RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.84□□□□□ -1.31
SDF4-205ENST00000465727 KRTAP9-7A8MTY7 169 aa6.83□□□□□ -1.32
SDF4-205ENST00000465727 KRTAP19-7Q3SYF9 63 aa6.83□□□□□ -1.32
SDF4-205ENST00000465727 KRTAP19-6Q3LI70 58 aa6.8□□□□□ -1.32
SDF4-205ENST00000465727 KMT2DO14686 5537 aa6.77□□□□□ -1.33
SDF4-205ENST00000465727 KRTAP4-7Q9BYR0 210 aa6.72□□□□□ -1.33
SDF4-205ENST00000465727 MT1LQ93083 61 aa6.69□□□□□ -1.34
SDF4-205ENST00000465727 MACF1Q9UPN3 7388 aaKnown RBP6.65□□□□□ -1.34
SDF4-205ENST00000465727 MT1EP04732 61 aa6.62□□□□□ -1.35
SDF4-205ENST00000465727 SYNE2Q8WXH0 6885 aaKnown RBP6.57□□□□□ -1.36
SDF4-205ENST00000465727 KRTAP6-3Q3LI67 103 aa6.4□□□□□ -1.39
SDF4-205ENST00000465727 LOC100996750A0A140TA64 210 aa6.26□□□□□ -1.41
SDF4-205ENST00000465727 KRTAP12-4P60329 112 aa6.25□□□□□ -1.41
SDF4-205ENST00000465727 MT1GP13640 62 aa6.21□□□□□ -1.41
SDF4-205ENST00000465727 KRTAP4-3Q9BYR4 195 aa6.18□□□□□ -1.42
SDF4-205ENST00000465727 NEBP20929 6669 aa6.16□□□□□ -1.42
SDF4-205ENST00000465727 MT1MQ8N339 61 aa6.16□□□□□ -1.42
SDF4-205ENST00000465727 MUC12Q9UKN1 5478 aa6.15□□□□□ -1.42
SDF4-205ENST00000465727 KRTAP5-9P26371 169 aa6.15□□□□□ -1.42
SDF4-205ENST00000465727 KRTAP19-3Q7Z4W3 81 aa6.12□□□□□ -1.43
SDF4-205ENST00000465727 KRTAP20-1Q3LI63 56 aa6.02□□□□□ -1.45
SDF4-205ENST00000465727 MDN1Q9NU22 5596 aa6□□□□□ -1.45
SDF4-205ENST00000465727 SPRR2FQ96RM1 72 aa5.98□□□□□ -1.45
SDF4-205ENST00000465727 MT1AP04731 61 aa5.9□□□□□ -1.46
SDF4-205ENST00000465727 SPRR2EP22531 72 aa5.87□□□□□ -1.47
SDF4-205ENST00000465727 SPRR2BP35325 72 aa5.87□□□□□ -1.47
SDF4-205ENST00000465727 SPRR2AP35326 72 aa5.87□□□□□ -1.47
SDF4-205ENST00000465727 LCE5AQ5TCM9 118 aa5.86□□□□□ -1.47
SDF4-205ENST00000465727 LCE3BQ5TA77 95 aa5.85□□□□□ -1.47
SDF4-205ENST00000465727 LCE1AQ5T7P2 110 aa5.83□□□□□ -1.48
SDF4-205ENST00000465727 KRTAP4-9Q9BYQ8 210 aa5.73□□□□□ -1.49
SDF4-205ENST00000465727 LCE3DQ9BYE3 92 aa5.71□□□□□ -1.5
SDF4-205ENST00000465727 LCE3EQ5T5B0 92 aa5.68□□□□□ -1.5
SDF4-205ENST00000465727 SPRR2DP22532 72 aa5.68□□□□□ -1.5
SDF4-205ENST00000465727 KRTAP6-1Q3LI64 71 aa5.64□□□□□ -1.51
SDF4-205ENST00000465727 DSTQ03001 7570 aaKnown RBP5.62□□□□□ -1.51
SDF4-205ENST00000465727 KRTAP2-2Q9BYT5 123 aa5.6□□□□□ -1.51
SDF4-205ENST00000465727 KRTAP5-5Q701N2 237 aaPredicted RBP5.59□□□□□ -1.51
SDF4-205ENST00000465727 SYNE1Q8NF91 8797 aaKnown RBP5.57□□□□□ -1.52
SDF4-205ENST00000465727 PRM1P04553 51 aa5.57□□□□□ -1.52
SDF4-205ENST00000465727 KRTAP6-2Q3LI66 62 aa5.28□□□□□ -1.56
SDF4-205ENST00000465727 KRTAP9-4Q9BYQ2 154 aa5.25□□□□□ -1.57
SDF4-205ENST00000465727 GPR98Q8WXG9 6306 aa5.12□□□□□ -1.59
SDF4-205ENST00000465727 MT3P25713 68 aa5.04□□□□□ -1.6
SDF4-205ENST00000465727 LCE1DQ5T752 114 aa5.03□□□□□ -1.6
SDF4-205ENST00000465727 LCE4AQ5TA78 99 aa5□□□□□ -1.61
SDF4-205ENST00000465727 MT4P47944 62 aa4.98□□□□□ -1.61
SDF4-205ENST00000465727 KRTAP5-4Q6L8H1 288 aa4.96□□□□□ -1.61
SDF4-205ENST00000465727 HMCN1Q96RW7 5635 aa4.93□□□□□ -1.62
SDF4-205ENST00000465727 KRTAP4-6Q9BYQ5 205 aa4.86□□□□□ -1.63
SDF4-205ENST00000465727 OBSCNQ5VST9 7968 aa4.72□□□□□ -1.65
SDF4-205ENST00000465727 AHNAK2Q8IVF2 5795 aa4.7□□□□□ -1.66
SDF4-205ENST00000465727 KRTAP20-2Q3LI61 65 aa4.68□□□□□ -1.66
SDF4-205ENST00000465727 KRTAP5-10Q6L8G5 202 aa4.68□□□□□ -1.66
SDF4-205ENST00000465727 LCE1FQ5T754 118 aa4.64□□□□□ -1.67
SDF4-205ENST00000465727 KRTAP5-7Q6L8G8 165 aa4.58□□□□□ -1.68
SDF4-205ENST00000465727 LCE1EQ5T753 118 aa4.55□□□□□ -1.68
SDF4-205ENST00000465727 KRTAP5-3Q6L8H2 238 aa4.55□□□□□ -1.68
SDF4-205ENST00000465727 KRTAP5-2Q701N4 177 aa4.37□□□□□ -1.71
SDF4-205ENST00000465727 KRTAP4-11Q9BYQ6 195 aa4.24□□□□□ -1.73
SDF4-205ENST00000465727 MUC5ACP98088 5654 aa4.23□□□□□ -1.73
SDF4-205ENST00000465727 KRTAP9-9Q9BYP9 154 aa4.17□□□□□ -1.74
SDF4-205ENST00000465727 KRTAP5-8O75690 187 aa4.12□□□□□ -1.75
SDF4-205ENST00000465727 KRTAP5-1Q6L8H4 278 aa4.05□□□□□ -1.76
SDF4-205ENST00000465727 AHNAKQ09666 5890 aaKnown RBP4□□□□□ -1.77
SDF4-205ENST00000465727 LCE1BQ5T7P3 118 aa3.92□□□□□ -1.78
SDF4-205ENST00000465727 MUC5BQ9HC84 5762 aaPredicted RBP3.88□□□□□ -1.79
SDF4-205ENST00000465727 LCE1CQ5T751 118 aa3.82□□□□□ -1.8
SDF4-205ENST00000465727 KRTAP4-2Q9BYR5 136 aa3.77□□□□□ -1.81
SDF4-205ENST00000465727 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.67□□□□□ -1.82
SDF4-205ENST00000465727 KRTAP21-2Q3LI59 83 aa3.64□□□□□ -1.83
SDF4-205ENST00000465727 KRTAP21-1Q3LI58 79 aa3.61□□□□□ -1.83
SDF4-205ENST00000465727 KRTAP5-11Q6L8G4 156 aa3.24□□□□□ -1.89
SDF4-205ENST00000465727 KRTAP4-4Q9BYR3 166 aa3.23□□□□□ -1.89
SDF4-205ENST00000465727 KRTAP4-12Q9BQ66 201 aa3.21□□□□□ -1.9
SDF4-205ENST00000465727 MUC19Q7Z5P9 8384 aa3.16□□□□□ -1.9
SDF4-205ENST00000465727 PHGR1C9JFL3 82 aa2.79□□□□□ -1.96
SDF4-205ENST00000465727 MUC16Q8WXI7 14507 aa1.91□□□□□ -2.1
Retrieved 78 of 20,778 RNA–protein pairs in 13.3 ms