RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 DEFB135Q30KP9 77 aa1.2□□□□□ -2.22
UBR3-208ENST00000474426 KRTAP5-11Q6L8G4 156 aa1.18□□□□□ -2.22
UBR3-208ENST00000474426 OBSCNQ5VST9 7968 aa1.18□□□□□ -2.22
UBR3-208ENST00000474426 FAT4Q6V0I7 4981 aa1.18□□□□□ -2.22
UBR3-208ENST00000474426 LRP1Q07954 4544 aaKnown RBP1.16□□□□□ -2.22
UBR3-208ENST00000474426 TNXBP22105 4242 aa1.16□□□□□ -2.22
UBR3-208ENST00000474426 FAT1Q14517 4588 aa1.16□□□□□ -2.22
UBR3-208ENST00000474426 LPAP08519 4548 aa1.15□□□□□ -2.23
UBR3-208ENST00000474426 AHNAKQ09666 5890 aaKnown RBP1.15□□□□□ -2.23
UBR3-208ENST00000474426 C9orf92A6NGG3 77 aa1.15□□□□□ -2.23
UBR3-208ENST00000474426 KRTAP5-8O75690 187 aa1.14□□□□□ -2.23
UBR3-208ENST00000474426 DNAH5Q8TE73 4624 aa1.14□□□□□ -2.23
UBR3-208ENST00000474426 MUC2Q02817 5179 aa1.13□□□□□ -2.23
UBR3-208ENST00000474426 KRTAP4-4Q9BYR3 166 aa1.13□□□□□ -2.23
UBR3-208ENST00000474426 KRTAP8-1Q8IUC2 63 aa1.11□□□□□ -2.23
UBR3-208ENST00000474426 LCE3AQ5TA76 89 aa1.11□□□□□ -2.23
UBR3-208ENST00000474426 RNF213Q63HN8 5207 aa1.11□□□□□ -2.23
UBR3-208ENST00000474426 KRTAP12-3P60328 96 aa1.1□□□□□ -2.23
UBR3-208ENST00000474426 RPS29P62273 56 aaKnown RBP1.1□□□□□ -2.23
UBR3-208ENST00000474426 MUC17Q685J3 4493 aa1.09□□□□□ -2.23
UBR3-208ENST00000474426 M0R2T5 61 aa1.09□□□□□ -2.23
UBR3-208ENST00000474426 NEBP20929 6669 aa1.09□□□□□ -2.23
UBR3-208ENST00000474426 KRTAP5-5Q701N2 237 aaPredicted RBP1.07□□□□□ -2.24
UBR3-208ENST00000474426 SSPOA2VEC9 5147 aa1.07□□□□□ -2.24
UBR3-208ENST00000474426 KRTAP5-1Q6L8H4 278 aa1.07□□□□□ -2.24
UBR3-208ENST00000474426 PRM1P04553 51 aa1.06□□□□□ -2.24
UBR3-208ENST00000474426 KRTAP9-6A8MVA2 160 aa1.05□□□□□ -2.24
UBR3-208ENST00000474426 SMR3BP02814 79 aaPredicted RBP1.05□□□□□ -2.24
UBR3-208ENST00000474426 KRTAP20-1Q3LI63 56 aa1.05□□□□□ -2.24
UBR3-208ENST00000474426 MT1HL1P0DM35 61 aa1□□□□□ -2.25
UBR3-208ENST00000474426 KRTAP19-5Q3LI72 72 aa0.98□□□□□ -2.25
UBR3-208ENST00000474426 LRP2P98164 4655 aa0.98□□□□□ -2.25
UBR3-208ENST00000474426 LCE1CQ5T751 118 aa0.94□□□□□ -2.26
UBR3-208ENST00000474426 LCE1BQ5T7P3 118 aa0.94□□□□□ -2.26
UBR3-208ENST00000474426 AHNAK2Q8IVF2 5795 aa0.94□□□□□ -2.26
UBR3-208ENST00000474426 KRTAP19-2Q3LHN2 52 aa0.92□□□□□ -2.26
UBR3-208ENST00000474426 KMT2DO14686 5537 aa0.92□□□□□ -2.26
UBR3-208ENST00000474426 USH2AO75445 5202 aa0.9□□□□□ -2.27
UBR3-208ENST00000474426 DSTQ03001 7570 aaKnown RBP0.9□□□□□ -2.27
UBR3-208ENST00000474426 KRTAP4-3Q9BYR4 195 aa0.89□□□□□ -2.27
UBR3-208ENST00000474426 FCGBPQ9Y6R7 5405 aaPredicted RBP0.89□□□□□ -2.27
UBR3-208ENST00000474426 KRTAP6-2Q3LI66 62 aa0.88□□□□□ -2.27
UBR3-208ENST00000474426 MT1AP04731 61 aa0.87□□□□□ -2.27
UBR3-208ENST00000474426 KRTAP19-3Q7Z4W3 81 aa0.87□□□□□ -2.27
UBR3-208ENST00000474426 KRTAP19-6Q3LI70 58 aa0.87□□□□□ -2.27
UBR3-208ENST00000474426 MT1HP80294 61 aa0.85□□□□□ -2.27
UBR3-208ENST00000474426 KRTAP5-7Q6L8G8 165 aa0.84□□□□□ -2.28
UBR3-208ENST00000474426 SYNE2Q8WXH0 6885 aaKnown RBP0.83□□□□□ -2.28
UBR3-208ENST00000474426 MACF1Q9UPN3 7388 aaKnown RBP0.83□□□□□ -2.28
UBR3-208ENST00000474426 KRTAP4-1Q9BYQ7 146 aa0.83□□□□□ -2.28
UBR3-208ENST00000474426 KRTAP5-10Q6L8G5 202 aa0.82□□□□□ -2.28
UBR3-208ENST00000474426 SPRR2GQ9BYE4 73 aa0.81□□□□□ -2.28
UBR3-208ENST00000474426 MDN1Q9NU22 5596 aa0.8□□□□□ -2.28
UBR3-208ENST00000474426 FSIP2Q5CZC0 6907 aa0.79□□□□□ -2.28
UBR3-208ENST00000474426 SPRR2DP22532 72 aa0.79□□□□□ -2.28
UBR3-208ENST00000474426 MT1XP80297 61 aa0.77□□□□□ -2.29
UBR3-208ENST00000474426 KRTAP21-1Q3LI58 79 aa0.77□□□□□ -2.29
UBR3-208ENST00000474426 MUC12Q9UKN1 5478 aa0.77□□□□□ -2.29
UBR3-208ENST00000474426 SPRR2FQ96RM1 72 aa0.76□□□□□ -2.29
UBR3-208ENST00000474426 MT1EP04732 61 aa0.75□□□□□ -2.29
UBR3-208ENST00000474426 SPRR2BP35325 72 aa0.74□□□□□ -2.29
UBR3-208ENST00000474426 MUC5ACP98088 5654 aa0.73□□□□□ -2.29
UBR3-208ENST00000474426 MT2AP02795 61 aa0.73□□□□□ -2.29
UBR3-208ENST00000474426 SPRR2AP35326 72 aa0.73□□□□□ -2.29
UBR3-208ENST00000474426 MT1LQ93083 61 aa0.73□□□□□ -2.29
UBR3-208ENST00000474426 MT1FP04733 61 aa0.72□□□□□ -2.29
UBR3-208ENST00000474426 SPRR2EP22531 72 aa0.71□□□□□ -2.3
UBR3-208ENST00000474426 KRTAP19-7Q3SYF9 63 aa0.69□□□□□ -2.3
UBR3-208ENST00000474426 KRTAP19-8Q3LI54 63 aa0.69□□□□□ -2.3
UBR3-208ENST00000474426 MT1GP13640 62 aa0.67□□□□□ -2.3
UBR3-208ENST00000474426 MT1BP07438 61 aa0.66□□□□□ -2.3
UBR3-208ENST00000474426 KRTAP6-1Q3LI64 71 aa0.6□□□□□ -2.31
UBR3-208ENST00000474426 KRTAP20-2Q3LI61 65 aa0.57□□□□□ -2.32
UBR3-208ENST00000474426 MT1MQ8N339 61 aa0.54□□□□□ -2.32
UBR3-208ENST00000474426 MT4P47944 62 aa0.53□□□□□ -2.32
UBR3-208ENST00000474426 MUC16Q8WXI7 14507 aa0.51□□□□□ -2.33
UBR3-208ENST00000474426 PHGR1C9JFL3 82 aa0.5□□□□□ -2.33
UBR3-208ENST00000474426 KRTAP21-2Q3LI59 83 aa0.44□□□□□ -2.34
Retrieved 78 of 20,778 RNA–protein pairs in 95.6 ms