RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 LOC100996750A0A140TA64 210 aa6.82□□□□□ -1.32
SDF4-206ENST00000478938 CRCT1Q9UGL9 99 aa6.76□□□□□ -1.33
SDF4-206ENST00000478938 SSPOA2VEC9 5147 aa6.76□□□□□ -1.33
SDF4-206ENST00000478938 MT1EP04732 61 aa6.72□□□□□ -1.33
SDF4-206ENST00000478938 KRTAP19-4Q3LI73 84 aa6.71□□□□□ -1.34
SDF4-206ENST00000478938 KRTAP19-6Q3LI70 58 aa6.7□□□□□ -1.34
SDF4-206ENST00000478938 KRTAP9-6A0A140TA67 174 aa6.65□□□□□ -1.34
SDF4-206ENST00000478938 KRTAP4-3Q9BYR4 195 aa6.64□□□□□ -1.35
SDF4-206ENST00000478938 MT1GP13640 62 aa6.62□□□□□ -1.35
SDF4-206ENST00000478938 KRTAP4-9Q9BYQ8 210 aa6.5□□□□□ -1.37
SDF4-206ENST00000478938 FCGBPQ9Y6R7 5405 aaPredicted RBP6.5□□□□□ -1.37
SDF4-206ENST00000478938 KRTAP9-7A8MTY7 169 aa6.44□□□□□ -1.38
SDF4-206ENST00000478938 PRM1P04553 51 aa6.42□□□□□ -1.38
SDF4-206ENST00000478938 LCE3BQ5TA77 95 aa6.39□□□□□ -1.39
SDF4-206ENST00000478938 KRTAP6-3Q3LI67 103 aa6.31□□□□□ -1.4
SDF4-206ENST00000478938 SYNE1Q8NF91 8797 aaKnown RBP6.29□□□□□ -1.4
SDF4-206ENST00000478938 KRTAP5-5Q701N2 237 aaPredicted RBP6.29□□□□□ -1.4
SDF4-206ENST00000478938 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.26□□□□□ -1.41
SDF4-206ENST00000478938 MACF1Q9UPN3 7388 aaKnown RBP6.25□□□□□ -1.41
SDF4-206ENST00000478938 MUC12Q9UKN1 5478 aa6.25□□□□□ -1.41
SDF4-206ENST00000478938 MT1MQ8N339 61 aa6.23□□□□□ -1.41
SDF4-206ENST00000478938 SYNE2Q8WXH0 6885 aaKnown RBP6.22□□□□□ -1.41
SDF4-206ENST00000478938 LCE3DQ9BYE3 92 aa6.16□□□□□ -1.42
SDF4-206ENST00000478938 DSTQ03001 7570 aaKnown RBP6.16□□□□□ -1.42
SDF4-206ENST00000478938 LCE3EQ5T5B0 92 aa6.15□□□□□ -1.42
SDF4-206ENST00000478938 LCE1AQ5T7P2 110 aa6.15□□□□□ -1.42
SDF4-206ENST00000478938 MT1AP04731 61 aa6.15□□□□□ -1.42
SDF4-206ENST00000478938 KRTAP2-2Q9BYT5 123 aa6.12□□□□□ -1.43
SDF4-206ENST00000478938 KRTAP19-3Q7Z4W3 81 aa6.06□□□□□ -1.44
SDF4-206ENST00000478938 KRTAP5-9P26371 169 aa5.97□□□□□ -1.45
SDF4-206ENST00000478938 KRTAP6-1Q3LI64 71 aa5.93□□□□□ -1.46
SDF4-206ENST00000478938 SPRR2FQ96RM1 72 aa5.91□□□□□ -1.46
SDF4-206ENST00000478938 KRTAP6-2Q3LI66 62 aa5.91□□□□□ -1.46
SDF4-206ENST00000478938 MDN1Q9NU22 5596 aa5.86□□□□□ -1.47
SDF4-206ENST00000478938 LCE5AQ5TCM9 118 aa5.77□□□□□ -1.49
SDF4-206ENST00000478938 LCE1EQ5T753 118 aa5.75□□□□□ -1.49
SDF4-206ENST00000478938 SPRR2EP22531 72 aa5.71□□□□□ -1.5
SDF4-206ENST00000478938 SPRR2BP35325 72 aa5.71□□□□□ -1.5
SDF4-206ENST00000478938 SPRR2AP35326 72 aa5.71□□□□□ -1.5
SDF4-206ENST00000478938 OBSCNQ5VST9 7968 aa5.7□□□□□ -1.5
SDF4-206ENST00000478938 NEBP20929 6669 aa5.67□□□□□ -1.5
SDF4-206ENST00000478938 LCE1DQ5T752 114 aa5.53□□□□□ -1.52
SDF4-206ENST00000478938 SPRR2DP22532 72 aa5.52□□□□□ -1.53
SDF4-206ENST00000478938 KRTAP20-1Q3LI63 56 aa5.36□□□□□ -1.55
SDF4-206ENST00000478938 KRTAP9-4Q9BYQ2 154 aa5.27□□□□□ -1.57
SDF4-206ENST00000478938 MT3P25713 68 aa5.03□□□□□ -1.6
SDF4-206ENST00000478938 LCE4AQ5TA78 99 aa4.93□□□□□ -1.62
SDF4-206ENST00000478938 KRTAP5-4Q6L8H1 288 aa4.9□□□□□ -1.62
SDF4-206ENST00000478938 KRTAP4-11Q9BYQ6 195 aa4.8□□□□□ -1.64
SDF4-206ENST00000478938 MT4P47944 62 aa4.76□□□□□ -1.65
SDF4-206ENST00000478938 LCE1FQ5T754 118 aa4.71□□□□□ -1.66
SDF4-206ENST00000478938 GPR98Q8WXG9 6306 aa4.69□□□□□ -1.66
SDF4-206ENST00000478938 KRTAP4-6Q9BYQ5 205 aa4.66□□□□□ -1.66
SDF4-206ENST00000478938 HMCN1Q96RW7 5635 aa4.66□□□□□ -1.66
SDF4-206ENST00000478938 KRTAP20-2Q3LI61 65 aa4.59□□□□□ -1.67
SDF4-206ENST00000478938 MUC5ACP98088 5654 aa4.58□□□□□ -1.68
SDF4-206ENST00000478938 KRTAP5-3Q6L8H2 238 aa4.43□□□□□ -1.7
SDF4-206ENST00000478938 KRTAP5-10Q6L8G5 202 aa4.4□□□□□ -1.71
SDF4-206ENST00000478938 KRTAP5-2Q701N4 177 aa4.39□□□□□ -1.71
SDF4-206ENST00000478938 AHNAK2Q8IVF2 5795 aa4.3□□□□□ -1.72
SDF4-206ENST00000478938 MUC19Q7Z5P9 8384 aa4.23□□□□□ -1.73
SDF4-206ENST00000478938 MUC5BQ9HC84 5762 aaPredicted RBP4.2□□□□□ -1.74
SDF4-206ENST00000478938 KRTAP5-1Q6L8H4 278 aa4.13□□□□□ -1.75
SDF4-206ENST00000478938 KRTAP9-9Q9BYP9 154 aa4.12□□□□□ -1.75
SDF4-206ENST00000478938 LCE1BQ5T7P3 118 aa4.11□□□□□ -1.75
SDF4-206ENST00000478938 KRTAP21-1Q3LI58 79 aa4.05□□□□□ -1.76
SDF4-206ENST00000478938 AHNAKQ09666 5890 aaKnown RBP4.02□□□□□ -1.77
SDF4-206ENST00000478938 KRTAP5-7Q6L8G8 165 aa4□□□□□ -1.77
SDF4-206ENST00000478938 KRTAP5-8O75690 187 aa3.91□□□□□ -1.78
SDF4-206ENST00000478938 LCE1CQ5T751 118 aa3.89□□□□□ -1.79
SDF4-206ENST00000478938 KRTAP4-12Q9BQ66 201 aa3.81□□□□□ -1.8
SDF4-206ENST00000478938 KRTAP4-2Q9BYR5 136 aa3.74□□□□□ -1.81
SDF4-206ENST00000478938 KRTAP21-2Q3LI59 83 aa3.73□□□□□ -1.81
SDF4-206ENST00000478938 KRTAP4-4Q9BYR3 166 aa3.63□□□□□ -1.83
SDF4-206ENST00000478938 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.49□□□□□ -1.85
SDF4-206ENST00000478938 KRTAP5-11Q6L8G4 156 aa3.21□□□□□ -1.9
SDF4-206ENST00000478938 PHGR1C9JFL3 82 aa2.75□□□□□ -1.97
SDF4-206ENST00000478938 MUC16Q8WXI7 14507 aa2.03□□□□□ -2.08
Retrieved 78 of 20,778 RNA–protein pairs in 11.5 ms