RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 SERP1Q9Y6X1 66 aa4.8□□□□□ -1.64
SMC1A-204ENST00000463684 KRTAP5-5Q701N2 237 aaPredicted RBP4.77□□□□□ -1.65
SMC1A-204ENST00000463684 SMIM20Q8N5G0 67 aa4.77□□□□□ -1.65
SMC1A-204ENST00000463684 KRTAP4-11Q9BYQ6 195 aa4.76□□□□□ -1.65
SMC1A-204ENST00000463684 TNP1P09430 55 aa4.75□□□□□ -1.65
SMC1A-204ENST00000463684 SPANXA2-OT1Q8N9U9 137 aa4.74□□□□□ -1.65
SMC1A-204ENST00000463684 A0A1B0GU33 70 aa4.73□□□□□ -1.65
SMC1A-204ENST00000463684 KRTAP4-2Q9BYR5 136 aa4.73□□□□□ -1.65
SMC1A-204ENST00000463684 SNURFQ9Y675 71 aa4.73□□□□□ -1.65
SMC1A-204ENST00000463684 J3QR89 54 aa4.71□□□□□ -1.66
SMC1A-204ENST00000463684 KRTAP12-3P60328 96 aa4.66□□□□□ -1.66
SMC1A-204ENST00000463684 SYNE1Q8NF91 8797 aaKnown RBP4.65□□□□□ -1.67
SMC1A-204ENST00000463684 COA5Q86WW8 74 aa4.64□□□□□ -1.67
SMC1A-204ENST00000463684 SMIM26A0A096LP01 95 aa4.62□□□□□ -1.67
SMC1A-204ENST00000463684 KRTAP15-1Q3LI76 137 aa4.61□□□□□ -1.67
SMC1A-204ENST00000463684 A8MU10 97 aa4.54□□□□□ -1.68
SMC1A-204ENST00000463684 AHNAKQ09666 5890 aaKnown RBP4.5□□□□□ -1.69
SMC1A-204ENST00000463684 A0A1B0GV90 55 aa4.5□□□□□ -1.69
SMC1A-204ENST00000463684 MUC5ACP98088 5654 aa4.5□□□□□ -1.69
SMC1A-204ENST00000463684 KRTAP5-8O75690 187 aa4.49□□□□□ -1.69
SMC1A-204ENST00000463684 SERP2Q8N6R1 65 aa4.46□□□□□ -1.7
SMC1A-204ENST00000463684 MUC5BQ9HC84 5762 aaPredicted RBP4.45□□□□□ -1.7
SMC1A-204ENST00000463684 A0A1B0GU69 56 aa4.45□□□□□ -1.7
SMC1A-204ENST00000463684 KRTAP5-2Q701N4 177 aa4.45□□□□□ -1.7
SMC1A-204ENST00000463684 SVIPQ8NHG7 77 aa4.36□□□□□ -1.71
SMC1A-204ENST00000463684 OBSCNQ5VST9 7968 aa4.35□□□□□ -1.71
SMC1A-204ENST00000463684 MT1AP04731 61 aa4.32□□□□□ -1.72
SMC1A-204ENST00000463684 KRTAP6-1Q3LI64 71 aa4.32□□□□□ -1.72
SMC1A-204ENST00000463684 K7ERU9 68 aa4.28□□□□□ -1.72
SMC1A-204ENST00000463684 KRTAP25-1Q3LHN0 102 aa4.26□□□□□ -1.73
SMC1A-204ENST00000463684 LCE3CQ5T5A8 94 aa4.25□□□□□ -1.73
SMC1A-204ENST00000463684 KRTAP6-2Q3LI66 62 aa4.23□□□□□ -1.73
SMC1A-204ENST00000463684 PRR15LQ9BU68 103 aa4.19□□□□□ -1.74
SMC1A-204ENST00000463684 H7BZZ5 65 aa4.18□□□□□ -1.74
SMC1A-204ENST00000463684 COX7CP15954 63 aa4.14□□□□□ -1.75
SMC1A-204ENST00000463684 PCP4P48539 62 aa4.11□□□□□ -1.75
SMC1A-204ENST00000463684 KRTAP5-1Q6L8H4 278 aa4.09□□□□□ -1.75
SMC1A-204ENST00000463684 A0A0A0MQY5 61 aa4.03□□□□□ -1.76
SMC1A-204ENST00000463684 UQCR11O14957 56 aa4.03□□□□□ -1.76
SMC1A-204ENST00000463684 MT3P25713 68 aa4.01□□□□□ -1.77
SMC1A-204ENST00000463684 LINC01558Q9Y6Z2 57 aa3.99□□□□□ -1.77
SMC1A-204ENST00000463684 KRTAP9-6A8MVA2 160 aa3.98□□□□□ -1.77
SMC1A-204ENST00000463684 K7ERS5 55 aa3.95□□□□□ -1.78
SMC1A-204ENST00000463684 MIR22HGQ0VDD5 57 aa3.88□□□□□ -1.79
SMC1A-204ENST00000463684 ATP5EP56381 51 aaPredicted RBP3.8□□□□□ -1.8
SMC1A-204ENST00000463684 RPS28P62857 69 aaKnown RBP3.78□□□□□ -1.8
SMC1A-204ENST00000463684 LCE1EQ5T753 118 aa3.77□□□□□ -1.81
SMC1A-204ENST00000463684 ANAPC13Q9BS18 74 aa3.74□□□□□ -1.81
SMC1A-204ENST00000463684 CCDC179H3BU77 68 aa3.66□□□□□ -1.82
SMC1A-204ENST00000463684 CDC42SE1Q9NRR8 79 aa3.64□□□□□ -1.83
SMC1A-204ENST00000463684 LCE1BQ5T7P3 118 aa3.61□□□□□ -1.83
SMC1A-204ENST00000463684 Q1T7F1 81 aa3.59□□□□□ -1.83
SMC1A-204ENST00000463684 ROMO1P60602 79 aa3.54□□□□□ -1.84
SMC1A-204ENST00000463684 PSPHP1O15172 72 aa3.53□□□□□ -1.84
SMC1A-204ENST00000463684 TMEM258P61165 79 aa3.5□□□□□ -1.85
SMC1A-204ENST00000463684 LCE1CQ5T751 118 aa3.5□□□□□ -1.85
SMC1A-204ENST00000463684 V9GYY9 64 aa3.46□□□□□ -1.86
SMC1A-204ENST00000463684 A6NED7 52 aa3.39□□□□□ -1.87
SMC1A-204ENST00000463684 PRAC1Q96KF2 57 aa3.34□□□□□ -1.87
SMC1A-204ENST00000463684 LCE1FQ5T754 118 aa3.26□□□□□ -1.89
SMC1A-204ENST00000463684 KRTAP5-11Q6L8G4 156 aa3.25□□□□□ -1.89
SMC1A-204ENST00000463684 NDUFAF8A1L188 74 aa3.2□□□□□ -1.9
SMC1A-204ENST00000463684 PHGR1C9JFL3 82 aa3.16□□□□□ -1.9
SMC1A-204ENST00000463684 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.11□□□□□ -1.91
SMC1A-204ENST00000463684 PRO0628Q9UI54 55 aa3.07□□□□□ -1.92
SMC1A-204ENST00000463684 LCE3DQ9BYE3 92 aa2.98□□□□□ -1.93
SMC1A-204ENST00000463684 PMAIP1Q13794 54 aa2.87□□□□□ -1.95
SMC1A-204ENST00000463684 BRK1Q8WUW1 75 aa2.86□□□□□ -1.95
SMC1A-204ENST00000463684 KRTAP21-2Q3LI59 83 aa2.84□□□□□ -1.95
SMC1A-204ENST00000463684 LCE3EQ5T5B0 92 aa2.81□□□□□ -1.96
SMC1A-204ENST00000463684 KTN1-AS1Q86SY8 53 aa2.78□□□□□ -1.96
SMC1A-204ENST00000463684 KRTAP4-4Q9BYR3 166 aa2.7□□□□□ -1.98
SMC1A-204ENST00000463684 MUC19Q7Z5P9 8384 aa2.69□□□□□ -1.98
SMC1A-204ENST00000463684 KRTAP21-1Q3LI58 79 aa2.41□□□□□ -2.02
SMC1A-204ENST00000463684 LUZP6Q538Z0 58 aa2.37□□□□□ -2.03
SMC1A-204ENST00000463684 INE1O15225 51 aa1.95□□□□□ -2.1
SMC1A-204ENST00000463684 MUC16Q8WXI7 14507 aa1.88□□□□□ -2.11
SMC1A-204ENST00000463684 PRM1P04553 51 aa1.77□□□□□ -2.13
Retrieved 78 of 20,778 RNA–protein pairs in 16.1 ms