RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 COX7CP15954 63 aa7.27□□□□□ -1.25
COL9A3-207ENST00000467819 TNP1P09430 55 aa7.26□□□□□ -1.25
COL9A3-207ENST00000467819 H7BZZ5 65 aa7.25□□□□□ -1.25
COL9A3-207ENST00000467819 KRTAP5-10Q6L8G5 202 aa7.21□□□□□ -1.26
COL9A3-207ENST00000467819 KRTAP4-7Q9BYR0 210 aa7.12□□□□□ -1.27
COL9A3-207ENST00000467819 KRTAP12-3P60328 96 aa7.04□□□□□ -1.28
COL9A3-207ENST00000467819 ANAPC13Q9BS18 74 aa7.04□□□□□ -1.28
COL9A3-207ENST00000467819 KRTAP5-3Q6L8H2 238 aa6.99□□□□□ -1.29
COL9A3-207ENST00000467819 KRTAP4-12Q9BQ66 201 aa6.98□□□□□ -1.29
COL9A3-207ENST00000467819 KRTAP5-7Q6L8G8 165 aa6.96□□□□□ -1.3
COL9A3-207ENST00000467819 KRTAP20-2Q3LI61 65 aa6.95□□□□□ -1.3
COL9A3-207ENST00000467819 PRR15LQ9BU68 103 aa6.94□□□□□ -1.3
COL9A3-207ENST00000467819 KRTAP5-5Q701N2 237 aaPredicted RBP6.9□□□□□ -1.3
COL9A3-207ENST00000467819 SPRR5A0A1B0GTR4 108 aa6.85□□□□□ -1.31
COL9A3-207ENST00000467819 ATP5EP56381 51 aaPredicted RBP6.84□□□□□ -1.31
COL9A3-207ENST00000467819 KRTAP12-4P60329 112 aa6.81□□□□□ -1.32
COL9A3-207ENST00000467819 CCDC179H3BU77 68 aa6.8□□□□□ -1.32
COL9A3-207ENST00000467819 LINC01558Q9Y6Z2 57 aa6.8□□□□□ -1.32
COL9A3-207ENST00000467819 KRTAP9-9Q9BYP9 154 aa6.78□□□□□ -1.32
COL9A3-207ENST00000467819 KRTAP9-4Q9BYQ2 154 aa6.78□□□□□ -1.32
COL9A3-207ENST00000467819 UQCR11O14957 56 aa6.7□□□□□ -1.34
COL9A3-207ENST00000467819 TMEM258P61165 79 aa6.7□□□□□ -1.34
COL9A3-207ENST00000467819 SYNE1Q8NF91 8797 aaKnown RBP6.7□□□□□ -1.34
COL9A3-207ENST00000467819 KRTAP25-1Q3LHN0 102 aa6.68□□□□□ -1.34
COL9A3-207ENST00000467819 KRTAP19-4Q3LI73 84 aa6.54□□□□□ -1.36
COL9A3-207ENST00000467819 MIR22HGQ0VDD5 57 aa6.53□□□□□ -1.36
COL9A3-207ENST00000467819 K7ERS5 55 aa6.47□□□□□ -1.37
COL9A3-207ENST00000467819 KRTAP15-1Q3LI76 137 aa6.47□□□□□ -1.37
COL9A3-207ENST00000467819 LCE3CQ5T5A8 94 aa6.45□□□□□ -1.38
COL9A3-207ENST00000467819 KRTAP4-11Q9BYQ6 195 aa6.4□□□□□ -1.38
COL9A3-207ENST00000467819 KRTAP23-1A1A580 65 aa6.37□□□□□ -1.39
COL9A3-207ENST00000467819 KRTAP6-1Q3LI64 71 aa6.35□□□□□ -1.39
COL9A3-207ENST00000467819 KRTAP5-2Q701N4 177 aa6.35□□□□□ -1.39
COL9A3-207ENST00000467819 V9GYY9 64 aa6.35□□□□□ -1.39
COL9A3-207ENST00000467819 MT1AP04731 61 aa6.34□□□□□ -1.39
COL9A3-207ENST00000467819 PCP4P48539 62 aa6.28□□□□□ -1.4
COL9A3-207ENST00000467819 PSPHP1O15172 72 aa6.25□□□□□ -1.41
COL9A3-207ENST00000467819 Q1T7F1 81 aa6.23□□□□□ -1.41
COL9A3-207ENST00000467819 KRTAP5-8O75690 187 aa6.19□□□□□ -1.42
COL9A3-207ENST00000467819 KRTAP4-2Q9BYR5 136 aa6.19□□□□□ -1.42
COL9A3-207ENST00000467819 RPS28P62857 69 aaKnown RBP6.17□□□□□ -1.42
COL9A3-207ENST00000467819 KRTAP6-2Q3LI66 62 aa6.12□□□□□ -1.43
COL9A3-207ENST00000467819 OBSCNQ5VST9 7968 aa6.12□□□□□ -1.43
COL9A3-207ENST00000467819 KRTAP9-6A8MVA2 160 aa6.11□□□□□ -1.43
COL9A3-207ENST00000467819 MUC5ACP98088 5654 aa6.1□□□□□ -1.43
COL9A3-207ENST00000467819 AHNAKQ09666 5890 aaKnown RBP6.1□□□□□ -1.43
COL9A3-207ENST00000467819 MUC5BQ9HC84 5762 aaPredicted RBP6.08□□□□□ -1.44
COL9A3-207ENST00000467819 CDC42SE1Q9NRR8 79 aa6.08□□□□□ -1.44
COL9A3-207ENST00000467819 A6NED7 52 aa6.01□□□□□ -1.45
COL9A3-207ENST00000467819 ROMO1P60602 79 aa5.96□□□□□ -1.46
COL9A3-207ENST00000467819 MT3P25713 68 aa5.81□□□□□ -1.48
COL9A3-207ENST00000467819 H3BS24 57 aa5.79□□□□□ -1.48
COL9A3-207ENST00000467819 KRTAP5-1Q6L8H4 278 aa5.76□□□□□ -1.49
COL9A3-207ENST00000467819 BRK1Q8WUW1 75 aa5.4□□□□□ -1.54
COL9A3-207ENST00000467819 LCE1EQ5T753 118 aa5.38□□□□□ -1.55
COL9A3-207ENST00000467819 LCE1BQ5T7P3 118 aa5.16□□□□□ -1.58
COL9A3-207ENST00000467819 PMAIP1Q13794 54 aa5.11□□□□□ -1.59
COL9A3-207ENST00000467819 LCE1CQ5T751 118 aa5□□□□□ -1.61
COL9A3-207ENST00000467819 PRO0628Q9UI54 55 aa4.97□□□□□ -1.61
COL9A3-207ENST00000467819 PRAC1Q96KF2 57 aa4.82□□□□□ -1.64
COL9A3-207ENST00000467819 KTN1-AS1Q86SY8 53 aa4.7□□□□□ -1.66
COL9A3-207ENST00000467819 LCE3DQ9BYE3 92 aa4.59□□□□□ -1.67
COL9A3-207ENST00000467819 KRTAP5-11Q6L8G4 156 aa4.57□□□□□ -1.68
COL9A3-207ENST00000467819 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.51□□□□□ -1.69
COL9A3-207ENST00000467819 LCE1FQ5T754 118 aa4.49□□□□□ -1.69
COL9A3-207ENST00000467819 SVIPQ8NHG7 77 aa4.44□□□□□ -1.7
COL9A3-207ENST00000467819 LCE3EQ5T5B0 92 aa4.26□□□□□ -1.73
COL9A3-207ENST00000467819 PHGR1C9JFL3 82 aa4.24□□□□□ -1.73
COL9A3-207ENST00000467819 KRTAP21-2Q3LI59 83 aa4.16□□□□□ -1.74
COL9A3-207ENST00000467819 LUZP6Q538Z0 58 aa4.16□□□□□ -1.74
COL9A3-207ENST00000467819 KRTAP4-4Q9BYR3 166 aa3.91□□□□□ -1.78
COL9A3-207ENST00000467819 MUC19Q7Z5P9 8384 aa3.78□□□□□ -1.8
COL9A3-207ENST00000467819 NDUFAF8A1L188 74 aa3.52□□□□□ -1.85
COL9A3-207ENST00000467819 KRTAP21-1Q3LI58 79 aa3.2□□□□□ -1.9
COL9A3-207ENST00000467819 A0A0A0MQY5 61 aa3.12□□□□□ -1.91
COL9A3-207ENST00000467819 PRM1P04553 51 aa3.05□□□□□ -1.92
COL9A3-207ENST00000467819 INE1O15225 51 aa2.94□□□□□ -1.94
COL9A3-207ENST00000467819 MUC16Q8WXI7 14507 aa2.66□□□□□ -1.98
Retrieved 78 of 20,778 RNA–protein pairs in 7.2 ms