RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 LCE1FQ5T754 118 aa1.75□□□□□ -2.13
VPS50-210ENST00000471188 LCE3AQ5TA76 89 aa1.75□□□□□ -2.13
VPS50-210ENST00000471188 UBR4Q5T4S7 5183 aa1.75□□□□□ -2.13
VPS50-210ENST00000471188 MT1HL1P0DM35 61 aa1.74□□□□□ -2.13
VPS50-210ENST00000471188 KRTAP4-4Q9BYR3 166 aa1.74□□□□□ -2.13
VPS50-210ENST00000471188 KRTAP10-12P60413 245 aa1.73□□□□□ -2.13
VPS50-210ENST00000471188 LCE3CQ5T5A8 94 aa1.73□□□□□ -2.13
VPS50-210ENST00000471188 KRTAP4-1Q9BYQ7 146 aa1.7□□□□□ -2.14
VPS50-210ENST00000471188 MUC2Q02817 5179 aa1.68□□□□□ -2.14
VPS50-210ENST00000471188 KRTAP9-6A8MVA2 160 aa1.66□□□□□ -2.14
VPS50-210ENST00000471188 KRTAP12-3P60328 96 aa1.66□□□□□ -2.14
VPS50-210ENST00000471188 KRTAP8-1Q8IUC2 63 aa1.65□□□□□ -2.15
VPS50-210ENST00000471188 KRTAP10-10P60014 251 aa1.63□□□□□ -2.15
VPS50-210ENST00000471188 M0R2T5 61 aa1.63□□□□□ -2.15
VPS50-210ENST00000471188 KRTAP19-2Q3LHN2 52 aa1.63□□□□□ -2.15
VPS50-210ENST00000471188 AHNAKQ09666 5890 aaKnown RBP1.59□□□□□ -2.15
VPS50-210ENST00000471188 SPRR2GQ9BYE4 73 aa1.59□□□□□ -2.15
VPS50-210ENST00000471188 LCE3EQ5T5B0 92 aa1.58□□□□□ -2.16
VPS50-210ENST00000471188 SSPOA2VEC9 5147 aa1.57□□□□□ -2.16
VPS50-210ENST00000471188 KRTAP4-3Q9BYR4 195 aa1.56□□□□□ -2.16
VPS50-210ENST00000471188 MT1XP80297 61 aa1.52□□□□□ -2.17
VPS50-210ENST00000471188 CRCT1Q9UGL9 99 aa1.52□□□□□ -2.17
VPS50-210ENST00000471188 KRTAP19-5Q3LI72 72 aa1.51□□□□□ -2.17
VPS50-210ENST00000471188 MT1FP04733 61 aa1.5□□□□□ -2.17
VPS50-210ENST00000471188 KMT2DO14686 5537 aa1.5□□□□□ -2.17
VPS50-210ENST00000471188 USH2AO75445 5202 aa1.5□□□□□ -2.17
VPS50-210ENST00000471188 KRTAP5-2Q701N4 177 aa1.49□□□□□ -2.17
VPS50-210ENST00000471188 MT2AP02795 61 aa1.48□□□□□ -2.17
VPS50-210ENST00000471188 KRTAP2-3P0C7H8 128 aa1.48□□□□□ -2.17
VPS50-210ENST00000471188 KRTAP2-4Q9BYR9 128 aa1.48□□□□□ -2.17
VPS50-210ENST00000471188 KRTAP2-1Q9BYU5 128 aa1.48□□□□□ -2.17
VPS50-210ENST00000471188 MT1BP07438 61 aa1.48□□□□□ -2.17
VPS50-210ENST00000471188 MT1HP80294 61 aa1.47□□□□□ -2.17
VPS50-210ENST00000471188 KRTAP19-8Q3LI54 63 aa1.47□□□□□ -2.17
VPS50-210ENST00000471188 KRTAP12-4P60329 112 aa1.46□□□□□ -2.18
VPS50-210ENST00000471188 KRTAP19-6Q3LI70 58 aa1.42□□□□□ -2.18
VPS50-210ENST00000471188 KRTAP6-3Q3LI67 103 aa1.41□□□□□ -2.18
VPS50-210ENST00000471188 FCGBPQ9Y6R7 5405 aaPredicted RBP1.39□□□□□ -2.19
VPS50-210ENST00000471188 SYNE1Q8NF91 8797 aaKnown RBP1.39□□□□□ -2.19
VPS50-210ENST00000471188 NEBP20929 6669 aa1.38□□□□□ -2.19
VPS50-210ENST00000471188 KRTAP19-7Q3SYF9 63 aa1.35□□□□□ -2.19
VPS50-210ENST00000471188 MT1LQ93083 61 aa1.33□□□□□ -2.2
VPS50-210ENST00000471188 MT1GP13640 62 aa1.33□□□□□ -2.2
VPS50-210ENST00000471188 DSTQ03001 7570 aaKnown RBP1.32□□□□□ -2.2
VPS50-210ENST00000471188 KRTAP5-8O75690 187 aa1.32□□□□□ -2.2
VPS50-210ENST00000471188 PRM1P04553 51 aa1.32□□□□□ -2.2
VPS50-210ENST00000471188 MT1EP04732 61 aa1.3□□□□□ -2.2
VPS50-210ENST00000471188 LCE1CQ5T751 118 aa1.3□□□□□ -2.2
VPS50-210ENST00000471188 LCE1BQ5T7P3 118 aa1.3□□□□□ -2.2
VPS50-210ENST00000471188 LCE3DQ9BYE3 92 aa1.28□□□□□ -2.21
VPS50-210ENST00000471188 KRTAP5-5Q701N2 237 aaPredicted RBP1.26□□□□□ -2.21
VPS50-210ENST00000471188 MUC19Q7Z5P9 8384 aa1.26□□□□□ -2.21
VPS50-210ENST00000471188 MUC12Q9UKN1 5478 aa1.25□□□□□ -2.21
VPS50-210ENST00000471188 AHNAK2Q8IVF2 5795 aa1.25□□□□□ -2.21
VPS50-210ENST00000471188 MACF1Q9UPN3 7388 aaKnown RBP1.24□□□□□ -2.21
VPS50-210ENST00000471188 KRTAP20-1Q3LI63 56 aa1.24□□□□□ -2.21
VPS50-210ENST00000471188 FSIP2Q5CZC0 6907 aa1.21□□□□□ -2.22
VPS50-210ENST00000471188 MT1MQ8N339 61 aa1.21□□□□□ -2.22
VPS50-210ENST00000471188 MT1AP04731 61 aa1.19□□□□□ -2.22
VPS50-210ENST00000471188 KRTAP6-2Q3LI66 62 aa1.18□□□□□ -2.22
VPS50-210ENST00000471188 SYNE2Q8WXH0 6885 aaKnown RBP1.18□□□□□ -2.22
VPS50-210ENST00000471188 KRTAP19-3Q7Z4W3 81 aa1.18□□□□□ -2.22
VPS50-210ENST00000471188 KRTAP6-1Q3LI64 71 aa1.16□□□□□ -2.22
VPS50-210ENST00000471188 MDN1Q9NU22 5596 aa1.14□□□□□ -2.23
VPS50-210ENST00000471188 KRTAP5-7Q6L8G8 165 aa1.14□□□□□ -2.23
VPS50-210ENST00000471188 KRTAP5-10Q6L8G5 202 aa1.13□□□□□ -2.23
VPS50-210ENST00000471188 SPRR2FQ96RM1 72 aa1.11□□□□□ -2.23
VPS50-210ENST00000471188 SPRR2EP22531 72 aa1.04□□□□□ -2.24
VPS50-210ENST00000471188 SPRR2BP35325 72 aa1.04□□□□□ -2.24
VPS50-210ENST00000471188 SPRR2AP35326 72 aa1.04□□□□□ -2.24
VPS50-210ENST00000471188 SPRR2DP22532 72 aa1.02□□□□□ -2.25
VPS50-210ENST00000471188 MUC5ACP98088 5654 aa0.98□□□□□ -2.25
VPS50-210ENST00000471188 KRTAP20-2Q3LI61 65 aa0.94□□□□□ -2.26
VPS50-210ENST00000471188 KRTAP21-2Q3LI59 83 aa0.89□□□□□ -2.27
VPS50-210ENST00000471188 MT4P47944 62 aa0.82□□□□□ -2.28
VPS50-210ENST00000471188 KRTAP21-1Q3LI58 79 aa0.81□□□□□ -2.28
VPS50-210ENST00000471188 PHGR1C9JFL3 82 aa0.57□□□□□ -2.32
VPS50-210ENST00000471188 MUC16Q8WXI7 14507 aa0.56□□□□□ -2.32
Retrieved 78 of 20,778 RNA–protein pairs in 82.6 ms