RNA–Protein interactions for RNA: ENST00000448940.5

CDC42BPA-209, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best)

Gene CDC42BPA, Length 7,355 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-209ENST00000448940 TNXBP22105 4242 aa2.13□□□□□ -2.07
CDC42BPA-209ENST00000448940 KRTAP2-2Q9BYT5 123 aa2.12□□□□□ -2.07
CDC42BPA-209ENST00000448940 KRTAP2-1Q9BYU5 128 aa2.12□□□□□ -2.07
CDC42BPA-209ENST00000448940 MUC2Q02817 5179 aa2.11□□□□□ -2.07
CDC42BPA-209ENST00000448940 SYNE1Q8NF91 8797 aaKnown RBP2.1□□□□□ -2.07
CDC42BPA-209ENST00000448940 KRTAP19-5Q3LI72 72 aa2.1□□□□□ -2.07
CDC42BPA-209ENST00000448940 MT1XP80297 61 aa2.08□□□□□ -2.08
CDC42BPA-209ENST00000448940 MT1GP13640 62 aa2.07□□□□□ -2.08
CDC42BPA-209ENST00000448940 LPAP08519 4548 aa2.07□□□□□ -2.08
CDC42BPA-209ENST00000448940 LCE4AQ5TA78 99 aa2.06□□□□□ -2.08
CDC42BPA-209ENST00000448940 MACF1Q9UPN3 7388 aaKnown RBP2.06□□□□□ -2.08
CDC42BPA-209ENST00000448940 MUC17Q685J3 4493 aa2.04□□□□□ -2.08
CDC42BPA-209ENST00000448940 KRTAP4-8A0A0G2JLE6 195 aa2.03□□□□□ -2.08
CDC42BPA-209ENST00000448940 KRTAP4-9Q9BYQ8 210 aa2.03□□□□□ -2.08
CDC42BPA-209ENST00000448940 KRTAP4-8Q9BYQ9 185 aa2.03□□□□□ -2.08
CDC42BPA-209ENST00000448940 GPR98Q8WXG9 6306 aa2.03□□□□□ -2.08
CDC42BPA-209ENST00000448940 KRTAP19-3Q7Z4W3 81 aa2.01□□□□□ -2.09
CDC42BPA-209ENST00000448940 OBSCNQ5VST9 7968 aa2□□□□□ -2.09
CDC42BPA-209ENST00000448940 USH2AO75445 5202 aa1.99□□□□□ -2.09
CDC42BPA-209ENST00000448940 NEBP20929 6669 aa1.98□□□□□ -2.09
CDC42BPA-209ENST00000448940 KMT2DO14686 5537 aa1.97□□□□□ -2.09
CDC42BPA-209ENST00000448940 LCE1AQ5T7P2 110 aa1.97□□□□□ -2.09
CDC42BPA-209ENST00000448940 FLGP20930 4061 aaPredicted RBP1.96□□□□□ -2.1
CDC42BPA-209ENST00000448940 SSPOA2VEC9 5147 aa1.96□□□□□ -2.1
CDC42BPA-209ENST00000448940 LCE1BQ5T7P3 118 aa1.94□□□□□ -2.1
CDC42BPA-209ENST00000448940 LCE1DQ5T752 114 aa1.93□□□□□ -2.1
CDC42BPA-209ENST00000448940 LCE5AQ5TCM9 118 aa1.93□□□□□ -2.1
CDC42BPA-209ENST00000448940 LCE3CQ5T5A8 94 aa1.93□□□□□ -2.1
CDC42BPA-209ENST00000448940 MT1EP04732 61 aa1.91□□□□□ -2.1
CDC42BPA-209ENST00000448940 KRTAP4-7Q9BYR0 210 aa1.89□□□□□ -2.11
CDC42BPA-209ENST00000448940 KRTAP9-9Q9BYP9 154 aa1.88□□□□□ -2.11
CDC42BPA-209ENST00000448940 MDN1Q9NU22 5596 aa1.87□□□□□ -2.11
CDC42BPA-209ENST00000448940 MT1LQ93083 61 aa1.87□□□□□ -2.11
CDC42BPA-209ENST00000448940 MT1MQ8N339 61 aa1.87□□□□□ -2.11
CDC42BPA-209ENST00000448940 FCGBPQ9Y6R7 5405 aaPredicted RBP1.86□□□□□ -2.11
CDC42BPA-209ENST00000448940 DSTQ03001 7570 aaKnown RBP1.85□□□□□ -2.11
CDC42BPA-209ENST00000448940 LCE1CQ5T751 118 aa1.85□□□□□ -2.11
CDC42BPA-209ENST00000448940 LCE1EQ5T753 118 aa1.85□□□□□ -2.11
CDC42BPA-209ENST00000448940 LCE1FQ5T754 118 aa1.85□□□□□ -2.11
CDC42BPA-209ENST00000448940 LCE3EQ5T5B0 92 aa1.82□□□□□ -2.12
CDC42BPA-209ENST00000448940 LOC100996750A0A140TA64 210 aa1.8□□□□□ -2.12
CDC42BPA-209ENST00000448940 KRTAP5-9P26371 169 aa1.79□□□□□ -2.12
CDC42BPA-209ENST00000448940 LCE3DQ9BYE3 92 aa1.78□□□□□ -2.12
CDC42BPA-209ENST00000448940 KRTAP19-7Q3SYF9 63 aa1.77□□□□□ -2.13
CDC42BPA-209ENST00000448940 KRTAP9-4Q9BYQ2 154 aa1.74□□□□□ -2.13
CDC42BPA-209ENST00000448940 KRTAP4-3Q9BYR4 195 aa1.73□□□□□ -2.13
CDC42BPA-209ENST00000448940 MT1AP04731 61 aa1.7□□□□□ -2.14
CDC42BPA-209ENST00000448940 PRM1P04553 51 aa1.65□□□□□ -2.15
CDC42BPA-209ENST00000448940 AHNAK2Q8IVF2 5795 aa1.61□□□□□ -2.15
CDC42BPA-209ENST00000448940 MUC12Q9UKN1 5478 aa1.61□□□□□ -2.15
CDC42BPA-209ENST00000448940 KRTAP6-2Q3LI66 62 aa1.6□□□□□ -2.15
CDC42BPA-209ENST00000448940 MUC5BQ9HC84 5762 aaPredicted RBP1.6□□□□□ -2.15
CDC42BPA-209ENST00000448940 KRTAP4-2Q9BYR5 136 aa1.56□□□□□ -2.16
CDC42BPA-209ENST00000448940 KRTAP4-6Q9BYQ5 205 aa1.56□□□□□ -2.16
CDC42BPA-209ENST00000448940 KRTAP6-1Q3LI64 71 aa1.55□□□□□ -2.16
CDC42BPA-209ENST00000448940 MUC19Q7Z5P9 8384 aa1.53□□□□□ -2.16
CDC42BPA-209ENST00000448940 KRTAP20-2Q3LI61 65 aa1.53□□□□□ -2.17
CDC42BPA-209ENST00000448940 HMCN1Q96RW7 5635 aa1.53□□□□□ -2.17
CDC42BPA-209ENST00000448940 KRTAP5-4Q6L8H1 288 aa1.47□□□□□ -2.17
CDC42BPA-209ENST00000448940 KRTAP5-3Q6L8H2 238 aa1.47□□□□□ -2.17
CDC42BPA-209ENST00000448940 KRTAP4-12Q9BQ66 201 aa1.46□□□□□ -2.18
CDC42BPA-209ENST00000448940 KRTAP4-11Q9BYQ6 195 aa1.46□□□□□ -2.18
CDC42BPA-209ENST00000448940 AHNAKQ09666 5890 aaKnown RBP1.39□□□□□ -2.19
CDC42BPA-209ENST00000448940 KRTAP9-6A8MVA2 160 aa1.37□□□□□ -2.19
CDC42BPA-209ENST00000448940 MUC5ACP98088 5654 aa1.34□□□□□ -2.2
CDC42BPA-209ENST00000448940 PHGR1C9JFL3 82 aa1.34□□□□□ -2.2
CDC42BPA-209ENST00000448940 KRTAP5-7Q6L8G8 165 aa1.32□□□□□ -2.2
CDC42BPA-209ENST00000448940 KRTAP5-5Q701N2 237 aaPredicted RBP1.3□□□□□ -2.2
CDC42BPA-209ENST00000448940 KRTAP5-8O75690 187 aa1.27□□□□□ -2.21
CDC42BPA-209ENST00000448940 KRTAP4-4Q9BYR3 166 aa1.27□□□□□ -2.21
CDC42BPA-209ENST00000448940 KRTAP5-10Q6L8G5 202 aa1.21□□□□□ -2.22
CDC42BPA-209ENST00000448940 KRTAP5-2Q701N4 177 aa1.14□□□□□ -2.23
CDC42BPA-209ENST00000448940 KRTAP5-1Q6L8H4 278 aa1.03□□□□□ -2.24
CDC42BPA-209ENST00000448940 KRTAP21-1Q3LI58 79 aa1.01□□□□□ -2.25
CDC42BPA-209ENST00000448940 KRTAP5-11Q6L8G4 156 aa0.99□□□□□ -2.25
CDC42BPA-209ENST00000448940 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.95□□□□□ -2.26
CDC42BPA-209ENST00000448940 KRTAP21-2Q3LI59 83 aa0.87□□□□□ -2.27
CDC42BPA-209ENST00000448940 MUC16Q8WXI7 14507 aa0.71□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 100.9 ms