RNA–Protein interactions for RNA: ENST00000476724.1

TMEM53-208, Transcript of transmembrane protein 53, humanhuman

TSL 1 (best)

Gene TMEM53, Length 2,075 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-208ENST00000476724 KRTAP19-6Q3LI70 58 aa6.24□□□□□ -1.41
TMEM53-208ENST00000476724 KMT2DO14686 5537 aa6.22□□□□□ -1.41
TMEM53-208ENST00000476724 KRTAP19-4Q3LI73 84 aa6.19□□□□□ -1.42
TMEM53-208ENST00000476724 KRTAP4-7Q9BYR0 210 aa6.16□□□□□ -1.42
TMEM53-208ENST00000476724 KRTAP19-5Q3LI72 72 aa6.12□□□□□ -1.43
TMEM53-208ENST00000476724 FCGBPQ9Y6R7 5405 aaPredicted RBP6.07□□□□□ -1.44
TMEM53-208ENST00000476724 KRTAP4-9Q9BYQ8 210 aa6.06□□□□□ -1.44
TMEM53-208ENST00000476724 LCE3CQ5T5A8 94 aa6.01□□□□□ -1.45
TMEM53-208ENST00000476724 LCE5AQ5TCM9 118 aa5.95□□□□□ -1.46
TMEM53-208ENST00000476724 KRTAP4-2Q9BYR5 136 aa5.95□□□□□ -1.46
TMEM53-208ENST00000476724 KRTAP4-11Q9BYQ6 195 aa5.91□□□□□ -1.46
TMEM53-208ENST00000476724 KRTAP19-7Q3SYF9 63 aa5.9□□□□□ -1.47
TMEM53-208ENST00000476724 CRCT1Q9UGL9 99 aa5.87□□□□□ -1.47
TMEM53-208ENST00000476724 MACF1Q9UPN3 7388 aaKnown RBP5.84□□□□□ -1.47
TMEM53-208ENST00000476724 INE1O15225 51 aa5.76□□□□□ -1.49
TMEM53-208ENST00000476724 MT1EP04732 61 aa5.76□□□□□ -1.49
TMEM53-208ENST00000476724 MT1LQ93083 61 aa5.73□□□□□ -1.49
TMEM53-208ENST00000476724 SYNE2Q8WXH0 6885 aaKnown RBP5.72□□□□□ -1.49
TMEM53-208ENST00000476724 KRTAP9-6A8MVA2 160 aa5.69□□□□□ -1.5
TMEM53-208ENST00000476724 MUC12Q9UKN1 5478 aa5.66□□□□□ -1.5
TMEM53-208ENST00000476724 SPRR2FQ96RM1 72 aa5.6□□□□□ -1.51
TMEM53-208ENST00000476724 KRTAP2-3P0C7H8 128 aa5.54□□□□□ -1.52
TMEM53-208ENST00000476724 KRTAP2-4Q9BYR9 128 aa5.54□□□□□ -1.52
TMEM53-208ENST00000476724 KRTAP2-1Q9BYU5 128 aa5.54□□□□□ -1.52
TMEM53-208ENST00000476724 KRTAP19-3Q7Z4W3 81 aa5.51□□□□□ -1.53
TMEM53-208ENST00000476724 KRTAP5-9P26371 169 aa5.46□□□□□ -1.53
TMEM53-208ENST00000476724 MT1GP13640 62 aa5.45□□□□□ -1.54
TMEM53-208ENST00000476724 MT1MQ8N339 61 aa5.43□□□□□ -1.54
TMEM53-208ENST00000476724 KRTAP4-3Q9BYR4 195 aa5.42□□□□□ -1.54
TMEM53-208ENST00000476724 MDN1Q9NU22 5596 aa5.41□□□□□ -1.54
TMEM53-208ENST00000476724 LCE1AQ5T7P2 110 aa5.33□□□□□ -1.56
TMEM53-208ENST00000476724 KRTAP6-3Q3LI67 103 aa5.3□□□□□ -1.56
TMEM53-208ENST00000476724 DSTQ03001 7570 aaKnown RBP5.29□□□□□ -1.56
TMEM53-208ENST00000476724 SPRR2EP22531 72 aa5.27□□□□□ -1.57
TMEM53-208ENST00000476724 SPRR2BP35325 72 aa5.27□□□□□ -1.57
TMEM53-208ENST00000476724 SPRR2AP35326 72 aa5.27□□□□□ -1.57
TMEM53-208ENST00000476724 KRTAP5-3Q6L8H2 238 aa5.11□□□□□ -1.59
TMEM53-208ENST00000476724 SPRR2DP22532 72 aa5.06□□□□□ -1.6
TMEM53-208ENST00000476724 NEBP20929 6669 aa5.05□□□□□ -1.6
TMEM53-208ENST00000476724 KRTAP5-5Q701N2 237 aaPredicted RBP4.88□□□□□ -1.63
TMEM53-208ENST00000476724 MT1AP04731 61 aa4.86□□□□□ -1.63
TMEM53-208ENST00000476724 KRTAP6-1Q3LI64 71 aa4.83□□□□□ -1.64
TMEM53-208ENST00000476724 KRTAP12-4P60329 112 aa4.82□□□□□ -1.64
TMEM53-208ENST00000476724 SYNE1Q8NF91 8797 aaKnown RBP4.75□□□□□ -1.65
TMEM53-208ENST00000476724 LCE3DQ9BYE3 92 aa4.61□□□□□ -1.67
TMEM53-208ENST00000476724 KRTAP5-4Q6L8H1 288 aa4.58□□□□□ -1.68
TMEM53-208ENST00000476724 LCE3EQ5T5B0 92 aa4.55□□□□□ -1.68
TMEM53-208ENST00000476724 KRTAP2-2Q9BYT5 123 aa4.52□□□□□ -1.69
TMEM53-208ENST00000476724 KRTAP20-1Q3LI63 56 aa4.5□□□□□ -1.69
TMEM53-208ENST00000476724 MT4P47944 62 aa4.45□□□□□ -1.7
TMEM53-208ENST00000476724 MT3P25713 68 aa4.39□□□□□ -1.71
TMEM53-208ENST00000476724 KRTAP6-2Q3LI66 62 aa4.39□□□□□ -1.71
TMEM53-208ENST00000476724 KRTAP20-2Q3LI61 65 aa4.31□□□□□ -1.72
TMEM53-208ENST00000476724 HMCN1Q96RW7 5635 aa4.31□□□□□ -1.72
TMEM53-208ENST00000476724 PRM1P04553 51 aa4.22□□□□□ -1.73
TMEM53-208ENST00000476724 OBSCNQ5VST9 7968 aa4.2□□□□□ -1.74
TMEM53-208ENST00000476724 KRTAP5-2Q701N4 177 aa4.18□□□□□ -1.74
TMEM53-208ENST00000476724 KRTAP5-11Q6L8G4 156 aa4.06□□□□□ -1.76
TMEM53-208ENST00000476724 LCE1FQ5T754 118 aa3.88□□□□□ -1.79
TMEM53-208ENST00000476724 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.86□□□□□ -1.79
TMEM53-208ENST00000476724 LCE1EQ5T753 118 aa3.83□□□□□ -1.8
TMEM53-208ENST00000476724 AHNAK2Q8IVF2 5795 aa3.75□□□□□ -1.81
TMEM53-208ENST00000476724 KRTAP5-1Q6L8H4 278 aa3.63□□□□□ -1.83
TMEM53-208ENST00000476724 KRTAP5-8O75690 187 aa3.58□□□□□ -1.84
TMEM53-208ENST00000476724 MUC5ACP98088 5654 aa3.57□□□□□ -1.84
TMEM53-208ENST00000476724 LCE1BQ5T7P3 118 aa3.56□□□□□ -1.84
TMEM53-208ENST00000476724 KRTAP5-10Q6L8G5 202 aa3.53□□□□□ -1.84
TMEM53-208ENST00000476724 GPR98Q8WXG9 6306 aa3.47□□□□□ -1.85
TMEM53-208ENST00000476724 LCE1CQ5T751 118 aa3.47□□□□□ -1.85
TMEM53-208ENST00000476724 KRTAP5-7Q6L8G8 165 aa3.43□□□□□ -1.86
TMEM53-208ENST00000476724 KRTAP4-4Q9BYR3 166 aa3.29□□□□□ -1.88
TMEM53-208ENST00000476724 KRTAP21-2Q3LI59 83 aa3.15□□□□□ -1.91
TMEM53-208ENST00000476724 MUC5BQ9HC84 5762 aaPredicted RBP3.12□□□□□ -1.91
TMEM53-208ENST00000476724 AHNAKQ09666 5890 aaKnown RBP2.73□□□□□ -1.97
TMEM53-208ENST00000476724 KRTAP21-1Q3LI58 79 aa2.69□□□□□ -1.98
TMEM53-208ENST00000476724 PHGR1C9JFL3 82 aa2.63□□□□□ -1.99
TMEM53-208ENST00000476724 MUC19Q7Z5P9 8384 aa2.48□□□□□ -2.01
TMEM53-208ENST00000476724 MUC16Q8WXI7 14507 aa1.75□□□□□ -2.13
Retrieved 78 of 20,778 RNA–protein pairs in 112.2 ms