RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 KRTAP4-3Q9BYR4 195 aa7.34□□□□□ -1.23
HMGB3-205ENST00000455596 LCE4AQ5TA78 99 aa7.33□□□□□ -1.24
HMGB3-205ENST00000455596 MIR22HGQ0VDD5 57 aa7.32□□□□□ -1.24
HMGB3-205ENST00000455596 LCE1DQ5T752 114 aa7.32□□□□□ -1.24
HMGB3-205ENST00000455596 KRTAP12-3P60328 96 aa7.31□□□□□ -1.24
HMGB3-205ENST00000455596 MT4P47944 62 aa7.25□□□□□ -1.25
HMGB3-205ENST00000455596 K7ERS5 55 aa7.21□□□□□ -1.26
HMGB3-205ENST00000455596 KRTAP25-1Q3LHN0 102 aa7.21□□□□□ -1.26
HMGB3-205ENST00000455596 V9GYY9 64 aa7.2□□□□□ -1.26
HMGB3-205ENST00000455596 KRTAP5-4Q6L8H1 288 aa7.18□□□□□ -1.26
HMGB3-205ENST00000455596 KRTAP4-7Q9BYR0 210 aa7.17□□□□□ -1.26
HMGB3-205ENST00000455596 PSPHP1O15172 72 aa7.16□□□□□ -1.26
HMGB3-205ENST00000455596 Q1T7F1 81 aa7.13□□□□□ -1.27
HMGB3-205ENST00000455596 GPR98Q8WXG9 6306 aa7.06□□□□□ -1.28
HMGB3-205ENST00000455596 KRTAP4-6Q9BYQ5 205 aa7.02□□□□□ -1.29
HMGB3-205ENST00000455596 HMCN1Q96RW7 5635 aa7□□□□□ -1.29
HMGB3-205ENST00000455596 KRTAP23-1A1A580 65 aa6.94□□□□□ -1.3
HMGB3-205ENST00000455596 A6NED7 52 aa6.93□□□□□ -1.3
HMGB3-205ENST00000455596 KRTAP19-4Q3LI73 84 aa6.92□□□□□ -1.3
HMGB3-205ENST00000455596 KRTAP5-5Q701N2 237 aaPredicted RBP6.89□□□□□ -1.31
HMGB3-205ENST00000455596 KRTAP15-1Q3LI76 137 aa6.83□□□□□ -1.32
HMGB3-205ENST00000455596 CDC42SE1Q9NRR8 79 aa6.81□□□□□ -1.32
HMGB3-205ENST00000455596 LOC100996750A0A140TA64 210 aa6.8□□□□□ -1.32
HMGB3-205ENST00000455596 KRTAP5-10Q6L8G5 202 aa6.79□□□□□ -1.32
HMGB3-205ENST00000455596 KRTAP20-2Q3LI61 65 aa6.78□□□□□ -1.32
HMGB3-205ENST00000455596 SPRR5A0A1B0GTR4 108 aa6.75□□□□□ -1.33
HMGB3-205ENST00000455596 KRTAP12-4P60329 112 aa6.74□□□□□ -1.33
HMGB3-205ENST00000455596 LCE3CQ5T5A8 94 aa6.73□□□□□ -1.33
HMGB3-205ENST00000455596 AHNAK2Q8IVF2 5795 aa6.73□□□□□ -1.33
HMGB3-205ENST00000455596 RPS28P62857 69 aaKnown RBP6.71□□□□□ -1.34
HMGB3-205ENST00000455596 ROMO1P60602 79 aa6.69□□□□□ -1.34
HMGB3-205ENST00000455596 KRTAP5-3Q6L8H2 238 aa6.65□□□□□ -1.34
HMGB3-205ENST00000455596 PCP4P48539 62 aa6.55□□□□□ -1.36
HMGB3-205ENST00000455596 KRTAP5-7Q6L8G8 165 aa6.54□□□□□ -1.36
HMGB3-205ENST00000455596 SYNE1Q8NF91 8797 aaKnown RBP6.54□□□□□ -1.36
HMGB3-205ENST00000455596 MT1AP04731 61 aa6.44□□□□□ -1.38
HMGB3-205ENST00000455596 KRTAP6-1Q3LI64 71 aa6.39□□□□□ -1.39
HMGB3-205ENST00000455596 KRTAP9-6A8MVA2 160 aa6.32□□□□□ -1.4
HMGB3-205ENST00000455596 KRTAP5-2Q701N4 177 aa6.28□□□□□ -1.4
HMGB3-205ENST00000455596 KRTAP9-4Q9BYQ2 154 aa6.22□□□□□ -1.41
HMGB3-205ENST00000455596 KRTAP4-11Q9BYQ6 195 aa6.19□□□□□ -1.42
HMGB3-205ENST00000455596 KRTAP6-2Q3LI66 62 aa6.1□□□□□ -1.43
HMGB3-205ENST00000455596 KRTAP5-8O75690 187 aa5.98□□□□□ -1.45
HMGB3-205ENST00000455596 MT3P25713 68 aa5.89□□□□□ -1.47
HMGB3-205ENST00000455596 BRK1Q8WUW1 75 aa5.89□□□□□ -1.47
HMGB3-205ENST00000455596 OBSCNQ5VST9 7968 aa5.84□□□□□ -1.47
HMGB3-205ENST00000455596 KRTAP9-9Q9BYP9 154 aa5.69□□□□□ -1.5
HMGB3-205ENST00000455596 KRTAP5-1Q6L8H4 278 aa5.63□□□□□ -1.51
HMGB3-205ENST00000455596 MUC5ACP98088 5654 aa5.54□□□□□ -1.52
HMGB3-205ENST00000455596 PMAIP1Q13794 54 aa5.53□□□□□ -1.52
HMGB3-205ENST00000455596 MUC5BQ9HC84 5762 aaPredicted RBP5.49□□□□□ -1.53
HMGB3-205ENST00000455596 AHNAKQ09666 5890 aaKnown RBP5.43□□□□□ -1.54
HMGB3-205ENST00000455596 LCE1EQ5T753 118 aa5.41□□□□□ -1.54
HMGB3-205ENST00000455596 PRAC1Q96KF2 57 aa5.33□□□□□ -1.56
HMGB3-205ENST00000455596 KRTAP4-2Q9BYR5 136 aa5.1□□□□□ -1.59
HMGB3-205ENST00000455596 LCE1BQ5T7P3 118 aa5.09□□□□□ -1.59
HMGB3-205ENST00000455596 KRTAP4-12Q9BQ66 201 aa5.09□□□□□ -1.59
HMGB3-205ENST00000455596 PRO0628Q9UI54 55 aa5.08□□□□□ -1.6
HMGB3-205ENST00000455596 LCE1CQ5T751 118 aa5.02□□□□□ -1.61
HMGB3-205ENST00000455596 KTN1-AS1Q86SY8 53 aa4.85□□□□□ -1.63
HMGB3-205ENST00000455596 LCE3DQ9BYE3 92 aa4.85□□□□□ -1.63
HMGB3-205ENST00000455596 SVIPQ8NHG7 77 aa4.69□□□□□ -1.66
HMGB3-205ENST00000455596 LCE3EQ5T5B0 92 aa4.57□□□□□ -1.68
HMGB3-205ENST00000455596 LUZP6Q538Z0 58 aa4.56□□□□□ -1.68
HMGB3-205ENST00000455596 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.56□□□□□ -1.68
HMGB3-205ENST00000455596 KRTAP5-11Q6L8G4 156 aa4.54□□□□□ -1.68
HMGB3-205ENST00000455596 LCE1FQ5T754 118 aa4.43□□□□□ -1.7
HMGB3-205ENST00000455596 H3BS24 57 aa4.27□□□□□ -1.73
HMGB3-205ENST00000455596 KRTAP21-2Q3LI59 83 aa4.2□□□□□ -1.74
HMGB3-205ENST00000455596 PHGR1C9JFL3 82 aa3.97□□□□□ -1.77
HMGB3-205ENST00000455596 KRTAP4-4Q9BYR3 166 aa3.85□□□□□ -1.79
HMGB3-205ENST00000455596 NDUFAF8A1L188 74 aa3.59□□□□□ -1.83
HMGB3-205ENST00000455596 MUC19Q7Z5P9 8384 aa3.57□□□□□ -1.84
HMGB3-205ENST00000455596 PRM1P04553 51 aa3.42□□□□□ -1.86
HMGB3-205ENST00000455596 KRTAP21-1Q3LI58 79 aa3.01□□□□□ -1.93
HMGB3-205ENST00000455596 INE1O15225 51 aa2.91□□□□□ -1.94
HMGB3-205ENST00000455596 A0A0A0MQY5 61 aa2.89□□□□□ -1.95
HMGB3-205ENST00000455596 MUC16Q8WXI7 14507 aa2.61□□□□□ -1.99
Retrieved 78 of 20,778 RNA–protein pairs in 75.5 ms