RNA–Protein interactions for RNA: ENST00000468937.2

SYNE1-218, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 688 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-218ENST00000468937 COA5Q86WW8 74 aa1.72□□□□□ -2.13
SYNE1-218ENST00000468937 SERP1Q9Y6X1 66 aa1.71□□□□□ -2.14
SYNE1-218ENST00000468937 RPS28P62857 69 aaKnown RBP1.7□□□□□ -2.14
SYNE1-218ENST00000468937 S4R3F8 94 aa1.7□□□□□ -2.14
SYNE1-218ENST00000468937 CHKB-CPT1BH3BT56 60 aa1.68□□□□□ -2.14
SYNE1-218ENST00000468937 KRTAP25-1Q3LHN0 102 aa1.67□□□□□ -2.14
SYNE1-218ENST00000468937 KTN1-AS1Q86SY8 53 aa1.67□□□□□ -2.14
SYNE1-218ENST00000468937 MT2AP02795 61 aa1.66□□□□□ -2.14
SYNE1-218ENST00000468937 CSAG1Q6PB30 78 aa1.66□□□□□ -2.14
SYNE1-218ENST00000468937 SPTSSBQ8NFR3 76 aa1.66□□□□□ -2.14
SYNE1-218ENST00000468937 NEBP20929 6669 aa1.65□□□□□ -2.14
SYNE1-218ENST00000468937 A0A1B0GU33 70 aa1.65□□□□□ -2.15
SYNE1-218ENST00000468937 H0YAA0 97 aa1.65□□□□□ -2.15
SYNE1-218ENST00000468937 Q1T7F1 81 aa1.65□□□□□ -2.15
SYNE1-218ENST00000468937 KRTAP19-6Q3LI70 58 aa1.65□□□□□ -2.15
SYNE1-218ENST00000468937 LINC01558Q9Y6Z2 57 aa1.65□□□□□ -2.15
SYNE1-218ENST00000468937 MT1FP04733 61 aa1.64□□□□□ -2.15
SYNE1-218ENST00000468937 MUC12Q9UKN1 5478 aa1.64□□□□□ -2.15
SYNE1-218ENST00000468937 LINC01554Q52M75 96 aa1.63□□□□□ -2.15
SYNE1-218ENST00000468937 A0A1B0GU69 56 aa1.61□□□□□ -2.15
SYNE1-218ENST00000468937 Q5VV11 94 aa1.61□□□□□ -2.15
SYNE1-218ENST00000468937 PRR15LQ9BU68 103 aa1.61□□□□□ -2.15
SYNE1-218ENST00000468937 MDN1Q9NU22 5596 aa1.61□□□□□ -2.15
SYNE1-218ENST00000468937 SPRR2GQ9BYE4 73 aa1.58□□□□□ -2.16
SYNE1-218ENST00000468937 SPATA8Q6RVD6 105 aa1.57□□□□□ -2.16
SYNE1-218ENST00000468937 CRIPTQ9P021 101 aa1.57□□□□□ -2.16
SYNE1-218ENST00000468937 M0QZ58 72 aa1.56□□□□□ -2.16
SYNE1-218ENST00000468937 UQCR11O14957 56 aa1.56□□□□□ -2.16
SYNE1-218ENST00000468937 KRTAP20-1Q3LI63 56 aa1.56□□□□□ -2.16
SYNE1-218ENST00000468937 KMT2DO14686 5537 aa1.56□□□□□ -2.16
SYNE1-218ENST00000468937 MT1BP07438 61 aa1.54□□□□□ -2.16
SYNE1-218ENST00000468937 MIR22HGQ0VDD5 57 aa1.54□□□□□ -2.16
SYNE1-218ENST00000468937 KRTAP19-8Q3LI54 63 aa1.54□□□□□ -2.16
SYNE1-218ENST00000468937 BRK1Q8WUW1 75 aa1.54□□□□□ -2.16
SYNE1-218ENST00000468937 A6NN06 94 aa1.53□□□□□ -2.16
SYNE1-218ENST00000468937 CDC42SE1Q9NRR8 79 aa1.53□□□□□ -2.16
SYNE1-218ENST00000468937 A0A0D9SG42 100 aa1.51□□□□□ -2.17
SYNE1-218ENST00000468937 PRO2289Q9P1D8 64 aa1.5□□□□□ -2.17
SYNE1-218ENST00000468937 KRTAP2-3P0C7H8 128 aa1.49□□□□□ -2.17
SYNE1-218ENST00000468937 KRTAP2-4Q9BYR9 128 aa1.49□□□□□ -2.17
SYNE1-218ENST00000468937 MT1XP80297 61 aa1.47□□□□□ -2.17
SYNE1-218ENST00000468937 PLAC4Q8WY50 150 aa1.47□□□□□ -2.17
SYNE1-218ENST00000468937 ROMO1P60602 79 aa1.45□□□□□ -2.18
SYNE1-218ENST00000468937 KRTAP2-1Q9BYU5 128 aa1.44□□□□□ -2.18
SYNE1-218ENST00000468937 C10orf95Q9H7T3 257 aa1.44□□□□□ -2.18
SYNE1-218ENST00000468937 SPRR2EP22531 72 aa1.43□□□□□ -2.18
SYNE1-218ENST00000468937 SPRR2BP35325 72 aa1.43□□□□□ -2.18
SYNE1-218ENST00000468937 SPRR2AP35326 72 aa1.43□□□□□ -2.18
SYNE1-218ENST00000468937 SPRR2FQ96RM1 72 aa1.43□□□□□ -2.18
SYNE1-218ENST00000468937 SPRR2DP22532 72 aa1.39□□□□□ -2.19
SYNE1-218ENST00000468937 KRTAP8-1Q8IUC2 63 aa1.39□□□□□ -2.19
SYNE1-218ENST00000468937 GPR98Q8WXG9 6306 aa1.38□□□□□ -2.19
SYNE1-218ENST00000468937 DSTQ03001 7570 aaKnown RBP1.38□□□□□ -2.19
SYNE1-218ENST00000468937 TNP1P09430 55 aa1.38□□□□□ -2.19
SYNE1-218ENST00000468937 HMCN1Q96RW7 5635 aa1.35□□□□□ -2.19
SYNE1-218ENST00000468937 KRTAP19-7Q3SYF9 63 aa1.32□□□□□ -2.2
SYNE1-218ENST00000468937 KRTAP19-5Q3LI72 72 aa1.3□□□□□ -2.2
SYNE1-218ENST00000468937 INE1O15225 51 aa1.29□□□□□ -2.2
SYNE1-218ENST00000468937 AHNAK2Q8IVF2 5795 aa1.29□□□□□ -2.2
SYNE1-218ENST00000468937 MT1EP04732 61 aa1.28□□□□□ -2.2
SYNE1-218ENST00000468937 KRTAP19-3Q7Z4W3 81 aa1.25□□□□□ -2.21
SYNE1-218ENST00000468937 MT1LQ93083 61 aa1.25□□□□□ -2.21
SYNE1-218ENST00000468937 KRTAP5-10Q6L8G5 202 aa1.24□□□□□ -2.21
SYNE1-218ENST00000468937 MT1GP13640 62 aa1.22□□□□□ -2.21
SYNE1-218ENST00000468937 MT1MQ8N339 61 aa1.22□□□□□ -2.21
SYNE1-218ENST00000468937 MT4P47944 62 aa1.2□□□□□ -2.22
SYNE1-218ENST00000468937 MUC16Q8WXI7 14507 aa1.19□□□□□ -2.22
SYNE1-218ENST00000468937 KRTAP20-2Q3LI61 65 aa1.13□□□□□ -2.23
SYNE1-218ENST00000468937 SYNE1Q8NF91 8797 aaKnown RBP1.13□□□□□ -2.23
SYNE1-218ENST00000468937 MUC5BQ9HC84 5762 aaPredicted RBP1.13□□□□□ -2.23
SYNE1-218ENST00000468937 AHNAKQ09666 5890 aaKnown RBP1.12□□□□□ -2.23
SYNE1-218ENST00000468937 MUC5ACP98088 5654 aa1.09□□□□□ -2.23
SYNE1-218ENST00000468937 MT1AP04731 61 aa1.07□□□□□ -2.24
SYNE1-218ENST00000468937 KRTAP6-1Q3LI64 71 aa1.06□□□□□ -2.24
SYNE1-218ENST00000468937 KRTAP6-2Q3LI66 62 aa0.97□□□□□ -2.25
SYNE1-218ENST00000468937 PRM1P04553 51 aa0.74□□□□□ -2.29
SYNE1-218ENST00000468937 PHGR1C9JFL3 82 aa0.72□□□□□ -2.29
SYNE1-218ENST00000468937 KRTAP21-1Q3LI58 79 aa0.57□□□□□ -2.32
Retrieved 78 of 20,778 RNA–protein pairs in 68.3 ms