RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 SPRR2BP35325 72 aa4.22□□□□□ -1.73
NPHP4-204ENST00000460696 SPRR2AP35326 72 aa4.22□□□□□ -1.73
NPHP4-204ENST00000460696 KRTAP9-7A8MTY7 169 aa4.16□□□□□ -1.74
NPHP4-204ENST00000460696 SSPOA2VEC9 5147 aa4.14□□□□□ -1.75
NPHP4-204ENST00000460696 MACF1Q9UPN3 7388 aaKnown RBP4.13□□□□□ -1.75
NPHP4-204ENST00000460696 FCGBPQ9Y6R7 5405 aaPredicted RBP4.12□□□□□ -1.75
NPHP4-204ENST00000460696 KRTAP19-6Q3LI70 58 aa4.11□□□□□ -1.75
NPHP4-204ENST00000460696 KRTAP4-7Q9BYR0 210 aa4.09□□□□□ -1.76
NPHP4-204ENST00000460696 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.08□□□□□ -1.76
NPHP4-204ENST00000460696 SPRR2DP22532 72 aa4.05□□□□□ -1.76
NPHP4-204ENST00000460696 MUC12Q9UKN1 5478 aa3.96□□□□□ -1.78
NPHP4-204ENST00000460696 MT1GP13640 62 aa3.95□□□□□ -1.78
NPHP4-204ENST00000460696 MT1LQ93083 61 aa3.95□□□□□ -1.78
NPHP4-204ENST00000460696 MT1EP04732 61 aa3.94□□□□□ -1.78
NPHP4-204ENST00000460696 KRTAP19-4Q3LI73 84 aa3.93□□□□□ -1.78
NPHP4-204ENST00000460696 KRTAP19-7Q3SYF9 63 aa3.93□□□□□ -1.78
NPHP4-204ENST00000460696 KRTAP4-3Q9BYR4 195 aa3.84□□□□□ -1.8
NPHP4-204ENST00000460696 KRTAP19-3Q7Z4W3 81 aa3.81□□□□□ -1.8
NPHP4-204ENST00000460696 LOC100996750A0A140TA64 210 aa3.8□□□□□ -1.8
NPHP4-204ENST00000460696 KRTAP9-6A8MVA2 160 aa3.8□□□□□ -1.8
NPHP4-204ENST00000460696 KRTAP6-3Q3LI67 103 aa3.79□□□□□ -1.8
NPHP4-204ENST00000460696 LCE3BQ5TA77 95 aa3.78□□□□□ -1.8
NPHP4-204ENST00000460696 MDN1Q9NU22 5596 aa3.78□□□□□ -1.8
NPHP4-204ENST00000460696 MT4P47944 62 aa3.75□□□□□ -1.81
NPHP4-204ENST00000460696 KRTAP20-1Q3LI63 56 aa3.75□□□□□ -1.81
NPHP4-204ENST00000460696 MT1MQ8N339 61 aa3.74□□□□□ -1.81
NPHP4-204ENST00000460696 KRTAP12-4P60329 112 aa3.71□□□□□ -1.81
NPHP4-204ENST00000460696 NEBP20929 6669 aa3.64□□□□□ -1.83
NPHP4-204ENST00000460696 LCE1AQ5T7P2 110 aa3.64□□□□□ -1.83
NPHP4-204ENST00000460696 KRTAP4-9Q9BYQ8 210 aa3.63□□□□□ -1.83
NPHP4-204ENST00000460696 KRTAP2-3P0C7H8 128 aa3.62□□□□□ -1.83
NPHP4-204ENST00000460696 KRTAP2-4Q9BYR9 128 aa3.62□□□□□ -1.83
NPHP4-204ENST00000460696 KRTAP2-1Q9BYU5 128 aa3.62□□□□□ -1.83
NPHP4-204ENST00000460696 LCE3DQ9BYE3 92 aa3.51□□□□□ -1.85
NPHP4-204ENST00000460696 KRTAP2-2Q9BYT5 123 aa3.49□□□□□ -1.85
NPHP4-204ENST00000460696 LCE5AQ5TCM9 118 aa3.46□□□□□ -1.86
NPHP4-204ENST00000460696 LCE3EQ5T5B0 92 aa3.44□□□□□ -1.86
NPHP4-204ENST00000460696 KRTAP5-9P26371 169 aa3.41□□□□□ -1.86
NPHP4-204ENST00000460696 KRTAP6-1Q3LI64 71 aa3.37□□□□□ -1.87
NPHP4-204ENST00000460696 MT1AP04731 61 aa3.36□□□□□ -1.87
NPHP4-204ENST00000460696 GPR98Q8WXG9 6306 aa3.34□□□□□ -1.87
NPHP4-204ENST00000460696 MT3P25713 68 aa3.25□□□□□ -1.89
NPHP4-204ENST00000460696 PRM1P04553 51 aa3.25□□□□□ -1.89
NPHP4-204ENST00000460696 LCE1DQ5T752 114 aa3.21□□□□□ -1.9
NPHP4-204ENST00000460696 KRTAP4-6Q9BYQ5 205 aa3.19□□□□□ -1.9
NPHP4-204ENST00000460696 KRTAP6-2Q3LI66 62 aa3.15□□□□□ -1.9
NPHP4-204ENST00000460696 LCE4AQ5TA78 99 aa3.15□□□□□ -1.9
NPHP4-204ENST00000460696 LCE1BQ5T7P3 118 aa3.14□□□□□ -1.91
NPHP4-204ENST00000460696 KRTAP9-4Q9BYQ2 154 aa3.13□□□□□ -1.91
NPHP4-204ENST00000460696 MUC19Q7Z5P9 8384 aa3□□□□□ -1.93
NPHP4-204ENST00000460696 KRTAP20-2Q3LI61 65 aa2.93□□□□□ -1.94
NPHP4-204ENST00000460696 HMCN1Q96RW7 5635 aa2.93□□□□□ -1.94
NPHP4-204ENST00000460696 KRTAP5-5Q701N2 237 aaPredicted RBP2.87□□□□□ -1.95
NPHP4-204ENST00000460696 MUC5ACP98088 5654 aa2.87□□□□□ -1.95
NPHP4-204ENST00000460696 KRTAP5-3Q6L8H2 238 aa2.75□□□□□ -1.97
NPHP4-204ENST00000460696 KRTAP9-9Q9BYP9 154 aa2.72□□□□□ -1.97
NPHP4-204ENST00000460696 KRTAP4-11Q9BYQ6 195 aa2.71□□□□□ -1.98
NPHP4-204ENST00000460696 AHNAK2Q8IVF2 5795 aa2.7□□□□□ -1.98
NPHP4-204ENST00000460696 KRTAP5-4Q6L8H1 288 aa2.69□□□□□ -1.98
NPHP4-204ENST00000460696 LCE1CQ5T751 118 aa2.57□□□□□ -2
NPHP4-204ENST00000460696 LCE1EQ5T753 118 aa2.57□□□□□ -2
NPHP4-204ENST00000460696 LCE1FQ5T754 118 aa2.57□□□□□ -2
NPHP4-204ENST00000460696 KRTAP4-12Q9BQ66 201 aa2.56□□□□□ -2
NPHP4-204ENST00000460696 KRTAP4-2Q9BYR5 136 aa2.56□□□□□ -2
NPHP4-204ENST00000460696 KRTAP5-8O75690 187 aa2.5□□□□□ -2.01
NPHP4-204ENST00000460696 MUC5BQ9HC84 5762 aaPredicted RBP2.44□□□□□ -2.02
NPHP4-204ENST00000460696 KRTAP4-4Q9BYR3 166 aa2.38□□□□□ -2.03
NPHP4-204ENST00000460696 KRTAP5-2Q701N4 177 aa2.34□□□□□ -2.03
NPHP4-204ENST00000460696 KRTAP5-10Q6L8G5 202 aa2.34□□□□□ -2.03
NPHP4-204ENST00000460696 AHNAKQ09666 5890 aaKnown RBP2.32□□□□□ -2.04
NPHP4-204ENST00000460696 KRTAP5-1Q6L8H4 278 aa2.16□□□□□ -2.06
NPHP4-204ENST00000460696 KRTAP5-7Q6L8G8 165 aa2.15□□□□□ -2.06
NPHP4-204ENST00000460696 KRTAP21-2Q3LI59 83 aa1.97□□□□□ -2.09
NPHP4-204ENST00000460696 PHGR1C9JFL3 82 aa1.94□□□□□ -2.1
NPHP4-204ENST00000460696 KRTAP5-11Q6L8G4 156 aa1.86□□□□□ -2.11
NPHP4-204ENST00000460696 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.84□□□□□ -2.11
NPHP4-204ENST00000460696 KRTAP21-1Q3LI58 79 aa1.67□□□□□ -2.14
NPHP4-204ENST00000460696 MUC16Q8WXI7 14507 aa1.21□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 139 ms