RNA–Protein interactions for RNA: ENST00000474157.1

GPNMB-209, Transcript of glycoprotein nmb, humanhuman

TSL 4

Gene GPNMB, Length 513 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-209ENST00000474157 SYNE2Q8WXH0 6885 aaKnown RBP3.18□□□□□ -1.9
GPNMB-209ENST00000474157 TNP1P09430 55 aa3.17□□□□□ -1.9
GPNMB-209ENST00000474157 SSPOA2VEC9 5147 aa3.15□□□□□ -1.9
GPNMB-209ENST00000474157 MT1HP80294 61 aa3.15□□□□□ -1.91
GPNMB-209ENST00000474157 MACF1Q9UPN3 7388 aaKnown RBP3.15□□□□□ -1.91
GPNMB-209ENST00000474157 FCGBPQ9Y6R7 5405 aaPredicted RBP3.14□□□□□ -1.91
GPNMB-209ENST00000474157 C9orf92A6NGG3 77 aa3.13□□□□□ -1.91
GPNMB-209ENST00000474157 KRTAP4-1Q9BYQ7 146 aa3.13□□□□□ -1.91
GPNMB-209ENST00000474157 M0R2T5 61 aa3.11□□□□□ -1.91
GPNMB-209ENST00000474157 USH2AO75445 5202 aa3.1□□□□□ -1.91
GPNMB-209ENST00000474157 KRTAP19-2Q3LHN2 52 aa3.06□□□□□ -1.92
GPNMB-209ENST00000474157 KRTAP6-3Q3LI67 103 aa3.05□□□□□ -1.92
GPNMB-209ENST00000474157 NEBP20929 6669 aa3.04□□□□□ -1.92
GPNMB-209ENST00000474157 KRTAP20-1Q3LI63 56 aa3.02□□□□□ -1.93
GPNMB-209ENST00000474157 KRTAP10-10P60014 251 aa2.99□□□□□ -1.93
GPNMB-209ENST00000474157 LCE3AQ5TA76 89 aa2.93□□□□□ -1.94
GPNMB-209ENST00000474157 LCE3DQ9BYE3 92 aa2.92□□□□□ -1.94
GPNMB-209ENST00000474157 KRTAP5-1Q6L8H4 278 aa2.91□□□□□ -1.94
GPNMB-209ENST00000474157 KRTAP19-6Q3LI70 58 aa2.89□□□□□ -1.95
GPNMB-209ENST00000474157 FLGP20930 4061 aaPredicted RBP2.89□□□□□ -1.95
GPNMB-209ENST00000474157 MUC12Q9UKN1 5478 aa2.88□□□□□ -1.95
GPNMB-209ENST00000474157 KMT2DO14686 5537 aa2.85□□□□□ -1.95
GPNMB-209ENST00000474157 KRTAP2-3P0C7H8 128 aa2.85□□□□□ -1.95
GPNMB-209ENST00000474157 KRTAP2-4Q9BYR9 128 aa2.85□□□□□ -1.95
GPNMB-209ENST00000474157 KRTAP8-1Q8IUC2 63 aa2.83□□□□□ -1.96
GPNMB-209ENST00000474157 MT2AP02795 61 aa2.82□□□□□ -1.96
GPNMB-209ENST00000474157 MT1FP04733 61 aa2.79□□□□□ -1.96
GPNMB-209ENST00000474157 GPR98Q8WXG9 6306 aa2.78□□□□□ -1.97
GPNMB-209ENST00000474157 MDN1Q9NU22 5596 aa2.76□□□□□ -1.97
GPNMB-209ENST00000474157 KRTAP4-4Q9BYR3 166 aa2.73□□□□□ -1.97
GPNMB-209ENST00000474157 KRTAP2-1Q9BYU5 128 aa2.72□□□□□ -1.97
GPNMB-209ENST00000474157 KRTAP5-9P26371 169 aa2.71□□□□□ -1.98
GPNMB-209ENST00000474157 OBSCNQ5VST9 7968 aa2.7□□□□□ -1.98
GPNMB-209ENST00000474157 KRTAP5-4Q6L8H1 288 aa2.69□□□□□ -1.98
GPNMB-209ENST00000474157 KRTAP5-5Q701N2 237 aaPredicted RBP2.68□□□□□ -1.98
GPNMB-209ENST00000474157 KRTAP12-3P60328 96 aa2.64□□□□□ -1.99
GPNMB-209ENST00000474157 SPRR2EP22531 72 aa2.61□□□□□ -1.99
GPNMB-209ENST00000474157 SPRR2BP35325 72 aa2.61□□□□□ -1.99
GPNMB-209ENST00000474157 SPRR2AP35326 72 aa2.61□□□□□ -1.99
GPNMB-209ENST00000474157 SPRR2FQ96RM1 72 aa2.54□□□□□ -2
GPNMB-209ENST00000474157 SPRR2DP22532 72 aa2.53□□□□□ -2
GPNMB-209ENST00000474157 SPRR2GQ9BYE4 73 aa2.52□□□□□ -2.01
GPNMB-209ENST00000474157 KRTAP4-3Q9BYR4 195 aa2.52□□□□□ -2.01
GPNMB-209ENST00000474157 DSTQ03001 7570 aaKnown RBP2.5□□□□□ -2.01
GPNMB-209ENST00000474157 LCE1CQ5T751 118 aa2.48□□□□□ -2.01
GPNMB-209ENST00000474157 LCE1BQ5T7P3 118 aa2.48□□□□□ -2.01
GPNMB-209ENST00000474157 MT1BP07438 61 aa2.46□□□□□ -2.02
GPNMB-209ENST00000474157 KRTAP12-4P60329 112 aa2.44□□□□□ -2.02
GPNMB-209ENST00000474157 KRTAP19-8Q3LI54 63 aa2.41□□□□□ -2.02
GPNMB-209ENST00000474157 AHNAK2Q8IVF2 5795 aa2.41□□□□□ -2.02
GPNMB-209ENST00000474157 KRTAP19-5Q3LI72 72 aa2.36□□□□□ -2.03
GPNMB-209ENST00000474157 KRTAP5-10Q6L8G5 202 aa2.36□□□□□ -2.03
GPNMB-209ENST00000474157 HMCN1Q96RW7 5635 aa2.34□□□□□ -2.03
GPNMB-209ENST00000474157 MT1XP80297 61 aa2.34□□□□□ -2.03
GPNMB-209ENST00000474157 KRTAP5-7Q6L8G8 165 aa2.34□□□□□ -2.03
GPNMB-209ENST00000474157 MT4P47944 62 aa2.24□□□□□ -2.05
GPNMB-209ENST00000474157 MT1AP04731 61 aa2.23□□□□□ -2.05
GPNMB-209ENST00000474157 MT1EP04732 61 aa2.18□□□□□ -2.06
GPNMB-209ENST00000474157 PRM1P04553 51 aa2.17□□□□□ -2.06
GPNMB-209ENST00000474157 MT1LQ93083 61 aa2.14□□□□□ -2.07
GPNMB-209ENST00000474157 KRTAP5-2Q701N4 177 aa2.13□□□□□ -2.07
GPNMB-209ENST00000474157 AHNAKQ09666 5890 aaKnown RBP2.12□□□□□ -2.07
GPNMB-209ENST00000474157 KRTAP19-7Q3SYF9 63 aa2.08□□□□□ -2.08
GPNMB-209ENST00000474157 MUC5ACP98088 5654 aa2.07□□□□□ -2.08
GPNMB-209ENST00000474157 KRTAP19-3Q7Z4W3 81 aa2.05□□□□□ -2.08
GPNMB-209ENST00000474157 MUC5BQ9HC84 5762 aaPredicted RBP2.04□□□□□ -2.08
GPNMB-209ENST00000474157 MUC19Q7Z5P9 8384 aa2.03□□□□□ -2.09
GPNMB-209ENST00000474157 KRTAP20-2Q3LI61 65 aa1.99□□□□□ -2.09
GPNMB-209ENST00000474157 MT1GP13640 62 aa1.97□□□□□ -2.09
GPNMB-209ENST00000474157 MT1MQ8N339 61 aa1.94□□□□□ -2.1
GPNMB-209ENST00000474157 KRTAP6-2Q3LI66 62 aa1.91□□□□□ -2.1
GPNMB-209ENST00000474157 KRTAP5-8O75690 187 aa1.9□□□□□ -2.11
GPNMB-209ENST00000474157 SYNE1Q8NF91 8797 aaKnown RBP1.86□□□□□ -2.11
GPNMB-209ENST00000474157 KRTAP21-2Q3LI59 83 aa1.75□□□□□ -2.13
GPNMB-209ENST00000474157 KRTAP6-1Q3LI64 71 aa1.7□□□□□ -2.14
GPNMB-209ENST00000474157 KRTAP21-1Q3LI58 79 aa1.56□□□□□ -2.16
GPNMB-209ENST00000474157 PHGR1C9JFL3 82 aa1.41□□□□□ -2.18
GPNMB-209ENST00000474157 MUC16Q8WXI7 14507 aa0.98□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 74 ms