1P11684 91 aa1.36□□□□□ -2.19
PTPN4-210ENST00000485247 PHGR1C9JFL3 82 aa1.34□□□□□ -2.19
PTPN4-210ENST00000485247 SMIM6P0DI80 62 aa1.34□□□□□ -2.19
PTPN4-210ENST00000485247 PMAIP1Q13794 54 aa1.34□□□□□ -2.19
PTPN4-210ENST00000485247 ETDBQ3ZM63 59 aa1.33□□□□□ -2.2
PTPN4-210ENST00000485247 SERP1Q9Y6X1 66 aa1.33□□□□□ -2.2
PTPN4-210ENST00000485247 F8W1H4 67 aa1.26□□□□□ -2.21
PTPN4-210ENST00000485247 LINC00643Q86TS7 51 aa1.25□□□□□ -2.21
PTPN4-210ENST00000485247 TMEM258P61165 79 aa1.24□□□□□ -2.21
PTPN4-210ENST00000485247 COL5A1-AS1Q5SY13 56 aa1.24□□□□□ -2.21
PTPN4-210ENST00000485247 KTN1-AS1Q86SY8 53 aa1.24□□□□□ -2.21
PTPN4-210ENST00000485247 GTF2H5Q6ZYL4 71 aa1.22□□□□□ -2.21
PTPN4-210ENST00000485247 SERP2Q8N6R1 65 aa1.21□□□□□ -2.22
PTPN4-210ENST00000485247 COA5Q86WW8 74 aa1.2□□□□□ -2.22
PTPN4-210ENST00000485247 SNURFQ9Y675 71 aa1.19□□□□□ -2.22
PTPN4-210ENST00000485247 Q1T7F1 81 aa1.17□□□□□ -2.22
PTPN4-210ENST00000485247 CCDC179H3BU77 68 aa1.16□□□□□ -2.22
PTPN4-210ENST00000485247 A0A1B0GU69 56 aa1.15□□□□□ -2.23
PTPN4-210ENST00000485247 K7ERU9 68 aa1.14□□□□□ -2.23
PTPN4-210ENST00000485247 H7BZZ5 65 aa1.13□□□□□ -2.23
PTPN4-210ENST00000485247 SMIM20Q8N5G0 67 aa1.09□□□□□ -2.23
PTPN4-210ENST00000485247 PRR15LQ9BU68 103 aa1.08□□□□□ -2.24
PTPN4-210ENST00000485247 J3QR89 54 aa1.06□□□□□ -2.24
PTPN4-210ENST00000485247 COX7CP15954 63 aa1.06□□□□□ -2.24
PTPN4-210ENST00000485247 RPS28P62857 69 aaKnown RBP1.01□□□□□ -2.25
PTPN4-210ENST00000485247 KRTAP21-1Q3LI58 79 aa1.01□□□□□ -2.25
PTPN4-210ENST00000485247 ROMO1P60602 79 aa0.97□□□□□ -2.25
PTPN4-210ENST00000485247 UQCR11O14957 56 aa0.95□□□□□ -2.26
PTPN4-210ENST00000485247 CDC42SE1Q9NRR8 79 aa0.95□□□□□ -2.26
PTPN4-210ENST00000485247 BRK1Q8WUW1 75 aa0.93□□□□□ -2.26
PTPN4-210ENST00000485247 INE1O15225 51 aa0.91□□□□□ -2.26
PTPN4-210ENST00000485247 LINC01558Q9Y6Z2 57 aa0.91□□□□□ -2.26
PTPN4-210ENST00000485247 ATP5EP56381 51 aaPredicted RBP0.9□□□□□ -2.27
PTPN4-210ENST00000485247 MIR22HGQ0VDD5 57 aa0.9□□□□□ -2.27
PTPN4-210ENST00000485247 MUC16Q8WXI7 14507 aa0.76□□□□□ -2.29
PTPN4-210ENST00000485247 PRM1P04553 51 aa0.44□□□□□ -2.34
Retrieved 78 of 20,778 RNA–protein pairs in 154.5 ms