RNA–Protein interactions for RNA: ENST00000468925.1

SF3B1-207, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 510 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-207ENST00000468925 LRP1BQ9NZR2 4599 aa2.15□□□□□ -2.07
SF3B1-207ENST00000468925 DNAH5Q8TE73 4624 aa2.14□□□□□ -2.07
SF3B1-207ENST00000468925 FAT1Q14517 4588 aa2.12□□□□□ -2.07
SF3B1-207ENST00000468925 KRTAP10-4P60372 401 aaPredicted RBP2.1□□□□□ -2.07
SF3B1-207ENST00000468925 LRP1Q07954 4544 aaKnown RBP2.09□□□□□ -2.08
SF3B1-207ENST00000468925 LCE1CQ5T751 118 aa2.08□□□□□ -2.08
SF3B1-207ENST00000468925 LCE1BQ5T7P3 118 aa2.08□□□□□ -2.08
SF3B1-207ENST00000468925 TNXBP22105 4242 aa2.06□□□□□ -2.08
SF3B1-207ENST00000468925 CRCT1Q9UGL9 99 aa2.04□□□□□ -2.08
SF3B1-207ENST00000468925 SMR3BP02814 79 aaPredicted RBP2.02□□□□□ -2.09
SF3B1-207ENST00000468925 FAT3Q8TDW7 4589 aa2.01□□□□□ -2.09
SF3B1-207ENST00000468925 KRTAP8-1Q8IUC2 63 aa1.98□□□□□ -2.09
SF3B1-207ENST00000468925 FLGP20930 4061 aaPredicted RBP1.98□□□□□ -2.09
SF3B1-207ENST00000468925 SYNE2Q8WXH0 6885 aaKnown RBP1.97□□□□□ -2.09
SF3B1-207ENST00000468925 KRTAP10-10P60014 251 aa1.94□□□□□ -2.1
SF3B1-207ENST00000468925 SSPOA2VEC9 5147 aa1.92□□□□□ -2.1
SF3B1-207ENST00000468925 NEBP20929 6669 aa1.91□□□□□ -2.1
SF3B1-207ENST00000468925 LPAP08519 4548 aa1.9□□□□□ -2.11
SF3B1-207ENST00000468925 SPRR2GQ9BYE4 73 aa1.89□□□□□ -2.11
SF3B1-207ENST00000468925 MACF1Q9UPN3 7388 aaKnown RBP1.89□□□□□ -2.11
SF3B1-207ENST00000468925 MT1HL1P0DM35 61 aa1.88□□□□□ -2.11
SF3B1-207ENST00000468925 KRTAP12-3P60328 96 aa1.88□□□□□ -2.11
SF3B1-207ENST00000468925 USH2AO75445 5202 aa1.87□□□□□ -2.11
SF3B1-207ENST00000468925 MUC19Q7Z5P9 8384 aa1.84□□□□□ -2.12
SF3B1-207ENST00000468925 FCGBPQ9Y6R7 5405 aaPredicted RBP1.84□□□□□ -2.12
SF3B1-207ENST00000468925 GPR98Q8WXG9 6306 aa1.83□□□□□ -2.12
SF3B1-207ENST00000468925 KRTAP19-2Q3LHN2 52 aa1.82□□□□□ -2.12
SF3B1-207ENST00000468925 KRTAP2-3P0C7H8 128 aa1.81□□□□□ -2.12
SF3B1-207ENST00000468925 LCE3DQ9BYE3 92 aa1.81□□□□□ -2.12
SF3B1-207ENST00000468925 KRTAP2-4Q9BYR9 128 aa1.81□□□□□ -2.12
SF3B1-207ENST00000468925 KRTAP2-1Q9BYU5 128 aa1.81□□□□□ -2.12
SF3B1-207ENST00000468925 M0R2T5 61 aa1.8□□□□□ -2.12
SF3B1-207ENST00000468925 KRTAP19-8Q3LI54 63 aa1.76□□□□□ -2.13
SF3B1-207ENST00000468925 MUC17Q685J3 4493 aa1.75□□□□□ -2.13
SF3B1-207ENST00000468925 KRTAP4-1Q9BYQ7 146 aa1.73□□□□□ -2.13
SF3B1-207ENST00000468925 KRTAP20-1Q3LI63 56 aa1.72□□□□□ -2.13
SF3B1-207ENST00000468925 MUC12Q9UKN1 5478 aa1.72□□□□□ -2.13
SF3B1-207ENST00000468925 KRTAP5-7Q6L8G8 165 aa1.71□□□□□ -2.14
SF3B1-207ENST00000468925 KMT2DO14686 5537 aa1.71□□□□□ -2.14
SF3B1-207ENST00000468925 MT1XP80297 61 aa1.67□□□□□ -2.14
SF3B1-207ENST00000468925 MDN1Q9NU22 5596 aa1.66□□□□□ -2.14
SF3B1-207ENST00000468925 KRTAP6-3Q3LI67 103 aa1.66□□□□□ -2.14
SF3B1-207ENST00000468925 KRTAP19-5Q3LI72 72 aa1.65□□□□□ -2.15
SF3B1-207ENST00000468925 MT1HP80294 61 aa1.62□□□□□ -2.15
SF3B1-207ENST00000468925 MT1BP07438 61 aa1.61□□□□□ -2.15
SF3B1-207ENST00000468925 KRTAP12-4P60329 112 aa1.61□□□□□ -2.15
SF3B1-207ENST00000468925 MT2AP02795 61 aa1.59□□□□□ -2.15
SF3B1-207ENST00000468925 MT1EP04732 61 aa1.58□□□□□ -2.16
SF3B1-207ENST00000468925 MT1FP04733 61 aa1.57□□□□□ -2.16
SF3B1-207ENST00000468925 KRTAP21-2Q3LI59 83 aa1.56□□□□□ -2.16
SF3B1-207ENST00000468925 AHNAK2Q8IVF2 5795 aa1.55□□□□□ -2.16
SF3B1-207ENST00000468925 MT1AP04731 61 aa1.55□□□□□ -2.16
SF3B1-207ENST00000468925 MT1LQ93083 61 aa1.55□□□□□ -2.16
SF3B1-207ENST00000468925 HMCN1Q96RW7 5635 aa1.55□□□□□ -2.16
SF3B1-207ENST00000468925 DSTQ03001 7570 aaKnown RBP1.51□□□□□ -2.17
SF3B1-207ENST00000468925 KRTAP19-6Q3LI70 58 aa1.5□□□□□ -2.17
SF3B1-207ENST00000468925 KRTAP19-7Q3SYF9 63 aa1.48□□□□□ -2.17
SF3B1-207ENST00000468925 PRM1P04553 51 aa1.42□□□□□ -2.18
SF3B1-207ENST00000468925 AHNAKQ09666 5890 aaKnown RBP1.42□□□□□ -2.18
SF3B1-207ENST00000468925 MT1GP13640 62 aa1.4□□□□□ -2.19
SF3B1-207ENST00000468925 SPRR2EP22531 72 aa1.4□□□□□ -2.19
SF3B1-207ENST00000468925 SPRR2BP35325 72 aa1.4□□□□□ -2.19
SF3B1-207ENST00000468925 SPRR2AP35326 72 aa1.4□□□□□ -2.19
SF3B1-207ENST00000468925 KRTAP5-10Q6L8G5 202 aa1.37□□□□□ -2.19
SF3B1-207ENST00000468925 SPRR2FQ96RM1 72 aa1.37□□□□□ -2.19
SF3B1-207ENST00000468925 MUC5BQ9HC84 5762 aaPredicted RBP1.36□□□□□ -2.19
SF3B1-207ENST00000468925 SPRR2DP22532 72 aa1.35□□□□□ -2.19
SF3B1-207ENST00000468925 KRTAP19-3Q7Z4W3 81 aa1.34□□□□□ -2.19
SF3B1-207ENST00000468925 MT1MQ8N339 61 aa1.34□□□□□ -2.19
SF3B1-207ENST00000468925 MUC5ACP98088 5654 aa1.3□□□□□ -2.2
SF3B1-207ENST00000468925 KRTAP6-2Q3LI66 62 aa1.29□□□□□ -2.2
SF3B1-207ENST00000468925 SYNE1Q8NF91 8797 aaKnown RBP1.26□□□□□ -2.21
SF3B1-207ENST00000468925 MT4P47944 62 aa1.22□□□□□ -2.21
SF3B1-207ENST00000468925 KRTAP6-1Q3LI64 71 aa1.21□□□□□ -2.22
SF3B1-207ENST00000468925 KRTAP20-2Q3LI61 65 aa1.05□□□□□ -2.24
SF3B1-207ENST00000468925 KRTAP21-1Q3LI58 79 aa1□□□□□ -2.25
SF3B1-207ENST00000468925 PHGR1C9JFL3 82 aa0.81□□□□□ -2.28
SF3B1-207ENST00000468925 MUC16Q8WXI7 14507 aa0.68□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 8.9 ms