RNA–Protein interactions for RNA: ENST00000468925.1

SF3B1-207, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 510 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-207ENST00000468925 AEBP2Q6ZN18 517 aaPredicted RBP19.57■□□□□ 0.72
SF3B1-207ENST00000468925 CHIC1Q5VXU3 224 aa18.16■□□□□ 0.5
SF3B1-207ENST00000468925 SENP3Q9H4L4 574 aaPredicted RBP16.73■□□□□ 0.27
SF3B1-207ENST00000468925 PHF23Q9BUL5 403 aaPredicted RBP16.42■□□□□ 0.22
SF3B1-207ENST00000468925 POTEDQ86YR6 584 aa16.13■□□□□ 0.17
SF3B1-207ENST00000468925 FOXD1Q16676 465 aa15.75■□□□□ 0.11
SF3B1-207ENST00000468925 MSH5O43196 834 aa15.01□□□□□ -0.01
SF3B1-207ENST00000468925 PIAS4Q8N2W9 510 aaPredicted RBP14.46□□□□□ -0.09
SF3B1-207ENST00000468925 PPP6R1Q9UPN7 881 aa14.1□□□□□ -0.15
SF3B1-207ENST00000468925 ADRA2BP18089 450 aa13.96□□□□□ -0.17
SF3B1-207ENST00000468925 PLPPR3Q6T4P5 718 aa13.73□□□□□ -0.21
SF3B1-207ENST00000468925 CACNB1Q02641 598 aaPredicted RBP13.36□□□□□ -0.27
SF3B1-207ENST00000468925 DMRT2Q9Y5R5 561 aa13.18□□□□□ -0.3
SF3B1-207ENST00000468925 MAPK8IP2Q13387 824 aaPredicted RBP13.09□□□□□ -0.31
SF3B1-207ENST00000468925 RNF39Q9H2S5 420 aa12.77□□□□□ -0.37
SF3B1-207ENST00000468925 SCAF1Q9H7N4 1312 aaKnown RBP12.68□□□□□ -0.38
SF3B1-207ENST00000468925 DCAF8L1A6NGE4 600 aa12.56□□□□□ -0.4
SF3B1-207ENST00000468925 C1QBPQ07021 282 aaKnown RBP12.5□□□□□ -0.41
SF3B1-207ENST00000468925 POTEHQ6S545 545 aa12.46□□□□□ -0.41
SF3B1-207ENST00000468925 HOXD11P31277 338 aaPredicted RBP12.38□□□□□ -0.43
SF3B1-207ENST00000468925 DNAJC5BQ9UF47 199 aa12.11□□□□□ -0.47
SF3B1-207ENST00000468925 RNF216Q9NWF9 866 aaPredicted RBP12.03□□□□□ -0.48
SF3B1-207ENST00000468925 PPP4R3CPQ6ZMV5 832 aa12.02□□□□□ -0.49
SF3B1-207ENST00000468925 CNKSR2Q8WXI2 1034 aa11.9□□□□□ -0.5
SF3B1-207ENST00000468925 DSG3P32926 999 aa11.68□□□□□ -0.54
SF3B1-207ENST00000468925 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.68□□□□□ -0.547e-10■□□□□ 9.5
SF3B1-207ENST00000468925 NCBP3Q53F19 620 aaKnown RBP11.52□□□□□ -0.57
SF3B1-207ENST00000468925 SPINK5Q9NQ38 1064 aaPredicted RBP11.52□□□□□ -0.57
SF3B1-207ENST00000468925 CAPN15O75808 1086 aa11.46□□□□□ -0.57
SF3B1-207ENST00000468925 U3KPZ7 1027 aaPredicted RBP11.44□□□□□ -0.58
SF3B1-207ENST00000468925 NPM3O75607 178 aaKnown RBP11.42□□□□□ -0.58
SF3B1-207ENST00000468925 KCNA4P22459 653 aa11.32□□□□□ -0.6
SF3B1-207ENST00000468925 SP7Q8TDD2 431 aaPredicted RBP11.28□□□□□ -0.6
SF3B1-207ENST00000468925 CHRDL2Q6WN34 429 aa11.22□□□□□ -0.61
SF3B1-207ENST00000468925 ABCB7O75027 752 aa11.15□□□□□ -0.62
SF3B1-207ENST00000468925 RBM42Q9BTD8 480 aaKnown RBP11.09□□□□□ -0.63
SF3B1-207ENST00000468925 TRHP20396 242 aaPredicted RBP11.08□□□□□ -0.64
SF3B1-207ENST00000468925 ZNF219Q9P2Y4 722 aaPredicted RBP11.04□□□□□ -0.64
SF3B1-207ENST00000468925 APLP2Q06481 763 aa10.9□□□□□ -0.66
SF3B1-207ENST00000468925 SLC4A2P04920 1241 aa10.87□□□□□ -0.67
SF3B1-207ENST00000468925 PIP4P2Q8N4L2 257 aa10.79□□□□□ -0.68
SF3B1-207ENST00000468925 HAX1O00165 279 aa10.75□□□□□ -0.69
SF3B1-207ENST00000468925 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.72□□□□□ -0.69
SF3B1-207ENST00000468925 HNRNPUL2Q1KMD3 747 aaKnown RBP10.72□□□□□ -0.69
SF3B1-207ENST00000468925 SLC4A1APQ9BWU0 796 aaKnown RBP10.69□□□□□ -0.7
SF3B1-207ENST00000468925 AKT1S1Q96B36 256 aa10.68□□□□□ -0.7
SF3B1-207ENST00000468925 EVX2Q03828 476 aa10.67□□□□□ -0.7
SF3B1-207ENST00000468925 SAMD1Q6SPF0 538 aaPredicted RBP10.64□□□□□ -0.71
SF3B1-207ENST00000468925 POLA2Q14181 598 aa10.62□□□□□ -0.71
SF3B1-207ENST00000468925 FXR2P51116 673 aaKnown RBP eCLIP10.61□□□□□ -0.715e-10■■■■□ 21.6
SF3B1-207ENST00000468925 REM2Q8IYK8 340 aaPredicted RBP10.6□□□□□ -0.71
SF3B1-207ENST00000468925 LHX8Q68G74 356 aa10.54□□□□□ -0.72
SF3B1-207ENST00000468925 MYCNP04198 464 aaPredicted RBP10.52□□□□□ -0.73
SF3B1-207ENST00000468925 PLSCR2Q9NRY7 297 aa10.52□□□□□ -0.73
SF3B1-207ENST00000468925 PITPNM1O00562 1244 aa10.51□□□□□ -0.73
SF3B1-207ENST00000468925 FOXD4L1Q9NU39 408 aa10.47□□□□□ -0.73
SF3B1-207ENST00000468925 ZBTB22O15209 634 aa10.41□□□□□ -0.74
SF3B1-207ENST00000468925 ATF5Q9Y2D1 282 aaPredicted RBP10.37□□□□□ -0.75
SF3B1-207ENST00000468925 OSCARQ8IYS5 282 aa10.34□□□□□ -0.75
SF3B1-207ENST00000468925 GABBR2O75899 941 aa10.33□□□□□ -0.76
SF3B1-207ENST00000468925 C19orf67A6NJJ6 358 aa10.29□□□□□ -0.76
SF3B1-207ENST00000468925 ZBTB12Q9Y330 459 aaPredicted RBP10.29□□□□□ -0.76
SF3B1-207ENST00000468925 PRKAR2AP13861 404 aaKnown RBP10.2□□□□□ -0.78
SF3B1-207ENST00000468925 POTEIP0CG38 1075 aa10.17□□□□□ -0.78
SF3B1-207ENST00000468925 ATXN8OSP0DMR3 200 aa10.04□□□□□ -0.8
SF3B1-207ENST00000468925 EHMT2Q96KQ7 1210 aa10.03□□□□□ -0.8
SF3B1-207ENST00000468925 POTEMA6NI47 508 aa9.98□□□□□ -0.81
SF3B1-207ENST00000468925 CSRNP3Q8WYN3 585 aa9.98□□□□□ -0.81
SF3B1-207ENST00000468925 CLEC11AQ9Y240 323 aa9.97□□□□□ -0.81
SF3B1-207ENST00000468925 SPDYE1Q8NFV5 336 aaPredicted RBP9.95□□□□□ -0.82
SF3B1-207ENST00000468925 SPDYE2BA6NHP3 402 aa9.94□□□□□ -0.82
SF3B1-207ENST00000468925 SPDYE6P0CI01 402 aa9.94□□□□□ -0.82
SF3B1-207ENST00000468925 SPDYE2Q495Y8 402 aa9.94□□□□□ -0.82
SF3B1-207ENST00000468925 CHADLQ6NUI6 762 aa9.92□□□□□ -0.82
SF3B1-207ENST00000468925 OTUD5Q96G74 571 aa9.92□□□□□ -0.82
SF3B1-207ENST00000468925 POTEGQ6S5H5 508 aa9.91□□□□□ -0.82
SF3B1-207ENST00000468925 FBLN2P98095 1184 aa9.89□□□□□ -0.83
SF3B1-207ENST00000468925 MKRN4PQ13434 485 aaPredicted RBP9.85□□□□□ -0.83
SF3B1-207ENST00000468925 CLCN6P51797 869 aa9.83□□□□□ -0.84
SF3B1-207ENST00000468925 PCDH10Q9P2E7 1040 aa9.83□□□□□ -0.84
SF3B1-207ENST00000468925 POTEB2H3BUK9 544 aa9.82□□□□□ -0.84
SF3B1-207ENST00000468925 CD44P16070 742 aaKnown RBP9.82□□□□□ -0.84
SF3B1-207ENST00000468925 DCBLD2Q96PD2 775 aa9.81□□□□□ -0.84
SF3B1-207ENST00000468925 SSUH2Q9Y2M2 353 aa9.77□□□□□ -0.85
SF3B1-207ENST00000468925 ZNF692Q9BU19 519 aaPredicted RBP9.72□□□□□ -0.85
SF3B1-207ENST00000468925 PRR29P0C7W0 189 aa9.68□□□□□ -0.86
SF3B1-207ENST00000468925 FARP1Q9Y4F1 1045 aaPredicted RBP9.68□□□□□ -0.86
SF3B1-207ENST00000468925 LCE2DQ5TA82 110 aaPredicted RBP9.67□□□□□ -0.86
SF3B1-207ENST00000468925 ZNF579Q8NAF0 562 aaKnown RBP9.66□□□□□ -0.86
SF3B1-207ENST00000468925 GALR2O43603 387 aaPredicted RBP9.62□□□□□ -0.87
SF3B1-207ENST00000468925 PABPN1Q86U42 306 aaKnown RBP eCLIP9.6□□□□□ -0.87
SF3B1-207ENST00000468925 POTEJP0CG39 1038 aa9.54□□□□□ -0.88
SF3B1-207ENST00000468925 ZRANB1Q9UGI0 708 aa9.53□□□□□ -0.88
SF3B1-207ENST00000468925 PELP1Q8IZL8 1130 aaKnown RBP9.52□□□□□ -0.89
SF3B1-207ENST00000468925 FAM163AQ96GL9 167 aaPredicted RBP9.44□□□□□ -0.9
SF3B1-207ENST00000468925 SPDYE4A6NLX3 237 aa9.43□□□□□ -0.9
SF3B1-207ENST00000468925 METRNQ9UJH8 293 aa9.41□□□□□ -0.9
SF3B1-207ENST00000468925 MAMSTRQ6ZN01 415 aa9.39□□□□□ -0.91
SF3B1-207ENST00000468925 CDAN1Q8IWY9 1227 aa9.37□□□□□ -0.91
SF3B1-207ENST00000468925 ASTLQ6HA08 431 aaPredicted RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms