RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 KRTAP4-8Q9BYQ9 185 aa4.55□□□□□ -1.68
HDAC1-206ENST00000476391 USH2AO75445 5202 aa4.53□□□□□ -1.68
HDAC1-206ENST00000476391 KMT2DO14686 5537 aa4.5□□□□□ -1.69
HDAC1-206ENST00000476391 MT1LQ93083 61 aa4.49□□□□□ -1.69
HDAC1-206ENST00000476391 MT1EP04732 61 aa4.39□□□□□ -1.71
HDAC1-206ENST00000476391 KRTAP9-9Q9BYP9 154 aa4.35□□□□□ -1.71
HDAC1-206ENST00000476391 KRTAP9-2Q9BYQ4 174 aa4.35□□□□□ -1.71
HDAC1-206ENST00000476391 SSPOA2VEC9 5147 aa4.33□□□□□ -1.72
HDAC1-206ENST00000476391 KRTAP9-6A0A140TA67 174 aa4.3□□□□□ -1.72
HDAC1-206ENST00000476391 KRTAP9-7A8MTY7 169 aa4.3□□□□□ -1.72
HDAC1-206ENST00000476391 KRTAP2-2Q9BYT5 123 aa4.29□□□□□ -1.72
HDAC1-206ENST00000476391 MT1GP13640 62 aa4.21□□□□□ -1.74
HDAC1-206ENST00000476391 KRTAP19-6Q3LI70 58 aa4.17□□□□□ -1.74
HDAC1-206ENST00000476391 LCE4AQ5TA78 99 aa4.16□□□□□ -1.74
HDAC1-206ENST00000476391 FCGBPQ9Y6R7 5405 aaPredicted RBP4.15□□□□□ -1.74
HDAC1-206ENST00000476391 KRTAP4-3Q9BYR4 195 aa4.15□□□□□ -1.75
HDAC1-206ENST00000476391 MT1AP04731 61 aa4.14□□□□□ -1.75
HDAC1-206ENST00000476391 CRCT1Q9UGL9 99 aa4.14□□□□□ -1.75
HDAC1-206ENST00000476391 LCE1FQ5T754 118 aa4.13□□□□□ -1.75
HDAC1-206ENST00000476391 PRM1P04553 51 aa4.12□□□□□ -1.75
HDAC1-206ENST00000476391 MT3P25713 68 aa4.12□□□□□ -1.75
HDAC1-206ENST00000476391 LCE1AQ5T7P2 110 aa4.12□□□□□ -1.75
HDAC1-206ENST00000476391 KRTAP6-3Q3LI67 103 aa4.09□□□□□ -1.76
HDAC1-206ENST00000476391 KRTAP5-5Q701N2 237 aaPredicted RBP4.06□□□□□ -1.76
HDAC1-206ENST00000476391 MT1MQ8N339 61 aa4.06□□□□□ -1.76
HDAC1-206ENST00000476391 LCE3EQ5T5B0 92 aa4.05□□□□□ -1.76
HDAC1-206ENST00000476391 LCE3BQ5TA77 95 aa4.05□□□□□ -1.76
HDAC1-206ENST00000476391 KRTAP4-9Q9BYQ8 210 aa4.04□□□□□ -1.76
HDAC1-206ENST00000476391 LCE3DQ9BYE3 92 aa4.04□□□□□ -1.76
HDAC1-206ENST00000476391 MACF1Q9UPN3 7388 aaKnown RBP4.03□□□□□ -1.76
HDAC1-206ENST00000476391 SYNE2Q8WXH0 6885 aaKnown RBP4.02□□□□□ -1.77
HDAC1-206ENST00000476391 SYNE1Q8NF91 8797 aaKnown RBP3.99□□□□□ -1.77
HDAC1-206ENST00000476391 KRTAP19-3Q7Z4W3 81 aa3.99□□□□□ -1.77
HDAC1-206ENST00000476391 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.92□□□□□ -1.78
HDAC1-206ENST00000476391 KRTAP6-2Q3LI66 62 aa3.81□□□□□ -1.8
HDAC1-206ENST00000476391 MUC12Q9UKN1 5478 aa3.81□□□□□ -1.8
HDAC1-206ENST00000476391 KRTAP6-1Q3LI64 71 aa3.8□□□□□ -1.8
HDAC1-206ENST00000476391 MDN1Q9NU22 5596 aa3.76□□□□□ -1.81
HDAC1-206ENST00000476391 SPRR2FQ96RM1 72 aa3.75□□□□□ -1.81
HDAC1-206ENST00000476391 KRTAP5-3Q6L8H2 238 aa3.73□□□□□ -1.81
HDAC1-206ENST00000476391 DSTQ03001 7570 aaKnown RBP3.7□□□□□ -1.82
HDAC1-206ENST00000476391 KRTAP5-9P26371 169 aa3.66□□□□□ -1.82
HDAC1-206ENST00000476391 LCE1EQ5T753 118 aa3.62□□□□□ -1.83
HDAC1-206ENST00000476391 KRTAP4-12Q9BQ66 201 aa3.56□□□□□ -1.84
HDAC1-206ENST00000476391 KRTAP4-2Q9BYR5 136 aa3.54□□□□□ -1.84
HDAC1-206ENST00000476391 SPRR2EP22531 72 aa3.54□□□□□ -1.84
HDAC1-206ENST00000476391 SPRR2BP35325 72 aa3.54□□□□□ -1.84
HDAC1-206ENST00000476391 SPRR2AP35326 72 aa3.54□□□□□ -1.84
HDAC1-206ENST00000476391 NEBP20929 6669 aa3.51□□□□□ -1.85
HDAC1-206ENST00000476391 LCE1DQ5T752 114 aa3.5□□□□□ -1.85
HDAC1-206ENST00000476391 OBSCNQ5VST9 7968 aa3.47□□□□□ -1.85
HDAC1-206ENST00000476391 SPRR2DP22532 72 aa3.41□□□□□ -1.86
HDAC1-206ENST00000476391 KRTAP20-1Q3LI63 56 aa3.24□□□□□ -1.89
HDAC1-206ENST00000476391 KRTAP4-11Q9BYQ6 195 aa3.18□□□□□ -1.9
HDAC1-206ENST00000476391 KRTAP5-4Q6L8H1 288 aa3.07□□□□□ -1.92
HDAC1-206ENST00000476391 MT4P47944 62 aa3.04□□□□□ -1.92
HDAC1-206ENST00000476391 HMCN1Q96RW7 5635 aa2.99□□□□□ -1.93
HDAC1-206ENST00000476391 KRTAP5-10Q6L8G5 202 aa2.89□□□□□ -1.95
HDAC1-206ENST00000476391 KRTAP20-2Q3LI61 65 aa2.87□□□□□ -1.95
HDAC1-206ENST00000476391 MUC5ACP98088 5654 aa2.86□□□□□ -1.95
HDAC1-206ENST00000476391 KRTAP5-2Q701N4 177 aa2.79□□□□□ -1.96
HDAC1-206ENST00000476391 KRTAP5-1Q6L8H4 278 aa2.77□□□□□ -1.97
HDAC1-206ENST00000476391 GPR98Q8WXG9 6306 aa2.75□□□□□ -1.97
HDAC1-206ENST00000476391 KRTAP21-1Q3LI58 79 aa2.7□□□□□ -1.98
HDAC1-206ENST00000476391 AHNAK2Q8IVF2 5795 aa2.67□□□□□ -1.98
HDAC1-206ENST00000476391 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.6□□□□□ -1.99
HDAC1-206ENST00000476391 LCE1BQ5T7P3 118 aa2.57□□□□□ -2
HDAC1-206ENST00000476391 MUC19Q7Z5P9 8384 aa2.48□□□□□ -2.01
HDAC1-206ENST00000476391 LCE1CQ5T751 118 aa2.47□□□□□ -2.01
HDAC1-206ENST00000476391 MUC5BQ9HC84 5762 aaPredicted RBP2.45□□□□□ -2.02
HDAC1-206ENST00000476391 KRTAP21-2Q3LI59 83 aa2.44□□□□□ -2.02
HDAC1-206ENST00000476391 KRTAP5-8O75690 187 aa2.4□□□□□ -2.02
HDAC1-206ENST00000476391 KRTAP5-7Q6L8G8 165 aa2.31□□□□□ -2.04
HDAC1-206ENST00000476391 AHNAKQ09666 5890 aaKnown RBP2.25□□□□□ -2.05
HDAC1-206ENST00000476391 KRTAP4-4Q9BYR3 166 aa2.18□□□□□ -2.06
HDAC1-206ENST00000476391 KRTAP5-11Q6L8G4 156 aa2.15□□□□□ -2.07
HDAC1-206ENST00000476391 PHGR1C9JFL3 82 aa1.77□□□□□ -2.13
HDAC1-206ENST00000476391 MUC16Q8WXI7 14507 aa1.33□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 5.3 ms