RNA–Protein interactions for RNA: ENST00000477421.2

COL27A1-204, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 2

Gene COL27A1, Length 3,991 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-204ENST00000477421 KRTAP2-2Q9BYT5 123 aa3.85□□□□□ -1.79
COL27A1-204ENST00000477421 FCGBPQ9Y6R7 5405 aaPredicted RBP3.8□□□□□ -1.8
COL27A1-204ENST00000477421 MT1GP13640 62 aa3.8□□□□□ -1.8
COL27A1-204ENST00000477421 LCE1FQ5T754 118 aa3.78□□□□□ -1.8
COL27A1-204ENST00000477421 MT1LQ93083 61 aa3.73□□□□□ -1.81
COL27A1-204ENST00000477421 MT1EP04732 61 aa3.71□□□□□ -1.81
COL27A1-204ENST00000477421 KRTAP19-7Q3SYF9 63 aa3.7□□□□□ -1.82
COL27A1-204ENST00000477421 KRTAP4-3Q9BYR4 195 aa3.7□□□□□ -1.82
COL27A1-204ENST00000477421 LCE3BQ5TA77 95 aa3.67□□□□□ -1.82
COL27A1-204ENST00000477421 LOC100996750A0A140TA64 210 aa3.66□□□□□ -1.82
COL27A1-204ENST00000477421 KRTAP9-9Q9BYP9 154 aa3.66□□□□□ -1.82
COL27A1-204ENST00000477421 SYNE2Q8WXH0 6885 aaKnown RBP3.61□□□□□ -1.83
COL27A1-204ENST00000477421 KRTAP9-6A0A140TA67 174 aa3.61□□□□□ -1.83
COL27A1-204ENST00000477421 KRTAP9-7A8MTY7 169 aa3.61□□□□□ -1.83
COL27A1-204ENST00000477421 LCE4AQ5TA78 99 aa3.61□□□□□ -1.83
COL27A1-204ENST00000477421 KRTAP19-3Q7Z4W3 81 aa3.61□□□□□ -1.83
COL27A1-204ENST00000477421 KRTAP19-6Q3LI70 58 aa3.6□□□□□ -1.83
COL27A1-204ENST00000477421 MUC12Q9UKN1 5478 aa3.6□□□□□ -1.83
COL27A1-204ENST00000477421 KRTAP9-6A8MVA2 160 aa3.59□□□□□ -1.83
COL27A1-204ENST00000477421 SPRR2EP22531 72 aa3.57□□□□□ -1.84
COL27A1-204ENST00000477421 SPRR2BP35325 72 aa3.57□□□□□ -1.84
COL27A1-204ENST00000477421 SPRR2AP35326 72 aa3.57□□□□□ -1.84
COL27A1-204ENST00000477421 KRTAP12-4P60329 112 aa3.57□□□□□ -1.84
COL27A1-204ENST00000477421 LCE1EQ5T753 118 aa3.55□□□□□ -1.84
COL27A1-204ENST00000477421 MT1MQ8N339 61 aa3.54□□□□□ -1.84
COL27A1-204ENST00000477421 LCE1AQ5T7P2 110 aa3.53□□□□□ -1.84
COL27A1-204ENST00000477421 SSPOA2VEC9 5147 aa3.52□□□□□ -1.85
COL27A1-204ENST00000477421 MT3P25713 68 aa3.45□□□□□ -1.86
COL27A1-204ENST00000477421 KRTAP9-2Q9BYQ4 174 aa3.43□□□□□ -1.86
COL27A1-204ENST00000477421 SPRR2DP22532 72 aa3.41□□□□□ -1.86
COL27A1-204ENST00000477421 MACF1Q9UPN3 7388 aaKnown RBP3.4□□□□□ -1.87
COL27A1-204ENST00000477421 KRTAP4-9Q9BYQ8 210 aa3.38□□□□□ -1.87
COL27A1-204ENST00000477421 LCE1DQ5T752 114 aa3.37□□□□□ -1.87
COL27A1-204ENST00000477421 KRTAP2-3P0C7H8 128 aa3.36□□□□□ -1.87
COL27A1-204ENST00000477421 KRTAP2-4Q9BYR9 128 aa3.36□□□□□ -1.87
COL27A1-204ENST00000477421 KRTAP2-1Q9BYU5 128 aa3.36□□□□□ -1.87
COL27A1-204ENST00000477421 LCE3DQ9BYE3 92 aa3.36□□□□□ -1.87
COL27A1-204ENST00000477421 LCE3EQ5T5B0 92 aa3.36□□□□□ -1.87
COL27A1-204ENST00000477421 KRTAP6-3Q3LI67 103 aa3.33□□□□□ -1.88
COL27A1-204ENST00000477421 KRTAP6-1Q3LI64 71 aa3.2□□□□□ -1.9
COL27A1-204ENST00000477421 MT1AP04731 61 aa3.16□□□□□ -1.9
COL27A1-204ENST00000477421 MDN1Q9NU22 5596 aa3.15□□□□□ -1.91
COL27A1-204ENST00000477421 MT4P47944 62 aa3.15□□□□□ -1.91
COL27A1-204ENST00000477421 PRM1P04553 51 aa3.11□□□□□ -1.91
COL27A1-204ENST00000477421 KRTAP6-2Q3LI66 62 aa3.02□□□□□ -1.93
COL27A1-204ENST00000477421 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.01□□□□□ -1.93
COL27A1-204ENST00000477421 LCE1BQ5T7P3 118 aa2.9□□□□□ -1.95
COL27A1-204ENST00000477421 KRTAP5-9P26371 169 aa2.88□□□□□ -1.95
COL27A1-204ENST00000477421 MUC19Q7Z5P9 8384 aa2.83□□□□□ -1.96
COL27A1-204ENST00000477421 KRTAP4-6Q9BYQ5 205 aa2.75□□□□□ -1.97
COL27A1-204ENST00000477421 NEBP20929 6669 aa2.72□□□□□ -1.97
COL27A1-204ENST00000477421 KRTAP4-12Q9BQ66 201 aa2.67□□□□□ -1.98
COL27A1-204ENST00000477421 KRTAP20-1Q3LI63 56 aa2.67□□□□□ -1.98
COL27A1-204ENST00000477421 KRTAP5-5Q701N2 237 aaPredicted RBP2.64□□□□□ -1.99
COL27A1-204ENST00000477421 KRTAP20-2Q3LI61 65 aa2.57□□□□□ -2
COL27A1-204ENST00000477421 GPR98Q8WXG9 6306 aa2.52□□□□□ -2.01
COL27A1-204ENST00000477421 MUC5ACP98088 5654 aa2.51□□□□□ -2.01
COL27A1-204ENST00000477421 HMCN1Q96RW7 5635 aa2.42□□□□□ -2.02
COL27A1-204ENST00000477421 KRTAP4-11Q9BYQ6 195 aa2.4□□□□□ -2.03
COL27A1-204ENST00000477421 KRTAP5-4Q6L8H1 288 aa2.36□□□□□ -2.03
COL27A1-204ENST00000477421 LCE1CQ5T751 118 aa2.28□□□□□ -2.04
COL27A1-204ENST00000477421 KRTAP4-4Q9BYR3 166 aa2.26□□□□□ -2.05
COL27A1-204ENST00000477421 KRTAP4-2Q9BYR5 136 aa2.2□□□□□ -2.06
COL27A1-204ENST00000477421 KRTAP5-2Q701N4 177 aa2.14□□□□□ -2.07
COL27A1-204ENST00000477421 KRTAP5-3Q6L8H2 238 aa2.14□□□□□ -2.07
COL27A1-204ENST00000477421 AHNAK2Q8IVF2 5795 aa2.09□□□□□ -2.07
COL27A1-204ENST00000477421 KRTAP5-10Q6L8G5 202 aa2.04□□□□□ -2.08
COL27A1-204ENST00000477421 MUC5BQ9HC84 5762 aaPredicted RBP2□□□□□ -2.09
COL27A1-204ENST00000477421 KRTAP5-8O75690 187 aa1.98□□□□□ -2.09
COL27A1-204ENST00000477421 KRTAP5-1Q6L8H4 278 aa1.93□□□□□ -2.1
COL27A1-204ENST00000477421 KRTAP21-2Q3LI59 83 aa1.83□□□□□ -2.12
COL27A1-204ENST00000477421 AHNAKQ09666 5890 aaKnown RBP1.75□□□□□ -2.13
COL27A1-204ENST00000477421 KRTAP5-11Q6L8G4 156 aa1.72□□□□□ -2.13
COL27A1-204ENST00000477421 KRTAP21-1Q3LI58 79 aa1.66□□□□□ -2.14
COL27A1-204ENST00000477421 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.66□□□□□ -2.14
COL27A1-204ENST00000477421 KRTAP5-7Q6L8G8 165 aa1.61□□□□□ -2.15
COL27A1-204ENST00000477421 PHGR1C9JFL3 82 aa1.49□□□□□ -2.17
COL27A1-204ENST00000477421 MUC16Q8WXI7 14507 aa0.99□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 10.5 ms