RNA–Protein interactions for RNA: ENST00000452776.1

SMCO1-202, Transcript of single-pass membrane protein with coiled-coil domains 1, humanhuman

TSL 1 (best)

Gene SMCO1, Length 1,846 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO1-202ENST00000452776 KRTAP12-3P60328 96 aa3.28□□□□□ -1.88
SMCO1-202ENST00000452776 KRTAP10-12P60413 245 aa3.28□□□□□ -1.88
SMCO1-202ENST00000452776 FSIP2Q5CZC0 6907 aa3.27□□□□□ -1.89
SMCO1-202ENST00000452776 MUC17Q685J3 4493 aa3.26□□□□□ -1.89
SMCO1-202ENST00000452776 CRCT1Q9UGL9 99 aa3.26□□□□□ -1.89
SMCO1-202ENST00000452776 KRTAP4-1Q9BYQ7 146 aa3.25□□□□□ -1.89
SMCO1-202ENST00000452776 KRTAP4-4Q9BYR3 166 aa3.25□□□□□ -1.89
SMCO1-202ENST00000452776 KRTAP10-5P60370 271 aa3.17□□□□□ -1.9
SMCO1-202ENST00000452776 LCE3CQ5T5A8 94 aa3.13□□□□□ -1.91
SMCO1-202ENST00000452776 KRTAP2-3P0C7H8 128 aa3.12□□□□□ -1.91
SMCO1-202ENST00000452776 KRTAP2-4Q9BYR9 128 aa3.12□□□□□ -1.91
SMCO1-202ENST00000452776 KRTAP2-1Q9BYU5 128 aa3.12□□□□□ -1.91
SMCO1-202ENST00000452776 KRTAP19-8Q3LI54 63 aa3.09□□□□□ -1.91
SMCO1-202ENST00000452776 KRTAP2-2Q9BYT5 123 aa3.07□□□□□ -1.92
SMCO1-202ENST00000452776 M0R2T5 61 aa3.04□□□□□ -1.92
SMCO1-202ENST00000452776 MT1XP80297 61 aa3.02□□□□□ -1.93
SMCO1-202ENST00000452776 SSPOA2VEC9 5147 aa2.94□□□□□ -1.94
SMCO1-202ENST00000452776 MT1BP07438 61 aa2.93□□□□□ -1.94
SMCO1-202ENST00000452776 MT3P25713 68 aa2.93□□□□□ -1.94
SMCO1-202ENST00000452776 KRTAP19-5Q3LI72 72 aa2.93□□□□□ -1.94
SMCO1-202ENST00000452776 MT2AP02795 61 aa2.92□□□□□ -1.94
SMCO1-202ENST00000452776 MT1FP04733 61 aa2.9□□□□□ -1.95
SMCO1-202ENST00000452776 KRTAP9-6A8MVA2 160 aa2.89□□□□□ -1.95
SMCO1-202ENST00000452776 SYNE2Q8WXH0 6885 aaKnown RBP2.87□□□□□ -1.95
SMCO1-202ENST00000452776 HMCN1Q96RW7 5635 aa2.86□□□□□ -1.95
SMCO1-202ENST00000452776 MT1HP80294 61 aa2.84□□□□□ -1.95
SMCO1-202ENST00000452776 KRTAP5-2Q701N4 177 aa2.84□□□□□ -1.95
SMCO1-202ENST00000452776 USH2AO75445 5202 aa2.83□□□□□ -1.96
SMCO1-202ENST00000452776 NEBP20929 6669 aa2.83□□□□□ -1.96
SMCO1-202ENST00000452776 FCGBPQ9Y6R7 5405 aaPredicted RBP2.83□□□□□ -1.96
SMCO1-202ENST00000452776 KRTAP12-4P60329 112 aa2.82□□□□□ -1.96
SMCO1-202ENST00000452776 KRTAP4-3Q9BYR4 195 aa2.82□□□□□ -1.96
SMCO1-202ENST00000452776 MACF1Q9UPN3 7388 aaKnown RBP2.79□□□□□ -1.96
SMCO1-202ENST00000452776 OBSCNQ5VST9 7968 aa2.79□□□□□ -1.96
SMCO1-202ENST00000452776 KRTAP20-1Q3LI63 56 aa2.72□□□□□ -1.97
SMCO1-202ENST00000452776 MT1EP04732 61 aa2.72□□□□□ -1.97
SMCO1-202ENST00000452776 LCE1FQ5T754 118 aa2.72□□□□□ -1.97
SMCO1-202ENST00000452776 GPR98Q8WXG9 6306 aa2.71□□□□□ -1.97
SMCO1-202ENST00000452776 KRTAP6-3Q3LI67 103 aa2.68□□□□□ -1.98
SMCO1-202ENST00000452776 MT1LQ93083 61 aa2.68□□□□□ -1.98
SMCO1-202ENST00000452776 KRTAP19-7Q3SYF9 63 aa2.68□□□□□ -1.98
SMCO1-202ENST00000452776 MUC12Q9UKN1 5478 aa2.62□□□□□ -1.99
SMCO1-202ENST00000452776 MT1AP04731 61 aa2.62□□□□□ -1.99
SMCO1-202ENST00000452776 KMT2DO14686 5537 aa2.58□□□□□ -2
SMCO1-202ENST00000452776 LCE3EQ5T5B0 92 aa2.52□□□□□ -2.01
SMCO1-202ENST00000452776 PRM1P04553 51 aa2.51□□□□□ -2.01
SMCO1-202ENST00000452776 LCE3DQ9BYE3 92 aa2.5□□□□□ -2.01
SMCO1-202ENST00000452776 MDN1Q9NU22 5596 aa2.49□□□□□ -2.01
SMCO1-202ENST00000452776 MT1GP13640 62 aa2.47□□□□□ -2.01
SMCO1-202ENST00000452776 KRTAP5-8O75690 187 aa2.45□□□□□ -2.02
SMCO1-202ENST00000452776 KRTAP19-6Q3LI70 58 aa2.45□□□□□ -2.02
SMCO1-202ENST00000452776 KRTAP5-5Q701N2 237 aaPredicted RBP2.43□□□□□ -2.02
SMCO1-202ENST00000452776 MT1MQ8N339 61 aa2.4□□□□□ -2.02
SMCO1-202ENST00000452776 KRTAP19-3Q7Z4W3 81 aa2.38□□□□□ -2.03
SMCO1-202ENST00000452776 SPRR2FQ96RM1 72 aa2.33□□□□□ -2.04
SMCO1-202ENST00000452776 KRTAP6-2Q3LI66 62 aa2.29□□□□□ -2.04
SMCO1-202ENST00000452776 AHNAK2Q8IVF2 5795 aa2.27□□□□□ -2.05
SMCO1-202ENST00000452776 SYNE1Q8NF91 8797 aaKnown RBP2.26□□□□□ -2.05
SMCO1-202ENST00000452776 SPRR2AP35326 72 aa2.24□□□□□ -2.05
SMCO1-202ENST00000452776 SPRR2EP22531 72 aa2.22□□□□□ -2.05
SMCO1-202ENST00000452776 SPRR2BP35325 72 aa2.22□□□□□ -2.05
SMCO1-202ENST00000452776 KRTAP6-1Q3LI64 71 aa2.22□□□□□ -2.05
SMCO1-202ENST00000452776 DSTQ03001 7570 aaKnown RBP2.19□□□□□ -2.06
SMCO1-202ENST00000452776 KRTAP5-10Q6L8G5 202 aa2.17□□□□□ -2.06
SMCO1-202ENST00000452776 SPRR2DP22532 72 aa2.16□□□□□ -2.06
SMCO1-202ENST00000452776 KRTAP5-7Q6L8G8 165 aa2.16□□□□□ -2.06
SMCO1-202ENST00000452776 LCE1CQ5T751 118 aa2.1□□□□□ -2.07
SMCO1-202ENST00000452776 LCE1BQ5T7P3 118 aa2.1□□□□□ -2.07
SMCO1-202ENST00000452776 AHNAKQ09666 5890 aaKnown RBP2.07□□□□□ -2.08
SMCO1-202ENST00000452776 MUC5BQ9HC84 5762 aaPredicted RBP2□□□□□ -2.09
SMCO1-202ENST00000452776 MUC5ACP98088 5654 aa1.93□□□□□ -2.1
SMCO1-202ENST00000452776 MT4P47944 62 aa1.93□□□□□ -2.1
SMCO1-202ENST00000452776 MUC19Q7Z5P9 8384 aa1.77□□□□□ -2.13
SMCO1-202ENST00000452776 KRTAP21-1Q3LI58 79 aa1.7□□□□□ -2.14
SMCO1-202ENST00000452776 KRTAP20-2Q3LI61 65 aa1.69□□□□□ -2.14
SMCO1-202ENST00000452776 KRTAP21-2Q3LI59 83 aa1.53□□□□□ -2.16
SMCO1-202ENST00000452776 PHGR1C9JFL3 82 aa1.28□□□□□ -2.2
SMCO1-202ENST00000452776 MUC16Q8WXI7 14507 aa0.8□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 61.7 ms