RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 H0Y9P7 68 aa1.74□□□□□ -2.13
PTPN4-209ENST00000469511 KRTAP13-4Q3LI77 160 aa1.74□□□□□ -2.13
PTPN4-209ENST00000469511 KRTAP12-4P60329 112 aa1.73□□□□□ -2.13
PTPN4-209ENST00000469511 UBL5Q9BZL1 73 aa1.73□□□□□ -2.13
PTPN4-209ENST00000469511 FAM240AA0A1B0GVK7 77 aa1.7□□□□□ -2.14
PTPN4-209ENST00000469511 C10orf95Q9H7T3 257 aa1.7□□□□□ -2.14
PTPN4-209ENST00000469511 V9GYY9 64 aa1.7□□□□□ -2.14
PTPN4-209ENST00000469511 LINC00208Q96KT6 92 aa1.69□□□□□ -2.14
PTPN4-209ENST00000469511 PRO0628Q9UI54 55 aa1.69□□□□□ -2.14
PTPN4-209ENST00000469511 M0R143 59 aa1.68□□□□□ -2.14
PTPN4-209ENST00000469511 UQCRQO14949 82 aa1.68□□□□□ -2.14
PTPN4-209ENST00000469511 KRTAP5-2Q701N4 177 aa1.68□□□□□ -2.14
PTPN4-209ENST00000469511 TAX1BP3O14907 124 aa1.67□□□□□ -2.14
PTPN4-209ENST00000469511 ATOX1O00244 68 aa1.66□□□□□ -2.14
PTPN4-209ENST00000469511 DMAC1Q96GE9 116 aa1.66□□□□□ -2.14
PTPN4-209ENST00000469511 LCE1CQ5T751 118 aa1.64□□□□□ -2.15
PTPN4-209ENST00000469511 LCE1BQ5T7P3 118 aa1.64□□□□□ -2.15
PTPN4-209ENST00000469511 OBSCNQ5VST9 7968 aa1.63□□□□□ -2.15
PTPN4-209ENST00000469511 HIST1H4AP62805 103 aaKnown RBP1.6□□□□□ -2.15
PTPN4-209ENST00000469511 KRTAP6-1Q3LI64 71 aa1.6□□□□□ -2.15
PTPN4-209ENST00000469511 TRAV7A0A075B6U4 112 aa1.58□□□□□ -2.16
PTPN4-209ENST00000469511 K7ERS5 55 aa1.57□□□□□ -2.16
PTPN4-209ENST00000469511 KRTAP12-1P59990 96 aa1.57□□□□□ -2.16
PTPN4-209ENST00000469511 KRTAP12-3P60328 96 aa1.57□□□□□ -2.16
PTPN4-209ENST00000469511 MP68P56378 58 aa1.56□□□□□ -2.16
PTPN4-209ENST00000469511 KRTAP6-2Q3LI66 62 aa1.56□□□□□ -2.16
PTPN4-209ENST00000469511 ETDBQ3ZM63 59 aa1.56□□□□□ -2.16
PTPN4-209ENST00000469511 SPATA8Q6RVD6 105 aa1.56□□□□□ -2.16
PTPN4-209ENST00000469511 KRTAP25-1Q3LHN0 102 aa1.55□□□□□ -2.16
PTPN4-209ENST00000469511 ANAPC13Q9BS18 74 aa1.55□□□□□ -2.16
PTPN4-209ENST00000469511 MT1AP04731 61 aa1.54□□□□□ -2.16
PTPN4-209ENST00000469511 ACYP2P14621 99 aa1.54□□□□□ -2.16
PTPN4-209ENST00000469511 A0A1B0GU33 70 aa1.52□□□□□ -2.17
PTPN4-209ENST00000469511 SPTSSBQ8NFR3 76 aa1.51□□□□□ -2.17
PTPN4-209ENST00000469511 CHKB-CPT1BH3BT56 60 aa1.5□□□□□ -2.17
PTPN4-209ENST00000469511 TNP1P09430 55 aa1.5□□□□□ -2.17
PTPN4-209ENST00000469511 H3BPC8 53 aa1.49□□□□□ -2.17
PTPN4-209ENST00000469511 ATP5EP2Q5VTU8 51 aa1.49□□□□□ -2.17
PTPN4-209ENST00000469511 A6NED7 52 aa1.48□□□□□ -2.17
PTPN4-209ENST00000469511 F8W1H4 67 aa1.46□□□□□ -2.18
PTPN4-209ENST00000469511 SMIM6P0DI80 62 aa1.45□□□□□ -2.18
PTPN4-209ENST00000469511 LINC00643Q86TS7 51 aa1.44□□□□□ -2.18
PTPN4-209ENST00000469511 COL5A1-AS1Q5SY13 56 aa1.42□□□□□ -2.18
PTPN4-209ENST00000469511 GTF2H5Q6ZYL4 71 aa1.41□□□□□ -2.18
PTPN4-209ENST00000469511 SCGB1A1P11684 91 aa1.38□□□□□ -2.19
PTPN4-209ENST00000469511 SNURFQ9Y675 71 aa1.38□□□□□ -2.19
PTPN4-209ENST00000469511 SERP1Q9Y6X1 66 aa1.38□□□□□ -2.19
PTPN4-209ENST00000469511 COA5Q86WW8 74 aa1.35□□□□□ -2.19
PTPN4-209ENST00000469511 LOC105371267A0A1B0GV96 52 aa1.34□□□□□ -2.19
PTPN4-209ENST00000469511 SERP2Q8N6R1 65 aa1.26□□□□□ -2.21
PTPN4-209ENST00000469511 MUC19Q7Z5P9 8384 aa1.25□□□□□ -2.21
PTPN4-209ENST00000469511 A0A1B0GU69 56 aa1.25□□□□□ -2.21
PTPN4-209ENST00000469511 PHGR1C9JFL3 82 aa1.25□□□□□ -2.21
PTPN4-209ENST00000469511 SMIM20Q8N5G0 67 aa1.22□□□□□ -2.21
PTPN4-209ENST00000469511 A0A1B0GV90 55 aa1.15□□□□□ -2.23
PTPN4-209ENST00000469511 KRTAP21-2Q3LI59 83 aa1.15□□□□□ -2.23
PTPN4-209ENST00000469511 H7BZZ5 65 aa1.14□□□□□ -2.23
PTPN4-209ENST00000469511 TMEM258P61165 79 aa1.13□□□□□ -2.23
PTPN4-209ENST00000469511 PRR15LQ9BU68 103 aa1.13□□□□□ -2.23
PTPN4-209ENST00000469511 J3QR89 54 aa1.12□□□□□ -2.23
PTPN4-209ENST00000469511 KTN1-AS1Q86SY8 53 aa1.11□□□□□ -2.23
PTPN4-209ENST00000469511 PMAIP1Q13794 54 aa1.07□□□□□ -2.24
PTPN4-209ENST00000469511 LINC01558Q9Y6Z2 57 aa1.07□□□□□ -2.24
PTPN4-209ENST00000469511 UQCR11O14957 56 aa1.06□□□□□ -2.24
PTPN4-209ENST00000469511 Q1T7F1 81 aa1.05□□□□□ -2.24
PTPN4-209ENST00000469511 COX7CP15954 63 aa1.04□□□□□ -2.24
PTPN4-209ENST00000469511 RPS28P62857 69 aaKnown RBP1.04□□□□□ -2.24
PTPN4-209ENST00000469511 MIR22HGQ0VDD5 57 aa1.04□□□□□ -2.24
PTPN4-209ENST00000469511 K7ERU9 68 aa0.96□□□□□ -2.26
PTPN4-209ENST00000469511 ROMO1P60602 79 aa0.94□□□□□ -2.26
PTPN4-209ENST00000469511 CDC42SE1Q9NRR8 79 aa0.94□□□□□ -2.26
PTPN4-209ENST00000469511 KRTAP21-1Q3LI58 79 aa0.91□□□□□ -2.26
PTPN4-209ENST00000469511 CCDC179H3BU77 68 aa0.9□□□□□ -2.27
PTPN4-209ENST00000469511 ATP5EP56381 51 aaPredicted RBP0.84□□□□□ -2.27
PTPN4-209ENST00000469511 INE1O15225 51 aa0.8□□□□□ -2.28
PTPN4-209ENST00000469511 MUC16Q8WXI7 14507 aa0.75□□□□□ -2.29
PTPN4-209ENST00000469511 PRM1P04553 51 aa0.5□□□□□ -2.33
PTPN4-209ENST00000469511 BRK1Q8WUW1 75 aa0.37□□□□□ -2.35
Retrieved 78 of 20,778 RNA–protein pairs in 118.7 ms