RNA–Protein interactions for RNA: ENST00000479625.1

GPNMB-211, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 788 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-211ENST00000479625 J3QR89 54 aa3.36□□□□□ -1.87
GPNMB-211ENST00000479625 K7ERU9 68 aa3.36□□□□□ -1.87
GPNMB-211ENST00000479625 KRTAP13-4Q3LI77 160 aa3.33□□□□□ -1.88
GPNMB-211ENST00000479625 LCE3AQ5TA76 89 aa3.33□□□□□ -1.88
GPNMB-211ENST00000479625 ETDBQ3ZM63 59 aa3.32□□□□□ -1.88
GPNMB-211ENST00000479625 MP68P56378 58 aa3.31□□□□□ -1.88
GPNMB-211ENST00000479625 OCR1Q9BZK8 76 aa3.28□□□□□ -1.88
GPNMB-211ENST00000479625 ATP5EP2Q5VTU8 51 aa3.27□□□□□ -1.89
GPNMB-211ENST00000479625 TRAV7A0A075B6U4 112 aa3.26□□□□□ -1.89
GPNMB-211ENST00000479625 AHNAKQ09666 5890 aaKnown RBP3.25□□□□□ -1.89
GPNMB-211ENST00000479625 SYNE1Q8NF91 8797 aaKnown RBP3.25□□□□□ -1.89
GPNMB-211ENST00000479625 MUC5ACP98088 5654 aa3.25□□□□□ -1.89
GPNMB-211ENST00000479625 KRTAP5-5Q701N2 237 aaPredicted RBP3.24□□□□□ -1.89
GPNMB-211ENST00000479625 FAM240AA0A1B0GVK7 77 aa3.22□□□□□ -1.89
GPNMB-211ENST00000479625 C10orf95Q9H7T3 257 aa3.22□□□□□ -1.89
GPNMB-211ENST00000479625 KRTAP12-4P60329 112 aa3.2□□□□□ -1.9
GPNMB-211ENST00000479625 SPTSSBQ8NFR3 76 aa3.2□□□□□ -1.9
GPNMB-211ENST00000479625 MUC5BQ9HC84 5762 aaPredicted RBP3.2□□□□□ -1.9
GPNMB-211ENST00000479625 SCGB1A1P11684 91 aa3.19□□□□□ -1.9
GPNMB-211ENST00000479625 A8MU10 97 aa3.18□□□□□ -1.9
GPNMB-211ENST00000479625 H3BPC8 53 aa3.18□□□□□ -1.9
GPNMB-211ENST00000479625 ACYP2P14621 99 aa3.18□□□□□ -1.9
GPNMB-211ENST00000479625 LINC00643Q86TS7 51 aa3.18□□□□□ -1.9
GPNMB-211ENST00000479625 CHKB-CPT1BH3BT56 60 aa3.15□□□□□ -1.91
GPNMB-211ENST00000479625 SPINT4Q6UDR6 99 aa3.13□□□□□ -1.91
GPNMB-211ENST00000479625 KRTAP5-8O75690 187 aa3.11□□□□□ -1.91
GPNMB-211ENST00000479625 ANAPC13Q9BS18 74 aa3.09□□□□□ -1.91
GPNMB-211ENST00000479625 KRTAP12-1P59990 96 aa3.08□□□□□ -1.92
GPNMB-211ENST00000479625 SPATA8Q6RVD6 105 aa3.08□□□□□ -1.92
GPNMB-211ENST00000479625 KRTAP5-2Q701N4 177 aa3.06□□□□□ -1.92
GPNMB-211ENST00000479625 SMIM20Q8N5G0 67 aa3.04□□□□□ -1.92
GPNMB-211ENST00000479625 KRTAP12-3P60328 96 aa3.03□□□□□ -1.92
GPNMB-211ENST00000479625 SERP2Q8N6R1 65 aa3.02□□□□□ -1.93
GPNMB-211ENST00000479625 COX7CP15954 63 aa3.01□□□□□ -1.93
GPNMB-211ENST00000479625 TNP1P09430 55 aa3□□□□□ -1.93
GPNMB-211ENST00000479625 CCDC179H3BU77 68 aa2.99□□□□□ -1.93
GPNMB-211ENST00000479625 A0A1B0GU33 70 aa2.93□□□□□ -1.94
GPNMB-211ENST00000479625 KRTAP6-1Q3LI64 71 aa2.92□□□□□ -1.94
GPNMB-211ENST00000479625 SERP1Q9Y6X1 66 aa2.92□□□□□ -1.94
GPNMB-211ENST00000479625 TMEM258P61165 79 aa2.91□□□□□ -1.94
GPNMB-211ENST00000479625 SNURFQ9Y675 71 aa2.91□□□□□ -1.94
GPNMB-211ENST00000479625 SEC61GP60059 68 aa2.9□□□□□ -1.95
GPNMB-211ENST00000479625 H7BZZ5 65 aa2.87□□□□□ -1.95
GPNMB-211ENST00000479625 MT1AP04731 61 aa2.87□□□□□ -1.95
GPNMB-211ENST00000479625 ATP5EP56381 51 aaPredicted RBP2.87□□□□□ -1.95
GPNMB-211ENST00000479625 RPS28P62857 69 aaKnown RBP2.86□□□□□ -1.95
GPNMB-211ENST00000479625 COA5Q86WW8 74 aa2.86□□□□□ -1.95
GPNMB-211ENST00000479625 SPANXA2-OT1Q8N9U9 137 aa2.86□□□□□ -1.95
GPNMB-211ENST00000479625 KRTAP6-2Q3LI66 62 aa2.85□□□□□ -1.95
GPNMB-211ENST00000479625 LCE1CQ5T751 118 aa2.85□□□□□ -1.95
GPNMB-211ENST00000479625 LCE1BQ5T7P3 118 aa2.85□□□□□ -1.95
GPNMB-211ENST00000479625 SMIM26A0A096LP01 95 aa2.82□□□□□ -1.96
GPNMB-211ENST00000479625 LCE3DQ9BYE3 92 aa2.73□□□□□ -1.97
GPNMB-211ENST00000479625 KRTAP25-1Q3LHN0 102 aa2.72□□□□□ -1.97
GPNMB-211ENST00000479625 V9GYY9 64 aa2.72□□□□□ -1.97
GPNMB-211ENST00000479625 A0A1B0GU69 56 aa2.7□□□□□ -1.98
GPNMB-211ENST00000479625 Q1T7F1 81 aa2.68□□□□□ -1.98
GPNMB-211ENST00000479625 LINC01558Q9Y6Z2 57 aa2.64□□□□□ -1.99
GPNMB-211ENST00000479625 PSPHP1O15172 72 aa2.63□□□□□ -1.99
GPNMB-211ENST00000479625 PRR15LQ9BU68 103 aa2.62□□□□□ -1.99
GPNMB-211ENST00000479625 BRK1Q8WUW1 75 aa2.58□□□□□ -2
GPNMB-211ENST00000479625 A6NED7 52 aa2.57□□□□□ -2
GPNMB-211ENST00000479625 PRO0628Q9UI54 55 aa2.56□□□□□ -2
GPNMB-211ENST00000479625 UQCR11O14957 56 aa2.53□□□□□ -2
GPNMB-211ENST00000479625 CDC42SE1Q9NRR8 79 aa2.52□□□□□ -2.01
GPNMB-211ENST00000479625 MIR22HGQ0VDD5 57 aa2.5□□□□□ -2.01
GPNMB-211ENST00000479625 PMAIP1Q13794 54 aa2.46□□□□□ -2.02
GPNMB-211ENST00000479625 K7ERS5 55 aa2.43□□□□□ -2.02
GPNMB-211ENST00000479625 MUC19Q7Z5P9 8384 aa2.37□□□□□ -2.03
GPNMB-211ENST00000479625 KTN1-AS1Q86SY8 53 aa2.36□□□□□ -2.03
GPNMB-211ENST00000479625 ROMO1P60602 79 aa2.28□□□□□ -2.04
GPNMB-211ENST00000479625 PHGR1C9JFL3 82 aa2.21□□□□□ -2.06
GPNMB-211ENST00000479625 KRTAP21-2Q3LI59 83 aa2.06□□□□□ -2.08
GPNMB-211ENST00000479625 LUZP6Q538Z0 58 aa1.9□□□□□ -2.11
GPNMB-211ENST00000479625 KRTAP21-1Q3LI58 79 aa1.64□□□□□ -2.15
GPNMB-211ENST00000479625 INE1O15225 51 aa1.56□□□□□ -2.16
GPNMB-211ENST00000479625 MUC16Q8WXI7 14507 aa1.31□□□□□ -2.2
GPNMB-211ENST00000479625 PRM1P04553 51 aa1.18□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 45.1 ms