RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 A0A0D9SG42 100 aa2.58□□□□□ -2
SYNE1-219ENST00000469439 CAMK2N1Q7Z7J9 78 aa2.58□□□□□ -2
SYNE1-219ENST00000469439 BRK1Q8WUW1 75 aa2.58□□□□□ -2
SYNE1-219ENST00000469439 PRO2289Q9P1D8 64 aa2.58□□□□□ -2
SYNE1-219ENST00000469439 SPINT4Q6UDR6 99 aa2.57□□□□□ -2
SYNE1-219ENST00000469439 KRTAP19-8Q3LI54 63 aa2.55□□□□□ -2
SYNE1-219ENST00000469439 LCE1CQ5T751 118 aa2.54□□□□□ -2
SYNE1-219ENST00000469439 LCE1BQ5T7P3 118 aa2.54□□□□□ -2
SYNE1-219ENST00000469439 KRTAP13-4Q3LI77 160 aa2.53□□□□□ -2
SYNE1-219ENST00000469439 PRO0628Q9UI54 55 aa2.53□□□□□ -2
SYNE1-219ENST00000469439 KRTAP12-1P59990 96 aa2.51□□□□□ -2.01
SYNE1-219ENST00000469439 PMAIP1Q13794 54 aa2.48□□□□□ -2.01
SYNE1-219ENST00000469439 TNP1P09430 55 aa2.46□□□□□ -2.02
SYNE1-219ENST00000469439 MT1BP07438 61 aa2.45□□□□□ -2.02
SYNE1-219ENST00000469439 ROMO1P60602 79 aa2.45□□□□□ -2.02
SYNE1-219ENST00000469439 FSIP2Q5CZC0 6907 aa2.44□□□□□ -2.02
SYNE1-219ENST00000469439 KRTAP25-1Q3LHN0 102 aa2.44□□□□□ -2.02
SYNE1-219ENST00000469439 CRCT1Q9UGL9 99 aa2.43□□□□□ -2.02
SYNE1-219ENST00000469439 KRTAP19-6Q3LI70 58 aa2.42□□□□□ -2.02
SYNE1-219ENST00000469439 PP632Q6XCG6 107 aa2.4□□□□□ -2.03
SYNE1-219ENST00000469439 MT1XP80297 61 aa2.36□□□□□ -2.03
SYNE1-219ENST00000469439 LCE3DQ9BYE3 92 aa2.36□□□□□ -2.03
SYNE1-219ENST00000469439 KRTAP5-8O75690 187 aa2.35□□□□□ -2.03
SYNE1-219ENST00000469439 KTN1-AS1Q86SY8 53 aa2.34□□□□□ -2.03
SYNE1-219ENST00000469439 C10orf95Q9H7T3 257 aa2.34□□□□□ -2.03
SYNE1-219ENST00000469439 KRTAP8-1Q8IUC2 63 aa2.25□□□□□ -2.05
SYNE1-219ENST00000469439 USH2AO75445 5202 aa2.2□□□□□ -2.06
SYNE1-219ENST00000469439 KRTAP12-3P60328 96 aa2.19□□□□□ -2.06
SYNE1-219ENST00000469439 SSPOA2VEC9 5147 aa2.18□□□□□ -2.06
SYNE1-219ENST00000469439 MUC19Q7Z5P9 8384 aa2.17□□□□□ -2.06
SYNE1-219ENST00000469439 KRTAP6-3Q3LI67 103 aa2.17□□□□□ -2.06
SYNE1-219ENST00000469439 FCGBPQ9Y6R7 5405 aaPredicted RBP2.14□□□□□ -2.07
SYNE1-219ENST00000469439 SYNE2Q8WXH0 6885 aaKnown RBP2.14□□□□□ -2.07
SYNE1-219ENST00000469439 SPRR2FQ96RM1 72 aa2.14□□□□□ -2.07
SYNE1-219ENST00000469439 KRTAP19-5Q3LI72 72 aa2.13□□□□□ -2.07
SYNE1-219ENST00000469439 KRTAP5-7Q6L8G8 165 aa2.11□□□□□ -2.07
SYNE1-219ENST00000469439 MT1EP04732 61 aa2.1□□□□□ -2.07
SYNE1-219ENST00000469439 MT1GP13640 62 aa2.1□□□□□ -2.07
SYNE1-219ENST00000469439 KRTAP19-7Q3SYF9 63 aa2.1□□□□□ -2.07
SYNE1-219ENST00000469439 MACF1Q9UPN3 7388 aaKnown RBP2.08□□□□□ -2.08
SYNE1-219ENST00000469439 KRTAP19-3Q7Z4W3 81 aa2.07□□□□□ -2.08
SYNE1-219ENST00000469439 SPRR2EP22531 72 aa2.06□□□□□ -2.08
SYNE1-219ENST00000469439 SPRR2BP35325 72 aa2.06□□□□□ -2.08
SYNE1-219ENST00000469439 SPRR2AP35326 72 aa2.06□□□□□ -2.08
SYNE1-219ENST00000469439 NEBP20929 6669 aa2.06□□□□□ -2.08
SYNE1-219ENST00000469439 LUZP6Q538Z0 58 aa2.05□□□□□ -2.08
SYNE1-219ENST00000469439 MT1LQ93083 61 aa2.05□□□□□ -2.08
SYNE1-219ENST00000469439 KRTAP20-1Q3LI63 56 aa2.02□□□□□ -2.09
SYNE1-219ENST00000469439 SPRR2DP22532 72 aa2□□□□□ -2.09
SYNE1-219ENST00000469439 MUC12Q9UKN1 5478 aa1.99□□□□□ -2.09
SYNE1-219ENST00000469439 SPRR5A0A1B0GTR4 108 aa1.98□□□□□ -2.09
SYNE1-219ENST00000469439 MT1MQ8N339 61 aa1.97□□□□□ -2.09
SYNE1-219ENST00000469439 GPR98Q8WXG9 6306 aa1.95□□□□□ -2.1
SYNE1-219ENST00000469439 KMT2DO14686 5537 aa1.94□□□□□ -2.1
SYNE1-219ENST00000469439 KRTAP2-3P0C7H8 128 aa1.94□□□□□ -2.1
SYNE1-219ENST00000469439 KRTAP2-4Q9BYR9 128 aa1.94□□□□□ -2.1
SYNE1-219ENST00000469439 MDN1Q9NU22 5596 aa1.91□□□□□ -2.1
SYNE1-219ENST00000469439 KRTAP2-1Q9BYU5 128 aa1.9□□□□□ -2.11
SYNE1-219ENST00000469439 KRTAP21-2Q3LI59 83 aa1.83□□□□□ -2.12
SYNE1-219ENST00000469439 KRTAP12-4P60329 112 aa1.82□□□□□ -2.12
SYNE1-219ENST00000469439 MT1AP04731 61 aa1.78□□□□□ -2.12
SYNE1-219ENST00000469439 DSTQ03001 7570 aaKnown RBP1.73□□□□□ -2.13
SYNE1-219ENST00000469439 MT4P47944 62 aa1.68□□□□□ -2.14
SYNE1-219ENST00000469439 KRTAP6-1Q3LI64 71 aa1.68□□□□□ -2.14
SYNE1-219ENST00000469439 HMCN1Q96RW7 5635 aa1.65□□□□□ -2.14
SYNE1-219ENST00000469439 KRTAP20-2Q3LI61 65 aa1.64□□□□□ -2.15
SYNE1-219ENST00000469439 AHNAK2Q8IVF2 5795 aa1.63□□□□□ -2.15
SYNE1-219ENST00000469439 KRTAP5-10Q6L8G5 202 aa1.62□□□□□ -2.15
SYNE1-219ENST00000469439 INE1O15225 51 aa1.6□□□□□ -2.15
SYNE1-219ENST00000469439 KRTAP6-2Q3LI66 62 aa1.59□□□□□ -2.15
SYNE1-219ENST00000469439 AHNAKQ09666 5890 aaKnown RBP1.47□□□□□ -2.17
SYNE1-219ENST00000469439 SYNE1Q8NF91 8797 aaKnown RBP1.46□□□□□ -2.18
SYNE1-219ENST00000469439 MUC5BQ9HC84 5762 aaPredicted RBP1.42□□□□□ -2.18
SYNE1-219ENST00000469439 MUC5ACP98088 5654 aa1.4□□□□□ -2.18
SYNE1-219ENST00000469439 PRM1P04553 51 aa1.21□□□□□ -2.22
SYNE1-219ENST00000469439 PHGR1C9JFL3 82 aa1.01□□□□□ -2.25
SYNE1-219ENST00000469439 MUC16Q8WXI7 14507 aa0.96□□□□□ -2.26
SYNE1-219ENST00000469439 KRTAP21-1Q3LI58 79 aa0.74□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 62.8 ms