RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 MUC12Q9UKN1 5478 aa6.38□□□□□ -1.39
COL9A3-205ENST00000466192 KRTAP9-6A0A140TA67 174 aa6.37□□□□□ -1.39
COL9A3-205ENST00000466192 KRTAP4-7Q9BYR0 210 aa6.37□□□□□ -1.39
COL9A3-205ENST00000466192 KRTAP19-4Q3LI73 84 aa6.34□□□□□ -1.4
COL9A3-205ENST00000466192 KRTAP9-6A8MVA2 160 aa6.27□□□□□ -1.41
COL9A3-205ENST00000466192 SPRR2FQ96RM1 72 aa6.26□□□□□ -1.41
COL9A3-205ENST00000466192 SYNE2Q8WXH0 6885 aaKnown RBP6.23□□□□□ -1.41
COL9A3-205ENST00000466192 KRTAP19-3Q7Z4W3 81 aa6.23□□□□□ -1.41
COL9A3-205ENST00000466192 MT1GP13640 62 aa6.18□□□□□ -1.42
COL9A3-205ENST00000466192 MT1MQ8N339 61 aa6.16□□□□□ -1.42
COL9A3-205ENST00000466192 KRTAP4-3Q9BYR4 195 aa6.13□□□□□ -1.43
COL9A3-205ENST00000466192 LCE5AQ5TCM9 118 aa6.1□□□□□ -1.43
COL9A3-205ENST00000466192 KRTAP5-9P26371 169 aa6.08□□□□□ -1.44
COL9A3-205ENST00000466192 MDN1Q9NU22 5596 aa6.03□□□□□ -1.44
COL9A3-205ENST00000466192 LOC100996750A0A140TA64 210 aa5.97□□□□□ -1.45
COL9A3-205ENST00000466192 DSTQ03001 7570 aaKnown RBP5.96□□□□□ -1.45
COL9A3-205ENST00000466192 LCE1AQ5T7P2 110 aa5.95□□□□□ -1.46
COL9A3-205ENST00000466192 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.93□□□□□ -1.46
COL9A3-205ENST00000466192 KRTAP2-3P0C7H8 128 aa5.88□□□□□ -1.47
COL9A3-205ENST00000466192 KRTAP2-4Q9BYR9 128 aa5.88□□□□□ -1.47
COL9A3-205ENST00000466192 KRTAP2-1Q9BYU5 128 aa5.88□□□□□ -1.47
COL9A3-205ENST00000466192 SPRR2EP22531 72 aa5.86□□□□□ -1.47
COL9A3-205ENST00000466192 SPRR2BP35325 72 aa5.86□□□□□ -1.47
COL9A3-205ENST00000466192 SPRR2AP35326 72 aa5.86□□□□□ -1.47
COL9A3-205ENST00000466192 KRTAP6-3Q3LI67 103 aa5.84□□□□□ -1.47
COL9A3-205ENST00000466192 KRTAP9-7A8MTY7 169 aa5.65□□□□□ -1.51
COL9A3-205ENST00000466192 SPRR2DP22532 72 aa5.63□□□□□ -1.51
COL9A3-205ENST00000466192 KRTAP5-5Q701N2 237 aaPredicted RBP5.52□□□□□ -1.53
COL9A3-205ENST00000466192 NEBP20929 6669 aa5.49□□□□□ -1.53
COL9A3-205ENST00000466192 KRTAP6-1Q3LI64 71 aa5.46□□□□□ -1.53
COL9A3-205ENST00000466192 MT1AP04731 61 aa5.45□□□□□ -1.54
COL9A3-205ENST00000466192 LCE3BQ5TA77 95 aa5.4□□□□□ -1.55
COL9A3-205ENST00000466192 SYNE1Q8NF91 8797 aaKnown RBP5.32□□□□□ -1.56
COL9A3-205ENST00000466192 KRTAP12-4P60329 112 aa5.21□□□□□ -1.58
COL9A3-205ENST00000466192 KRTAP4-9Q9BYQ8 210 aa5.21□□□□□ -1.58
COL9A3-205ENST00000466192 KRTAP9-4Q9BYQ2 154 aa5.17□□□□□ -1.58
COL9A3-205ENST00000466192 KRTAP5-4Q6L8H1 288 aa5.14□□□□□ -1.59
COL9A3-205ENST00000466192 KRTAP6-2Q3LI66 62 aa4.99□□□□□ -1.61
COL9A3-205ENST00000466192 LCE3DQ9BYE3 92 aa4.98□□□□□ -1.61
COL9A3-205ENST00000466192 KRTAP2-2Q9BYT5 123 aa4.96□□□□□ -1.62
COL9A3-205ENST00000466192 LCE4AQ5TA78 99 aa4.95□□□□□ -1.62
COL9A3-205ENST00000466192 KRTAP4-6Q9BYQ5 205 aa4.94□□□□□ -1.62
COL9A3-205ENST00000466192 MT4P47944 62 aa4.92□□□□□ -1.62
COL9A3-205ENST00000466192 MT3P25713 68 aa4.91□□□□□ -1.62
COL9A3-205ENST00000466192 KRTAP20-1Q3LI63 56 aa4.9□□□□□ -1.62
COL9A3-205ENST00000466192 LCE3EQ5T5B0 92 aa4.87□□□□□ -1.63
COL9A3-205ENST00000466192 OBSCNQ5VST9 7968 aa4.84□□□□□ -1.63
COL9A3-205ENST00000466192 KRTAP20-2Q3LI61 65 aa4.81□□□□□ -1.64
COL9A3-205ENST00000466192 HMCN1Q96RW7 5635 aa4.81□□□□□ -1.64
COL9A3-205ENST00000466192 LCE1DQ5T752 114 aa4.78□□□□□ -1.64
COL9A3-205ENST00000466192 KRTAP5-2Q701N4 177 aa4.71□□□□□ -1.66
COL9A3-205ENST00000466192 PRM1P04553 51 aa4.65□□□□□ -1.66
COL9A3-205ENST00000466192 KRTAP5-3Q6L8H2 238 aa4.63□□□□□ -1.67
COL9A3-205ENST00000466192 GPR98Q8WXG9 6306 aa4.51□□□□□ -1.69
COL9A3-205ENST00000466192 LCE1EQ5T753 118 aa4.19□□□□□ -1.74
COL9A3-205ENST00000466192 AHNAK2Q8IVF2 5795 aa4.13□□□□□ -1.75
COL9A3-205ENST00000466192 KRTAP4-11Q9BYQ6 195 aa4.11□□□□□ -1.75
COL9A3-205ENST00000466192 MUC5ACP98088 5654 aa4.09□□□□□ -1.75
COL9A3-205ENST00000466192 KRTAP5-1Q6L8H4 278 aa4.06□□□□□ -1.76
COL9A3-205ENST00000466192 LCE1BQ5T7P3 118 aa4.01□□□□□ -1.77
COL9A3-205ENST00000466192 KRTAP5-10Q6L8G5 202 aa3.99□□□□□ -1.77
COL9A3-205ENST00000466192 KRTAP5-8O75690 187 aa3.96□□□□□ -1.78
COL9A3-205ENST00000466192 KRTAP4-2Q9BYR5 136 aa3.96□□□□□ -1.78
COL9A3-205ENST00000466192 LCE1CQ5T751 118 aa3.93□□□□□ -1.78
COL9A3-205ENST00000466192 KRTAP5-7Q6L8G8 165 aa3.84□□□□□ -1.79
COL9A3-205ENST00000466192 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.69□□□□□ -1.82
COL9A3-205ENST00000466192 KRTAP21-2Q3LI59 83 aa3.56□□□□□ -1.84
COL9A3-205ENST00000466192 MUC5BQ9HC84 5762 aaPredicted RBP3.48□□□□□ -1.85
COL9A3-205ENST00000466192 KRTAP9-9Q9BYP9 154 aa3.47□□□□□ -1.85
COL9A3-205ENST00000466192 KRTAP5-11Q6L8G4 156 aa3.44□□□□□ -1.86
COL9A3-205ENST00000466192 AHNAKQ09666 5890 aaKnown RBP3.42□□□□□ -1.86
COL9A3-205ENST00000466192 KRTAP4-12Q9BQ66 201 aa3.27□□□□□ -1.89
COL9A3-205ENST00000466192 KRTAP4-4Q9BYR3 166 aa3.22□□□□□ -1.89
COL9A3-205ENST00000466192 KRTAP21-1Q3LI58 79 aa3.01□□□□□ -1.93
COL9A3-205ENST00000466192 LCE1FQ5T754 118 aa3□□□□□ -1.93
COL9A3-205ENST00000466192 PHGR1C9JFL3 82 aa2.97□□□□□ -1.93
COL9A3-205ENST00000466192 MUC19Q7Z5P9 8384 aa2.91□□□□□ -1.94
COL9A3-205ENST00000466192 MUC16Q8WXI7 14507 aa1.95□□□□□ -2.1
Retrieved 78 of 20,778 RNA–protein pairs in 8.6 ms