RNA–Protein interactions for RNA: ENST00000468807.1

TTC28-204, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 2

Gene TTC28, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-204ENST00000468807 PRR15LQ9BU68 103 aa7.63□□□□□ -1.19
TTC28-204ENST00000468807 LCE4AQ5TA78 99 aa7.62□□□□□ -1.19
TTC28-204ENST00000468807 KRTAP4-3Q9BYR4 195 aa7.6□□□□□ -1.19
TTC28-204ENST00000468807 CCDC179H3BU77 68 aa7.58□□□□□ -1.2
TTC28-204ENST00000468807 ATP5EP56381 51 aaPredicted RBP7.52□□□□□ -1.21
TTC28-204ENST00000468807 LINC01558Q9Y6Z2 57 aa7.46□□□□□ -1.22
TTC28-204ENST00000468807 AHNAK2Q8IVF2 5795 aa7.45□□□□□ -1.22
TTC28-204ENST00000468807 KRTAP5-4Q6L8H1 288 aa7.42□□□□□ -1.22
TTC28-204ENST00000468807 KRTAP12-3P60328 96 aa7.41□□□□□ -1.22
TTC28-204ENST00000468807 KRTAP4-7Q9BYR0 210 aa7.38□□□□□ -1.23
TTC28-204ENST00000468807 UQCR11O14957 56 aa7.35□□□□□ -1.23
TTC28-204ENST00000468807 TMEM258P61165 79 aa7.25□□□□□ -1.25
TTC28-204ENST00000468807 MIR22HGQ0VDD5 57 aa7.18□□□□□ -1.26
TTC28-204ENST00000468807 KRTAP5-10Q6L8G5 202 aa7.18□□□□□ -1.26
TTC28-204ENST00000468807 KRTAP25-1Q3LHN0 102 aa7.17□□□□□ -1.26
TTC28-204ENST00000468807 K7ERS5 55 aa7.11□□□□□ -1.27
TTC28-204ENST00000468807 KRTAP5-5Q701N2 237 aaPredicted RBP7.08□□□□□ -1.28
TTC28-204ENST00000468807 KRTAP20-2Q3LI61 65 aa7.06□□□□□ -1.28
TTC28-204ENST00000468807 KRTAP5-3Q6L8H2 238 aa7.01□□□□□ -1.29
TTC28-204ENST00000468807 KRTAP12-4P60329 112 aa6.99□□□□□ -1.29
TTC28-204ENST00000468807 PSPHP1O15172 72 aa6.98□□□□□ -1.29
TTC28-204ENST00000468807 SPRR5A0A1B0GTR4 108 aa6.97□□□□□ -1.29
TTC28-204ENST00000468807 KRTAP5-7Q6L8G8 165 aa6.92□□□□□ -1.3
TTC28-204ENST00000468807 V9GYY9 64 aa6.91□□□□□ -1.3
TTC28-204ENST00000468807 SYNE1Q8NF91 8797 aaKnown RBP6.91□□□□□ -1.3
TTC28-204ENST00000468807 KRTAP19-4Q3LI73 84 aa6.88□□□□□ -1.31
TTC28-204ENST00000468807 KRTAP15-1Q3LI76 137 aa6.86□□□□□ -1.31
TTC28-204ENST00000468807 KRTAP23-1A1A580 65 aa6.84□□□□□ -1.31
TTC28-204ENST00000468807 Q1T7F1 81 aa6.83□□□□□ -1.32
TTC28-204ENST00000468807 LCE3CQ5T5A8 94 aa6.8□□□□□ -1.32
TTC28-204ENST00000468807 A6NED7 52 aa6.73□□□□□ -1.33
TTC28-204ENST00000468807 CDC42SE1Q9NRR8 79 aa6.69□□□□□ -1.34
TTC28-204ENST00000468807 KRTAP4-12Q9BQ66 201 aa6.68□□□□□ -1.34
TTC28-204ENST00000468807 KRTAP9-9Q9BYP9 154 aa6.63□□□□□ -1.35
TTC28-204ENST00000468807 KRTAP9-4Q9BYQ2 154 aa6.63□□□□□ -1.35
TTC28-204ENST00000468807 MT1AP04731 61 aa6.57□□□□□ -1.36
TTC28-204ENST00000468807 ROMO1P60602 79 aa6.56□□□□□ -1.36
TTC28-204ENST00000468807 KRTAP6-1Q3LI64 71 aa6.56□□□□□ -1.36
TTC28-204ENST00000468807 RPS28P62857 69 aaKnown RBP6.55□□□□□ -1.36
TTC28-204ENST00000468807 KRTAP4-11Q9BYQ6 195 aa6.48□□□□□ -1.37
TTC28-204ENST00000468807 KRTAP5-2Q701N4 177 aa6.47□□□□□ -1.37
TTC28-204ENST00000468807 KRTAP9-6A8MVA2 160 aa6.4□□□□□ -1.38
TTC28-204ENST00000468807 KRTAP6-2Q3LI66 62 aa6.31□□□□□ -1.4
TTC28-204ENST00000468807 OBSCNQ5VST9 7968 aa6.29□□□□□ -1.4
TTC28-204ENST00000468807 KRTAP5-8O75690 187 aa6.25□□□□□ -1.41
TTC28-204ENST00000468807 AHNAKQ09666 5890 aaKnown RBP6.18□□□□□ -1.42
TTC28-204ENST00000468807 MUC5BQ9HC84 5762 aaPredicted RBP6.17□□□□□ -1.42
TTC28-204ENST00000468807 KRTAP4-2Q9BYR5 136 aa6.12□□□□□ -1.43
TTC28-204ENST00000468807 MUC5ACP98088 5654 aa6.1□□□□□ -1.43
TTC28-204ENST00000468807 MT3P25713 68 aa6.03□□□□□ -1.44
TTC28-204ENST00000468807 PCP4P48539 62 aa6.02□□□□□ -1.45
TTC28-204ENST00000468807 KRTAP5-1Q6L8H4 278 aa5.84□□□□□ -1.47
TTC28-204ENST00000468807 BRK1Q8WUW1 75 aa5.56□□□□□ -1.52
TTC28-204ENST00000468807 LCE1EQ5T753 118 aa5.53□□□□□ -1.52
TTC28-204ENST00000468807 LCE1BQ5T7P3 118 aa5.32□□□□□ -1.56
TTC28-204ENST00000468807 PMAIP1Q13794 54 aa5.19□□□□□ -1.58
TTC28-204ENST00000468807 LCE1CQ5T751 118 aa5.14□□□□□ -1.59
TTC28-204ENST00000468807 PRAC1Q96KF2 57 aa5.09□□□□□ -1.59
TTC28-204ENST00000468807 LCE3DQ9BYE3 92 aa4.88□□□□□ -1.63
TTC28-204ENST00000468807 PRO0628Q9UI54 55 aa4.68□□□□□ -1.66
TTC28-204ENST00000468807 KRTAP5-11Q6L8G4 156 aa4.66□□□□□ -1.66
TTC28-204ENST00000468807 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.63□□□□□ -1.67
TTC28-204ENST00000468807 LCE3EQ5T5B0 92 aa4.56□□□□□ -1.68
TTC28-204ENST00000468807 LCE1FQ5T754 118 aa4.56□□□□□ -1.68
TTC28-204ENST00000468807 KTN1-AS1Q86SY8 53 aa4.44□□□□□ -1.7
TTC28-204ENST00000468807 SVIPQ8NHG7 77 aa4.4□□□□□ -1.71
TTC28-204ENST00000468807 H3BS24 57 aa4.39□□□□□ -1.71
TTC28-204ENST00000468807 LUZP6Q538Z0 58 aa4.35□□□□□ -1.71
TTC28-204ENST00000468807 KRTAP21-2Q3LI59 83 aa4.29□□□□□ -1.72
TTC28-204ENST00000468807 PHGR1C9JFL3 82 aa4.24□□□□□ -1.73
TTC28-204ENST00000468807 KRTAP4-4Q9BYR3 166 aa4.03□□□□□ -1.76
TTC28-204ENST00000468807 MUC19Q7Z5P9 8384 aa3.85□□□□□ -1.79
TTC28-204ENST00000468807 PRM1P04553 51 aa3.36□□□□□ -1.87
TTC28-204ENST00000468807 NDUFAF8A1L188 74 aa3.34□□□□□ -1.87
TTC28-204ENST00000468807 KRTAP21-1Q3LI58 79 aa3.19□□□□□ -1.9
TTC28-204ENST00000468807 A0A0A0MQY5 61 aa2.71□□□□□ -1.98
TTC28-204ENST00000468807 INE1O15225 51 aa2.68□□□□□ -1.98
TTC28-204ENST00000468807 MUC16Q8WXI7 14507 aa2.66□□□□□ -1.98
Retrieved 78 of 20,778 RNA–protein pairs in 31.8 ms