RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 PSPHP1O15172 72 aa6.26□□□□□ -1.41
USP39-208ENST00000455732 MT1GP13640 62 aa6.24□□□□□ -1.41
USP39-208ENST00000455732 KRTAP4-9Q9BYQ8 210 aa6.2□□□□□ -1.42
USP39-208ENST00000455732 MT1LQ93083 61 aa6.19□□□□□ -1.42
USP39-208ENST00000455732 K7ERS5 55 aa6.18□□□□□ -1.42
USP39-208ENST00000455732 PP632Q6XCG6 107 aa6.18□□□□□ -1.42
USP39-208ENST00000455732 MT1MQ8N339 61 aa6.13□□□□□ -1.43
USP39-208ENST00000455732 KRTAP25-1Q3LHN0 102 aa6.12□□□□□ -1.43
USP39-208ENST00000455732 RPS28P62857 69 aaKnown RBP6.11□□□□□ -1.43
USP39-208ENST00000455732 KRTAP12-3P60328 96 aa6.07□□□□□ -1.44
USP39-208ENST00000455732 A6NED7 52 aa6.06□□□□□ -1.44
USP39-208ENST00000455732 LCE1DQ5T752 114 aa6.04□□□□□ -1.44
USP39-208ENST00000455732 HMCN1Q96RW7 5635 aa5.97□□□□□ -1.45
USP39-208ENST00000455732 KRTAP4-3Q9BYR4 195 aa5.97□□□□□ -1.45
USP39-208ENST00000455732 LCE4AQ5TA78 99 aa5.96□□□□□ -1.46
USP39-208ENST00000455732 MT4P47944 62 aa5.95□□□□□ -1.46
USP39-208ENST00000455732 KRTAP23-1A1A580 65 aa5.93□□□□□ -1.46
USP39-208ENST00000455732 CDC42SE1Q9NRR8 79 aa5.88□□□□□ -1.47
USP39-208ENST00000455732 KRTAP5-4Q6L8H1 288 aa5.85□□□□□ -1.47
USP39-208ENST00000455732 KRTAP4-7Q9BYR0 210 aa5.85□□□□□ -1.47
USP39-208ENST00000455732 AHNAK2Q8IVF2 5795 aa5.84□□□□□ -1.47
USP39-208ENST00000455732 KRTAP19-4Q3LI73 84 aa5.8□□□□□ -1.48
USP39-208ENST00000455732 ROMO1P60602 79 aa5.79□□□□□ -1.48
USP39-208ENST00000455732 KRTAP5-10Q6L8G5 202 aa5.74□□□□□ -1.49
USP39-208ENST00000455732 H3BS24 57 aa5.72□□□□□ -1.49
USP39-208ENST00000455732 KRTAP15-1Q3LI76 137 aa5.72□□□□□ -1.49
USP39-208ENST00000455732 KRTAP4-6Q9BYQ5 205 aa5.71□□□□□ -1.5
USP39-208ENST00000455732 KRTAP5-5Q701N2 237 aaPredicted RBP5.64□□□□□ -1.51
USP39-208ENST00000455732 LCE3CQ5T5A8 94 aa5.6□□□□□ -1.51
USP39-208ENST00000455732 KRTAP5-7Q6L8G8 165 aa5.55□□□□□ -1.52
USP39-208ENST00000455732 KRTAP5-3Q6L8H2 238 aa5.54□□□□□ -1.52
USP39-208ENST00000455732 LOC100996750A0A140TA64 210 aa5.53□□□□□ -1.52
USP39-208ENST00000455732 KRTAP20-2Q3LI61 65 aa5.5□□□□□ -1.53
USP39-208ENST00000455732 SPRR5A0A1B0GTR4 108 aa5.47□□□□□ -1.53
USP39-208ENST00000455732 KRTAP12-4P60329 112 aa5.43□□□□□ -1.54
USP39-208ENST00000455732 BRK1Q8WUW1 75 aa5.39□□□□□ -1.55
USP39-208ENST00000455732 SYNE1Q8NF91 8797 aaKnown RBP5.38□□□□□ -1.55
USP39-208ENST00000455732 SVIPQ8NHG7 77 aa5.32□□□□□ -1.56
USP39-208ENST00000455732 KRTAP9-6A8MVA2 160 aa5.28□□□□□ -1.56
USP39-208ENST00000455732 MT1AP04731 61 aa5.28□□□□□ -1.56
USP39-208ENST00000455732 KRTAP6-1Q3LI64 71 aa5.21□□□□□ -1.58
USP39-208ENST00000455732 PRO0628Q9UI54 55 aa5.14□□□□□ -1.59
USP39-208ENST00000455732 KRTAP5-2Q701N4 177 aa5.13□□□□□ -1.59
USP39-208ENST00000455732 PMAIP1Q13794 54 aa5.1□□□□□ -1.59
USP39-208ENST00000455732 KRTAP9-4Q9BYQ2 154 aa5.07□□□□□ -1.6
USP39-208ENST00000455732 KRTAP4-11Q9BYQ6 195 aa5.07□□□□□ -1.6
USP39-208ENST00000455732 KRTAP6-2Q3LI66 62 aa4.95□□□□□ -1.62
USP39-208ENST00000455732 KRTAP5-8O75690 187 aa4.9□□□□□ -1.63
USP39-208ENST00000455732 MUC5ACP98088 5654 aa4.85□□□□□ -1.63
USP39-208ENST00000455732 AHNAKQ09666 5890 aaKnown RBP4.85□□□□□ -1.63
USP39-208ENST00000455732 MUC5BQ9HC84 5762 aaPredicted RBP4.84□□□□□ -1.63
USP39-208ENST00000455732 MT3P25713 68 aa4.81□□□□□ -1.64
USP39-208ENST00000455732 KTN1-AS1Q86SY8 53 aa4.8□□□□□ -1.64
USP39-208ENST00000455732 PRAC1Q96KF2 57 aa4.8□□□□□ -1.64
USP39-208ENST00000455732 OBSCNQ5VST9 7968 aa4.75□□□□□ -1.65
USP39-208ENST00000455732 KRTAP9-9Q9BYP9 154 aa4.73□□□□□ -1.65
USP39-208ENST00000455732 KRTAP5-1Q6L8H4 278 aa4.6□□□□□ -1.67
USP39-208ENST00000455732 A0A0A0MQY5 61 aa4.43□□□□□ -1.7
USP39-208ENST00000455732 LCE1EQ5T753 118 aa4.41□□□□□ -1.7
USP39-208ENST00000455732 KRTAP4-12Q9BQ66 201 aa4.19□□□□□ -1.74
USP39-208ENST00000455732 KRTAP4-2Q9BYR5 136 aa4.16□□□□□ -1.74
USP39-208ENST00000455732 LCE1BQ5T7P3 118 aa4.1□□□□□ -1.75
USP39-208ENST00000455732 LCE1CQ5T751 118 aa4.09□□□□□ -1.75
USP39-208ENST00000455732 LUZP6Q538Z0 58 aa4.06□□□□□ -1.76
USP39-208ENST00000455732 LCE3DQ9BYE3 92 aa4.06□□□□□ -1.76
USP39-208ENST00000455732 LCE3EQ5T5B0 92 aa3.85□□□□□ -1.79
USP39-208ENST00000455732 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.77□□□□□ -1.81
USP39-208ENST00000455732 KRTAP5-11Q6L8G4 156 aa3.7□□□□□ -1.82
USP39-208ENST00000455732 NDUFAF8A1L188 74 aa3.62□□□□□ -1.83
USP39-208ENST00000455732 LCE1FQ5T754 118 aa3.59□□□□□ -1.83
USP39-208ENST00000455732 KRTAP21-2Q3LI59 83 aa3.45□□□□□ -1.86
USP39-208ENST00000455732 PHGR1C9JFL3 82 aa3.38□□□□□ -1.87
USP39-208ENST00000455732 KRTAP4-4Q9BYR3 166 aa3.12□□□□□ -1.91
USP39-208ENST00000455732 INE1O15225 51 aa3.07□□□□□ -1.92
USP39-208ENST00000455732 PRM1P04553 51 aa2.96□□□□□ -1.94
USP39-208ENST00000455732 MUC19Q7Z5P9 8384 aa2.94□□□□□ -1.94
USP39-208ENST00000455732 KRTAP21-1Q3LI58 79 aa2.57□□□□□ -2
USP39-208ENST00000455732 MUC16Q8WXI7 14507 aa2.08□□□□□ -2.08
Retrieved 78 of 20,778 RNA–protein pairs in 100.6 ms