RNA–Protein interactions for RNA: ENST00000449234.1

RFX3-208, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 633 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-208	ENST00000449234	PRO2289	Q9P1D8	64 aa		4.56	□□□□□ -1.68
RFX3-208	ENST00000449234	FAT4	Q6V0I7	4981 aa		4.51	□□□□□ -1.69
RFX3-208	ENST00000449234	KRTAP10-12	P60413	245 aa		4.51	□□□□□ -1.69
RFX3-208	ENST00000449234	KRTAP12-3	P60328	96 aa		4.49	□□□□□ -1.69
RFX3-208	ENST00000449234	KRTAP10-7	P60409	375 aa	Predicted RBP	4.39	□□□□□ -1.71
RFX3-208	ENST00000449234	MT3	P25713	68 aa		4.38	□□□□□ -1.71
RFX3-208	ENST00000449234	UBR4	Q5T4S7	5183 aa		4.38	□□□□□ -1.71
RFX3-208	ENST00000449234	KRTAP5-11	Q6L8G4	156 aa		4.31	□□□□□ -1.72
RFX3-208	ENST00000449234	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	4.29	□□□□□ -1.72
RFX3-208	ENST00000449234	INE1	O15225	51 aa		4.28	□□□□□ -1.72
RFX3-208	ENST00000449234	LCE1E	Q5T753	118 aa		4.28	□□□□□ -1.72
RFX3-208	ENST00000449234	KRTAP19-5	Q3LI72	72 aa		4.24	□□□□□ -1.73
RFX3-208	ENST00000449234	LCE3C	Q5T5A8	94 aa		4.24	□□□□□ -1.73
RFX3-208	ENST00000449234	KRTAP19-7	Q3SYF9	63 aa		4.09	□□□□□ -1.75
RFX3-208	ENST00000449234	KRTAP19-6	Q3LI70	58 aa		4.03	□□□□□ -1.76
RFX3-208	ENST00000449234	MT1E	P04732	61 aa		3.99	□□□□□ -1.77
RFX3-208	ENST00000449234	MT1L	Q93083	61 aa		3.99	□□□□□ -1.77
RFX3-208	ENST00000449234	USH2A	O75445	5202 aa		3.97	□□□□□ -1.77
RFX3-208	ENST00000449234	KRTAP2-3	P0C7H8	128 aa		3.97	□□□□□ -1.77
RFX3-208	ENST00000449234	KRTAP2-4	Q9BYR9	128 aa		3.97	□□□□□ -1.77
RFX3-208	ENST00000449234	KRTAP2-1	Q9BYU5	128 aa		3.97	□□□□□ -1.77
RFX3-208	ENST00000449234	KRTAP9-6	A8MVA2	160 aa		3.95	□□□□□ -1.78
RFX3-208	ENST00000449234	LCE1F	Q5T754	118 aa		3.86	□□□□□ -1.79
RFX3-208	ENST00000449234	SSPO	A2VEC9	5147 aa		3.85	□□□□□ -1.79
RFX3-208	ENST00000449234	MT1G	P13640	62 aa		3.83	□□□□□ -1.8
RFX3-208	ENST00000449234	KRTAP19-3	Q7Z4W3	81 aa		3.76	□□□□□ -1.81
RFX3-208	ENST00000449234	MT1M	Q8N339	61 aa		3.74	□□□□□ -1.81
RFX3-208	ENST00000449234	KMT2D	O14686	5537 aa		3.71	□□□□□ -1.82
RFX3-208	ENST00000449234	KRTAP5-1	Q6L8H4	278 aa		3.7	□□□□□ -1.82
RFX3-208	ENST00000449234	KRTAP4-3	Q9BYR4	195 aa		3.59	□□□□□ -1.83
RFX3-208	ENST00000449234	KRTAP5-4	Q6L8H1	288 aa		3.57	□□□□□ -1.84
RFX3-208	ENST00000449234	SPRR2F	Q96RM1	72 aa		3.54	□□□□□ -1.84
RFX3-208	ENST00000449234	KRTAP4-4	Q9BYR3	166 aa		3.52	□□□□□ -1.85
RFX3-208	ENST00000449234	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	3.52	□□□□□ -1.85
RFX3-208	ENST00000449234	MT1A	P04731	61 aa		3.48	□□□□□ -1.85
RFX3-208	ENST00000449234	KRTAP5-9	P26371	169 aa		3.46	□□□□□ -1.86
RFX3-208	ENST00000449234	KRTAP12-4	P60329	112 aa		3.42	□□□□□ -1.86
RFX3-208	ENST00000449234	CRCT1	Q9UGL9	99 aa		3.41	□□□□□ -1.86
RFX3-208	ENST00000449234	MUC12	Q9UKN1	5478 aa		3.34	□□□□□ -1.87
RFX3-208	ENST00000449234	KRTAP6-1	Q3LI64	71 aa		3.33	□□□□□ -1.88
RFX3-208	ENST00000449234	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.33	□□□□□ -1.88
RFX3-208	ENST00000449234	FSIP2	Q5CZC0	6907 aa		3.28	□□□□□ -1.88
RFX3-208	ENST00000449234	LCE3D	Q9BYE3	92 aa		3.27	□□□□□ -1.89
RFX3-208	ENST00000449234	LCE3E	Q5T5B0	92 aa		3.26	□□□□□ -1.89
RFX3-208	ENST00000449234	SPRR2E	P22531	72 aa		3.25	□□□□□ -1.89
RFX3-208	ENST00000449234	SPRR2B	P35325	72 aa		3.25	□□□□□ -1.89
RFX3-208	ENST00000449234	SPRR2A	P35326	72 aa		3.25	□□□□□ -1.89
RFX3-208	ENST00000449234	KRTAP6-3	Q3LI67	103 aa		3.18	□□□□□ -1.9
RFX3-208	ENST00000449234	MACF1	Q9UPN3	7388 aa	Known RBP	3.17	□□□□□ -1.9
RFX3-208	ENST00000449234	SYNE1	Q8NF91	8797 aa	Known RBP	3.16	□□□□□ -1.9
RFX3-208	ENST00000449234	OBSCN	Q5VST9	7968 aa		3.15	□□□□□ -1.9
RFX3-208	ENST00000449234	SPRR2D	P22532	72 aa		3.13	□□□□□ -1.91
RFX3-208	ENST00000449234	DST	Q03001	7570 aa	Known RBP	3.06	□□□□□ -1.92
RFX3-208	ENST00000449234	MDN1	Q9NU22	5596 aa		3.03	□□□□□ -1.92
RFX3-208	ENST00000449234	SYNE2	Q8WXH0	6885 aa	Known RBP	2.98	□□□□□ -1.93
RFX3-208	ENST00000449234	PRM1	P04553	51 aa		2.98	□□□□□ -1.93
RFX3-208	ENST00000449234	KRTAP6-2	Q3LI66	62 aa		2.98	□□□□□ -1.93
RFX3-208	ENST00000449234	KRTAP5-2	Q701N4	177 aa		2.92	□□□□□ -1.94
RFX3-208	ENST00000449234	LCE1C	Q5T751	118 aa		2.81	□□□□□ -1.96
RFX3-208	ENST00000449234	LCE1B	Q5T7P3	118 aa		2.81	□□□□□ -1.96
RFX3-208	ENST00000449234	KRTAP20-2	Q3LI61	65 aa		2.74	□□□□□ -1.97
RFX3-208	ENST00000449234	NEB	P20929	6669 aa		2.71	□□□□□ -1.97
RFX3-208	ENST00000449234	KRTAP20-1	Q3LI63	56 aa		2.67	□□□□□ -1.98
RFX3-208	ENST00000449234	MT4	P47944	62 aa		2.64	□□□□□ -1.99
RFX3-208	ENST00000449234	HMCN1	Q96RW7	5635 aa		2.45	□□□□□ -2.02
RFX3-208	ENST00000449234	GPR98	Q8WXG9	6306 aa		2.44	□□□□□ -2.02
RFX3-208	ENST00000449234	KRTAP5-8	O75690	187 aa		2.41	□□□□□ -2.02
RFX3-208	ENST00000449234	KRTAP5-10	Q6L8G5	202 aa		2.41	□□□□□ -2.02
RFX3-208	ENST00000449234	MUC5AC	P98088	5654 aa		2.4	□□□□□ -2.02
RFX3-208	ENST00000449234	KRTAP5-7	Q6L8G8	165 aa		2.32	□□□□□ -2.04
RFX3-208	ENST00000449234	MUC19	Q7Z5P9	8384 aa		2.22	□□□□□ -2.05
RFX3-208	ENST00000449234	KRTAP21-2	Q3LI59	83 aa		2.19	□□□□□ -2.06
RFX3-208	ENST00000449234	AHNAK2	Q8IVF2	5795 aa		2.06	□□□□□ -2.08
RFX3-208	ENST00000449234	KRTAP21-1	Q3LI58	79 aa		1.97	□□□□□ -2.09
RFX3-208	ENST00000449234	AHNAK	Q09666	5890 aa	Known RBP	1.9	□□□□□ -2.1
RFX3-208	ENST00000449234	MUC5B	Q9HC84	5762 aa	Predicted RBP	1.87	□□□□□ -2.11
RFX3-208	ENST00000449234	PHGR1	C9JFL3	82 aa		1.76	□□□□□ -2.13
RFX3-208	ENST00000449234	MUC16	Q8WXI7	14507 aa		1.27	□□□□□ -2.21

Retrieved 78 of 20,778 RNA–protein pairs in 46.9 ms