RNA–Protein interactions for RNA: ENST00000463147.1

USH2A-203, Transcript of usherin, humanhuman

TSL 2

Gene USH2A, Length 618 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-203ENST00000463147 LRP1Q07954 4544 aaKnown RBP0.73□□□□□ -2.29
USH2A-203ENST00000463147 DNAH5Q8TE73 4624 aa0.72□□□□□ -2.29
USH2A-203ENST00000463147 FAT2Q9NYQ8 4349 aa0.72□□□□□ -2.29
USH2A-203ENST00000463147 HSPG2P98160 4391 aa0.71□□□□□ -2.3
USH2A-203ENST00000463147 PKD1P98161 4303 aa0.71□□□□□ -2.3
USH2A-203ENST00000463147 SPRR2GQ9BYE4 73 aa0.71□□□□□ -2.3
USH2A-203ENST00000463147 LRP1BQ9NZR2 4599 aa0.71□□□□□ -2.3
USH2A-203ENST00000463147 FLNCQ14315 2725 aa0.7□□□□□ -2.3
USH2A-203ENST00000463147 DYNC1H1Q14204 4646 aaKnown RBP0.69□□□□□ -2.3
USH2A-203ENST00000463147 PKHD1P08F94 4074 aa0.69□□□□□ -2.3
USH2A-203ENST00000463147 MT1HL1P0DM35 61 aa0.69□□□□□ -2.3
USH2A-203ENST00000463147 TNXBP22105 4242 aa0.69□□□□□ -2.3
USH2A-203ENST00000463147 PLECQ15149 4684 aaKnown RBP0.68□□□□□ -2.3
USH2A-203ENST00000463147 FAT3Q8TDW7 4589 aa0.68□□□□□ -2.3
USH2A-203ENST00000463147 PCLOQ9Y6V0 5065 aa0.68□□□□□ -2.3
USH2A-203ENST00000463147 FLGP20930 4061 aaPredicted RBP0.67□□□□□ -2.3
USH2A-203ENST00000463147 VPS13BQ7Z7G8 4022 aa0.67□□□□□ -2.3
USH2A-203ENST00000463147 KRTAP19-2Q3LHN2 52 aa0.67□□□□□ -2.3
USH2A-203ENST00000463147 KRTAP19-8Q3LI54 63 aa0.67□□□□□ -2.3
USH2A-203ENST00000463147 KRTAP19-5Q3LI72 72 aa0.67□□□□□ -2.3
USH2A-203ENST00000463147 UBR4Q5T4S7 5183 aa0.67□□□□□ -2.3
USH2A-203ENST00000463147 FAT1Q14517 4588 aa0.65□□□□□ -2.31
USH2A-203ENST00000463147 MT1XP80297 61 aa0.65□□□□□ -2.31
USH2A-203ENST00000463147 HERC1Q15751 4861 aa0.65□□□□□ -2.31
USH2A-203ENST00000463147 RYR3Q15413 4870 aa0.65□□□□□ -2.31
USH2A-203ENST00000463147 HYDINQ4G0P3 5121 aa0.64□□□□□ -2.31
USH2A-203ENST00000463147 BIRC6Q9NR09 4857 aa0.64□□□□□ -2.31
USH2A-203ENST00000463147 PRM1P04553 51 aa0.64□□□□□ -2.31
USH2A-203ENST00000463147 EPPK1P58107 5090 aaKnown RBP0.63□□□□□ -2.31
USH2A-203ENST00000463147 RYR1P21817 5038 aa0.63□□□□□ -2.31
USH2A-203ENST00000463147 MT1BP07438 61 aa0.62□□□□□ -2.31
USH2A-203ENST00000463147 KMT2CQ8NEZ4 4911 aaKnown RBP0.62□□□□□ -2.31
USH2A-203ENST00000463147 KIAA1109Q2LD37 5005 aa0.61□□□□□ -2.31
USH2A-203ENST00000463147 MT2AP02795 61 aa0.61□□□□□ -2.31
USH2A-203ENST00000463147 MT1AP04731 61 aa0.61□□□□□ -2.31
USH2A-203ENST00000463147 MT1EP04732 61 aa0.61□□□□□ -2.31
USH2A-203ENST00000463147 MT1LQ93083 61 aa0.61□□□□□ -2.31
USH2A-203ENST00000463147 MUC17Q685J3 4493 aa0.6□□□□□ -2.31
USH2A-203ENST00000463147 MT1FP04733 61 aa0.6□□□□□ -2.31
USH2A-203ENST00000463147 LPAP08519 4548 aa0.6□□□□□ -2.31
USH2A-203ENST00000463147 RYR2Q92736 4967 aa0.59□□□□□ -2.31
USH2A-203ENST00000463147 HERC2O95714 4834 aa0.58□□□□□ -2.32
USH2A-203ENST00000463147 KRTAP19-7Q3SYF9 63 aa0.58□□□□□ -2.32
USH2A-203ENST00000463147 SYNE1Q8NF91 8797 aaKnown RBP0.57□□□□□ -2.32
USH2A-203ENST00000463147 GPR98Q8WXG9 6306 aa0.57□□□□□ -2.32
USH2A-203ENST00000463147 MT1HP80294 61 aa0.57□□□□□ -2.32
USH2A-203ENST00000463147 LRP2P98164 4655 aa0.57□□□□□ -2.32
USH2A-203ENST00000463147 KRTAP6-2Q3LI66 62 aa0.57□□□□□ -2.32
USH2A-203ENST00000463147 MUC5ACP98088 5654 aa0.57□□□□□ -2.32
USH2A-203ENST00000463147 HMCN2Q8NDA2 5059 aa0.57□□□□□ -2.32
USH2A-203ENST00000463147 ABCA13Q86UQ4 5058 aa0.57□□□□□ -2.32
USH2A-203ENST00000463147 MUC2Q02817 5179 aa0.56□□□□□ -2.32
USH2A-203ENST00000463147 MT1GP13640 62 aa0.56□□□□□ -2.32
USH2A-203ENST00000463147 KRTAP21-1Q3LI58 79 aa0.56□□□□□ -2.32
USH2A-203ENST00000463147 SPRR2FQ96RM1 72 aa0.56□□□□□ -2.32
USH2A-203ENST00000463147 SPRR2AP35326 72 aa0.54□□□□□ -2.32
USH2A-203ENST00000463147 FSIP2Q5CZC0 6907 aa0.53□□□□□ -2.32
USH2A-203ENST00000463147 SPRR2BP35325 72 aa0.53□□□□□ -2.32
USH2A-203ENST00000463147 MT1MQ8N339 61 aa0.53□□□□□ -2.32
USH2A-203ENST00000463147 SPRR2DP22532 72 aa0.52□□□□□ -2.33
USH2A-203ENST00000463147 SPRR2EP22531 72 aa0.51□□□□□ -2.33
USH2A-203ENST00000463147 FAT4Q6V0I7 4981 aa0.51□□□□□ -2.33
USH2A-203ENST00000463147 RNF213Q63HN8 5207 aa0.51□□□□□ -2.33
USH2A-203ENST00000463147 KRTAP6-1Q3LI64 71 aa0.49□□□□□ -2.33
USH2A-203ENST00000463147 SYNE2Q8WXH0 6885 aaKnown RBP0.47□□□□□ -2.33
USH2A-203ENST00000463147 MDN1Q9NU22 5596 aa0.46□□□□□ -2.34
USH2A-203ENST00000463147 KMT2DO14686 5537 aa0.45□□□□□ -2.34
USH2A-203ENST00000463147 SSPOA2VEC9 5147 aa0.45□□□□□ -2.34
USH2A-203ENST00000463147 PHGR1C9JFL3 82 aa0.45□□□□□ -2.34
USH2A-203ENST00000463147 NEBP20929 6669 aa0.45□□□□□ -2.34
USH2A-203ENST00000463147 USH2AO75445 5202 aa0.43□□□□□ -2.34
USH2A-203ENST00000463147 KRTAP19-6Q3LI70 58 aa0.41□□□□□ -2.34
USH2A-203ENST00000463147 MACF1Q9UPN3 7388 aaKnown RBP0.4□□□□□ -2.35
USH2A-203ENST00000463147 MUC12Q9UKN1 5478 aa0.39□□□□□ -2.35
USH2A-203ENST00000463147 KRTAP20-1Q3LI63 56 aa0.35□□□□□ -2.35
USH2A-203ENST00000463147 DSTQ03001 7570 aaKnown RBP0.33□□□□□ -2.36
USH2A-203ENST00000463147 KRTAP20-2Q3LI61 65 aa0.28□□□□□ -2.36
USH2A-203ENST00000463147 MT4P47944 62 aa0.27□□□□□ -2.37
Retrieved 78 of 20,778 RNA–protein pairs in 66.8 ms