RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 LCE3AQ5TA76 89 aa5.74□□□□□ -1.49
COL9A3-208ENST00000469802 LCE4AQ5TA78 99 aa5.73□□□□□ -1.49
COL9A3-208ENST00000469802 C10orf95Q9H7T3 257 aa5.73□□□□□ -1.49
COL9A3-208ENST00000469802 TNP1P09430 55 aa5.7□□□□□ -1.5
COL9A3-208ENST00000469802 HMCN1Q96RW7 5635 aa5.69□□□□□ -1.5
COL9A3-208ENST00000469802 MIR22HGQ0VDD5 57 aa5.67□□□□□ -1.5
COL9A3-208ENST00000469802 Q1T7F1 81 aa5.67□□□□□ -1.5
COL9A3-208ENST00000469802 KRTAP4-3Q9BYR4 195 aa5.66□□□□□ -1.5
COL9A3-208ENST00000469802 MT4P47944 62 aa5.65□□□□□ -1.5
COL9A3-208ENST00000469802 KRTAP5-4Q6L8H1 288 aa5.65□□□□□ -1.5
COL9A3-208ENST00000469802 PSPHP1O15172 72 aa5.64□□□□□ -1.51
COL9A3-208ENST00000469802 PCP4P48539 62 aa5.6□□□□□ -1.51
COL9A3-208ENST00000469802 K7ERS5 55 aa5.59□□□□□ -1.51
COL9A3-208ENST00000469802 AHNAK2Q8IVF2 5795 aa5.56□□□□□ -1.52
COL9A3-208ENST00000469802 RPS28P62857 69 aaKnown RBP5.53□□□□□ -1.52
COL9A3-208ENST00000469802 KRTAP12-3P60328 96 aa5.52□□□□□ -1.53
COL9A3-208ENST00000469802 KRTAP4-6Q9BYQ5 205 aa5.51□□□□□ -1.53
COL9A3-208ENST00000469802 KRTAP4-7Q9BYR0 210 aa5.5□□□□□ -1.53
COL9A3-208ENST00000469802 A6NED7 52 aa5.49□□□□□ -1.53
COL9A3-208ENST00000469802 KRTAP5-10Q6L8G5 202 aa5.45□□□□□ -1.54
COL9A3-208ENST00000469802 KRTAP25-1Q3LHN0 102 aa5.43□□□□□ -1.54
COL9A3-208ENST00000469802 KRTAP5-5Q701N2 237 aaPredicted RBP5.38□□□□□ -1.55
COL9A3-208ENST00000469802 KRTAP20-2Q3LI61 65 aa5.31□□□□□ -1.56
COL9A3-208ENST00000469802 CDC42SE1Q9NRR8 79 aa5.29□□□□□ -1.56
COL9A3-208ENST00000469802 SPRR5A0A1B0GTR4 108 aa5.28□□□□□ -1.56
COL9A3-208ENST00000469802 KRTAP5-3Q6L8H2 238 aa5.28□□□□□ -1.56
COL9A3-208ENST00000469802 KRTAP23-1A1A580 65 aa5.24□□□□□ -1.57
COL9A3-208ENST00000469802 KRTAP5-7Q6L8G8 165 aa5.24□□□□□ -1.57
COL9A3-208ENST00000469802 LOC100996750A0A140TA64 210 aa5.21□□□□□ -1.58
COL9A3-208ENST00000469802 KRTAP19-4Q3LI73 84 aa5.21□□□□□ -1.58
COL9A3-208ENST00000469802 ROMO1P60602 79 aa5.2□□□□□ -1.58
COL9A3-208ENST00000469802 KRTAP12-4P60329 112 aa5.19□□□□□ -1.58
COL9A3-208ENST00000469802 SYNE1Q8NF91 8797 aaKnown RBP5.13□□□□□ -1.59
COL9A3-208ENST00000469802 KRTAP15-1Q3LI76 137 aa5.11□□□□□ -1.59
COL9A3-208ENST00000469802 LCE3CQ5T5A8 94 aa5.07□□□□□ -1.6
COL9A3-208ENST00000469802 MT1AP04731 61 aa4.94□□□□□ -1.62
COL9A3-208ENST00000469802 KRTAP5-2Q701N4 177 aa4.94□□□□□ -1.62
COL9A3-208ENST00000469802 KRTAP6-1Q3LI64 71 aa4.92□□□□□ -1.62
COL9A3-208ENST00000469802 BRK1Q8WUW1 75 aa4.89□□□□□ -1.63
COL9A3-208ENST00000469802 KRTAP4-11Q9BYQ6 195 aa4.87□□□□□ -1.63
COL9A3-208ENST00000469802 KRTAP9-6A8MVA2 160 aa4.83□□□□□ -1.64
COL9A3-208ENST00000469802 KRTAP9-4Q9BYQ2 154 aa4.77□□□□□ -1.65
COL9A3-208ENST00000469802 KRTAP5-8O75690 187 aa4.72□□□□□ -1.65
COL9A3-208ENST00000469802 KRTAP6-2Q3LI66 62 aa4.7□□□□□ -1.66
COL9A3-208ENST00000469802 PMAIP1Q13794 54 aa4.61□□□□□ -1.67
COL9A3-208ENST00000469802 MUC5ACP98088 5654 aa4.59□□□□□ -1.67
COL9A3-208ENST00000469802 AHNAKQ09666 5890 aaKnown RBP4.59□□□□□ -1.67
COL9A3-208ENST00000469802 MUC5BQ9HC84 5762 aaPredicted RBP4.57□□□□□ -1.68
COL9A3-208ENST00000469802 OBSCNQ5VST9 7968 aa4.54□□□□□ -1.68
COL9A3-208ENST00000469802 MT3P25713 68 aa4.49□□□□□ -1.69
COL9A3-208ENST00000469802 KRTAP9-9Q9BYP9 154 aa4.46□□□□□ -1.7
COL9A3-208ENST00000469802 KRTAP5-1Q6L8H4 278 aa4.44□□□□□ -1.7
COL9A3-208ENST00000469802 PRO0628Q9UI54 55 aa4.39□□□□□ -1.71
COL9A3-208ENST00000469802 PRAC1Q96KF2 57 aa4.36□□□□□ -1.71
COL9A3-208ENST00000469802 LCE1EQ5T753 118 aa4.19□□□□□ -1.74
COL9A3-208ENST00000469802 KTN1-AS1Q86SY8 53 aa4.18□□□□□ -1.74
COL9A3-208ENST00000469802 SVIPQ8NHG7 77 aa4.01□□□□□ -1.77
COL9A3-208ENST00000469802 KRTAP4-2Q9BYR5 136 aa3.99□□□□□ -1.77
COL9A3-208ENST00000469802 LCE1BQ5T7P3 118 aa3.9□□□□□ -1.79
COL9A3-208ENST00000469802 LCE1CQ5T751 118 aa3.89□□□□□ -1.79
COL9A3-208ENST00000469802 LUZP6Q538Z0 58 aa3.75□□□□□ -1.81
COL9A3-208ENST00000469802 LCE3DQ9BYE3 92 aa3.61□□□□□ -1.83
COL9A3-208ENST00000469802 KRTAP4-12Q9BQ66 201 aa3.59□□□□□ -1.83
COL9A3-208ENST00000469802 KRTAP5-11Q6L8G4 156 aa3.55□□□□□ -1.84
COL9A3-208ENST00000469802 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.55□□□□□ -1.84
COL9A3-208ENST00000469802 LCE1FQ5T754 118 aa3.46□□□□□ -1.86
COL9A3-208ENST00000469802 LCE3EQ5T5B0 92 aa3.42□□□□□ -1.86
COL9A3-208ENST00000469802 KRTAP21-2Q3LI59 83 aa3.26□□□□□ -1.89
COL9A3-208ENST00000469802 PHGR1C9JFL3 82 aa3.14□□□□□ -1.91
COL9A3-208ENST00000469802 NDUFAF8A1L188 74 aa3.09□□□□□ -1.91
COL9A3-208ENST00000469802 KRTAP4-4Q9BYR3 166 aa2.95□□□□□ -1.94
COL9A3-208ENST00000469802 MUC19Q7Z5P9 8384 aa2.83□□□□□ -1.96
COL9A3-208ENST00000469802 PRM1P04553 51 aa2.65□□□□□ -1.99
COL9A3-208ENST00000469802 A0A0A0MQY5 61 aa2.57□□□□□ -2
COL9A3-208ENST00000469802 INE1O15225 51 aa2.55□□□□□ -2
COL9A3-208ENST00000469802 H3BS24 57 aa2.41□□□□□ -2.02
COL9A3-208ENST00000469802 KRTAP21-1Q3LI58 79 aa2.39□□□□□ -2.03
COL9A3-208ENST00000469802 MUC16Q8WXI7 14507 aa2.06□□□□□ -2.08
Retrieved 78 of 20,778 RNA–protein pairs in 9.8 ms