RNA–Protein interactions for RNA: ENST00000473311.5

ABCF3-210, Transcript of ATP binding cassette subfamily F member 3, human

TSL 5

Gene ABCF3, Length 2,844 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCF3-210	ENST00000473311	KRTAP19-4	Q3LI73	84 aa		4.76	□□□□□ -1.65
ABCF3-210	ENST00000473311	SSPO	A2VEC9	5147 aa		4.73	□□□□□ -1.65
ABCF3-210	ENST00000473311	LCE2D	Q5TA82	110 aa	Predicted RBP	4.66	□□□□□ -1.66
ABCF3-210	ENST00000473311	CRCT1	Q9UGL9	99 aa		4.65	□□□□□ -1.66
ABCF3-210	ENST00000473311	KRTAP19-6	Q3LI70	58 aa		4.61	□□□□□ -1.67
ABCF3-210	ENST00000473311	LOC100996750	A0A140TA64	210 aa		4.55	□□□□□ -1.68
ABCF3-210	ENST00000473311	KRTAP4-3	Q9BYR4	195 aa		4.55	□□□□□ -1.68
ABCF3-210	ENST00000473311	MT1G	P13640	62 aa		4.51	□□□□□ -1.69
ABCF3-210	ENST00000473311	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	4.51	□□□□□ -1.69
ABCF3-210	ENST00000473311	KRTAP12-4	P60329	112 aa		4.5	□□□□□ -1.69
ABCF3-210	ENST00000473311	MUC12	Q9UKN1	5478 aa		4.48	□□□□□ -1.69
ABCF3-210	ENST00000473311	KRTAP9-7	A8MTY7	169 aa		4.47	□□□□□ -1.69
ABCF3-210	ENST00000473311	MT1M	Q8N339	61 aa		4.47	□□□□□ -1.69
ABCF3-210	ENST00000473311	KRTAP19-3	Q7Z4W3	81 aa		4.46	□□□□□ -1.7
ABCF3-210	ENST00000473311	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	4.36	□□□□□ -1.71
ABCF3-210	ENST00000473311	DST	Q03001	7570 aa	Known RBP	4.3	□□□□□ -1.72
ABCF3-210	ENST00000473311	SPRR2F	Q96RM1	72 aa		4.29	□□□□□ -1.72
ABCF3-210	ENST00000473311	LCE5A	Q5TCM9	118 aa		4.28	□□□□□ -1.72
ABCF3-210	ENST00000473311	LCE3B	Q5TA77	95 aa		4.21	□□□□□ -1.74
ABCF3-210	ENST00000473311	KRTAP2-2	Q9BYT5	123 aa		4.19	□□□□□ -1.74
ABCF3-210	ENST00000473311	KRTAP6-3	Q3LI67	103 aa		4.17	□□□□□ -1.74
ABCF3-210	ENST00000473311	KRTAP4-9	Q9BYQ8	210 aa		4.13	□□□□□ -1.75
ABCF3-210	ENST00000473311	SYNE1	Q8NF91	8797 aa	Known RBP	4.1	□□□□□ -1.75
ABCF3-210	ENST00000473311	SYNE2	Q8WXH0	6885 aa	Known RBP	4.1	□□□□□ -1.75
ABCF3-210	ENST00000473311	LCE1A	Q5T7P2	110 aa		4.09	□□□□□ -1.75
ABCF3-210	ENST00000473311	MACF1	Q9UPN3	7388 aa	Known RBP	4.09	□□□□□ -1.76
ABCF3-210	ENST00000473311	KRTAP6-1	Q3LI64	71 aa		4.08	□□□□□ -1.76
ABCF3-210	ENST00000473311	MT1A	P04731	61 aa		4.06	□□□□□ -1.76
ABCF3-210	ENST00000473311	PRM1	P04553	51 aa		4.03	□□□□□ -1.76
ABCF3-210	ENST00000473311	MDN1	Q9NU22	5596 aa		4.01	□□□□□ -1.77
ABCF3-210	ENST00000473311	LCE3D	Q9BYE3	92 aa		3.98	□□□□□ -1.77
ABCF3-210	ENST00000473311	LCE3E	Q5T5B0	92 aa		3.97	□□□□□ -1.77
ABCF3-210	ENST00000473311	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.93	□□□□□ -1.78
ABCF3-210	ENST00000473311	KRTAP5-9	P26371	169 aa		3.87	□□□□□ -1.79
ABCF3-210	ENST00000473311	KRTAP20-1	Q3LI63	56 aa		3.87	□□□□□ -1.79
ABCF3-210	ENST00000473311	LCE1E	Q5T753	118 aa		3.87	□□□□□ -1.79
ABCF3-210	ENST00000473311	SPRR2E	P22531	72 aa		3.86	□□□□□ -1.79
ABCF3-210	ENST00000473311	SPRR2B	P35325	72 aa		3.86	□□□□□ -1.79
ABCF3-210	ENST00000473311	SPRR2A	P35326	72 aa		3.86	□□□□□ -1.79
ABCF3-210	ENST00000473311	NEB	P20929	6669 aa		3.78	□□□□□ -1.8
ABCF3-210	ENST00000473311	KRTAP9-4	Q9BYQ2	154 aa		3.77	□□□□□ -1.81
ABCF3-210	ENST00000473311	LCE1D	Q5T752	114 aa		3.71	□□□□□ -1.82
ABCF3-210	ENST00000473311	SPRR2D	P22532	72 aa		3.69	□□□□□ -1.82
ABCF3-210	ENST00000473311	KRTAP6-2	Q3LI66	62 aa		3.68	□□□□□ -1.82
ABCF3-210	ENST00000473311	OBSCN	Q5VST9	7968 aa		3.67	□□□□□ -1.82
ABCF3-210	ENST00000473311	MT3	P25713	68 aa		3.62	□□□□□ -1.83
ABCF3-210	ENST00000473311	GPR98	Q8WXG9	6306 aa		3.47	□□□□□ -1.85
ABCF3-210	ENST00000473311	KRTAP5-4	Q6L8H1	288 aa		3.38	□□□□□ -1.87
ABCF3-210	ENST00000473311	LCE1F	Q5T754	118 aa		3.33	□□□□□ -1.88
ABCF3-210	ENST00000473311	KRTAP4-6	Q9BYQ5	205 aa		3.3	□□□□□ -1.88
ABCF3-210	ENST00000473311	MT4	P47944	62 aa		3.28	□□□□□ -1.88
ABCF3-210	ENST00000473311	KRTAP20-2	Q3LI61	65 aa		3.2	□□□□□ -1.9
ABCF3-210	ENST00000473311	LCE4A	Q5TA78	99 aa		3.17	□□□□□ -1.9
ABCF3-210	ENST00000473311	KRTAP5-2	Q701N4	177 aa		3.17	□□□□□ -1.9
ABCF3-210	ENST00000473311	HMCN1	Q96RW7	5635 aa		3.08	□□□□□ -1.92
ABCF3-210	ENST00000473311	MUC5AC	P98088	5654 aa		3.07	□□□□□ -1.92
ABCF3-210	ENST00000473311	KRTAP9-9	Q9BYP9	154 aa		3.06	□□□□□ -1.92
ABCF3-210	ENST00000473311	KRTAP5-10	Q6L8G5	202 aa		3.04	□□□□□ -1.92
ABCF3-210	ENST00000473311	KRTAP5-3	Q6L8H2	238 aa		3.02	□□□□□ -1.93
ABCF3-210	ENST00000473311	AHNAK2	Q8IVF2	5795 aa		3	□□□□□ -1.93
ABCF3-210	ENST00000473311	KRTAP5-7	Q6L8G8	165 aa		3	□□□□□ -1.93
ABCF3-210	ENST00000473311	KRTAP4-11	Q9BYQ6	195 aa		2.97	□□□□□ -1.93
ABCF3-210	ENST00000473311	LCE1B	Q5T7P3	118 aa		2.94	□□□□□ -1.94
ABCF3-210	ENST00000473311	MUC19	Q7Z5P9	8384 aa		2.83	□□□□□ -1.96
ABCF3-210	ENST00000473311	KRTAP5-1	Q6L8H4	278 aa		2.81	□□□□□ -1.96
ABCF3-210	ENST00000473311	KRTAP4-2	Q9BYR5	136 aa		2.77	□□□□□ -1.97
ABCF3-210	ENST00000473311	LCE1C	Q5T751	118 aa		2.74	□□□□□ -1.97
ABCF3-210	ENST00000473311	AHNAK	Q09666	5890 aa	Known RBP	2.72	□□□□□ -1.97
ABCF3-210	ENST00000473311	KRTAP21-1	Q3LI58	79 aa		2.67	□□□□□ -1.98
ABCF3-210	ENST00000473311	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.66	□□□□□ -1.98
ABCF3-210	ENST00000473311	KRTAP21-2	Q3LI59	83 aa		2.61	□□□□□ -1.99
ABCF3-210	ENST00000473311	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.58	□□□□□ -2
ABCF3-210	ENST00000473311	KRTAP5-8	O75690	187 aa		2.49	□□□□□ -2.01
ABCF3-210	ENST00000473311	KRTAP4-4	Q9BYR3	166 aa		2.44	□□□□□ -2.02
ABCF3-210	ENST00000473311	KRTAP5-11	Q6L8G4	156 aa		2.35	□□□□□ -2.03
ABCF3-210	ENST00000473311	KRTAP4-12	Q9BQ66	201 aa		2.26	□□□□□ -2.05
ABCF3-210	ENST00000473311	PHGR1	C9JFL3	82 aa		2.03	□□□□□ -2.08
ABCF3-210	ENST00000473311	MUC16	Q8WXI7	14507 aa		1.35	□□□□□ -2.19

Retrieved 78 of 20,778 RNA–protein pairs in 11.7 ms