RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 KRTAP4-8Q9BYQ9 185 aa6.76□□□□□ -1.33
HMGA1-205ENST00000447654 KRTAP19-4Q3LI73 84 aa6.76□□□□□ -1.33
HMGA1-205ENST00000447654 MACF1Q9UPN3 7388 aaKnown RBP6.72□□□□□ -1.33
HMGA1-205ENST00000447654 KRTAP19-6Q3LI70 58 aa6.69□□□□□ -1.34
HMGA1-205ENST00000447654 SYNE2Q8WXH0 6885 aaKnown RBP6.67□□□□□ -1.34
HMGA1-205ENST00000447654 KRTAP6-3Q3LI67 103 aa6.64□□□□□ -1.35
HMGA1-205ENST00000447654 KRTAP19-7Q3SYF9 63 aa6.52□□□□□ -1.36
HMGA1-205ENST00000447654 NEBP20929 6669 aa6.44□□□□□ -1.38
HMGA1-205ENST00000447654 KRTAP4-7Q9BYR0 210 aa6.35□□□□□ -1.39
HMGA1-205ENST00000447654 MT1EP04732 61 aa6.33□□□□□ -1.4
HMGA1-205ENST00000447654 KRTAP20-1Q3LI63 56 aa6.33□□□□□ -1.4
HMGA1-205ENST00000447654 KRTAP12-4P60329 112 aa6.31□□□□□ -1.4
HMGA1-205ENST00000447654 MT1LQ93083 61 aa6.28□□□□□ -1.4
HMGA1-205ENST00000447654 MUC12Q9UKN1 5478 aa6.27□□□□□ -1.41
HMGA1-205ENST00000447654 KRTAP5-9P26371 169 aa6.16□□□□□ -1.42
HMGA1-205ENST00000447654 KRTAP4-3Q9BYR4 195 aa6.04□□□□□ -1.44
HMGA1-205ENST00000447654 MDN1Q9NU22 5596 aa6.03□□□□□ -1.44
HMGA1-205ENST00000447654 KRTAP19-3Q7Z4W3 81 aa5.96□□□□□ -1.46
HMGA1-205ENST00000447654 LOC100996750A0A140TA64 210 aa5.94□□□□□ -1.46
HMGA1-205ENST00000447654 MT1MQ8N339 61 aa5.93□□□□□ -1.46
HMGA1-205ENST00000447654 DSTQ03001 7570 aaKnown RBP5.9□□□□□ -1.46
HMGA1-205ENST00000447654 SPRR2FQ96RM1 72 aa5.9□□□□□ -1.46
HMGA1-205ENST00000447654 MT1GP13640 62 aa5.89□□□□□ -1.47
HMGA1-205ENST00000447654 SPRR2EP22531 72 aa5.87□□□□□ -1.47
HMGA1-205ENST00000447654 SPRR2BP35325 72 aa5.87□□□□□ -1.47
HMGA1-205ENST00000447654 SPRR2AP35326 72 aa5.87□□□□□ -1.47
HMGA1-205ENST00000447654 KRTAP2-2Q9BYT5 123 aa5.84□□□□□ -1.47
HMGA1-205ENST00000447654 LCE5AQ5TCM9 118 aa5.82□□□□□ -1.48
HMGA1-205ENST00000447654 MT1AP04731 61 aa5.81□□□□□ -1.48
HMGA1-205ENST00000447654 LCE1AQ5T7P2 110 aa5.73□□□□□ -1.49
HMGA1-205ENST00000447654 SPRR2DP22532 72 aa5.69□□□□□ -1.5
HMGA1-205ENST00000447654 PRM1P04553 51 aa5.66□□□□□ -1.5
HMGA1-205ENST00000447654 LCE3EQ5T5B0 92 aa5.62□□□□□ -1.51
HMGA1-205ENST00000447654 KRTAP5-5Q701N2 237 aaPredicted RBP5.6□□□□□ -1.51
HMGA1-205ENST00000447654 LCE3DQ9BYE3 92 aa5.59□□□□□ -1.52
HMGA1-205ENST00000447654 LCE3BQ5TA77 95 aa5.56□□□□□ -1.52
HMGA1-205ENST00000447654 GPR98Q8WXG9 6306 aa5.51□□□□□ -1.53
HMGA1-205ENST00000447654 KRTAP4-9Q9BYQ8 210 aa5.47□□□□□ -1.53
HMGA1-205ENST00000447654 KRTAP6-1Q3LI64 71 aa5.35□□□□□ -1.55
HMGA1-205ENST00000447654 SYNE1Q8NF91 8797 aaKnown RBP5.34□□□□□ -1.55
HMGA1-205ENST00000447654 KRTAP6-2Q3LI66 62 aa5.24□□□□□ -1.57
HMGA1-205ENST00000447654 LCE1DQ5T752 114 aa5.09□□□□□ -1.59
HMGA1-205ENST00000447654 LCE4AQ5TA78 99 aa5.05□□□□□ -1.6
HMGA1-205ENST00000447654 HMCN1Q96RW7 5635 aa5.03□□□□□ -1.6
HMGA1-205ENST00000447654 AHNAK2Q8IVF2 5795 aa5.02□□□□□ -1.61
HMGA1-205ENST00000447654 KRTAP9-4Q9BYQ2 154 aa4.98□□□□□ -1.61
HMGA1-205ENST00000447654 MT4P47944 62 aa4.96□□□□□ -1.62
HMGA1-205ENST00000447654 KRTAP5-10Q6L8G5 202 aa4.95□□□□□ -1.62
HMGA1-205ENST00000447654 LCE1EQ5T753 118 aa4.92□□□□□ -1.62
HMGA1-205ENST00000447654 OBSCNQ5VST9 7968 aa4.85□□□□□ -1.63
HMGA1-205ENST00000447654 KRTAP5-4Q6L8H1 288 aa4.85□□□□□ -1.63
HMGA1-205ENST00000447654 KRTAP5-7Q6L8G8 165 aa4.84□□□□□ -1.63
HMGA1-205ENST00000447654 KRTAP4-6Q9BYQ5 205 aa4.77□□□□□ -1.65
HMGA1-205ENST00000447654 KRTAP5-3Q6L8H2 238 aa4.73□□□□□ -1.65
HMGA1-205ENST00000447654 MT3P25713 68 aa4.7□□□□□ -1.66
HMGA1-205ENST00000447654 KRTAP9-9Q9BYP9 154 aa4.7□□□□□ -1.66
HMGA1-205ENST00000447654 LCE1FQ5T754 118 aa4.66□□□□□ -1.66
HMGA1-205ENST00000447654 KRTAP20-2Q3LI61 65 aa4.59□□□□□ -1.67
HMGA1-205ENST00000447654 KRTAP5-2Q701N4 177 aa4.43□□□□□ -1.7
HMGA1-205ENST00000447654 AHNAKQ09666 5890 aaKnown RBP4.29□□□□□ -1.72
HMGA1-205ENST00000447654 KRTAP4-11Q9BYQ6 195 aa4.28□□□□□ -1.72
HMGA1-205ENST00000447654 MUC5ACP98088 5654 aa4.2□□□□□ -1.74
HMGA1-205ENST00000447654 MUC5BQ9HC84 5762 aaPredicted RBP4.15□□□□□ -1.75
HMGA1-205ENST00000447654 KRTAP5-8O75690 187 aa4.14□□□□□ -1.75
HMGA1-205ENST00000447654 KRTAP4-12Q9BQ66 201 aa3.97□□□□□ -1.77
HMGA1-205ENST00000447654 LCE1BQ5T7P3 118 aa3.87□□□□□ -1.79
HMGA1-205ENST00000447654 KRTAP5-1Q6L8H4 278 aa3.86□□□□□ -1.79
HMGA1-205ENST00000447654 KRTAP4-2Q9BYR5 136 aa3.79□□□□□ -1.8
HMGA1-205ENST00000447654 KRTAP21-1Q3LI58 79 aa3.77□□□□□ -1.81
HMGA1-205ENST00000447654 LCE1CQ5T751 118 aa3.72□□□□□ -1.81
HMGA1-205ENST00000447654 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.49□□□□□ -1.85
HMGA1-205ENST00000447654 KRTAP21-2Q3LI59 83 aa3.48□□□□□ -1.85
HMGA1-205ENST00000447654 KRTAP5-11Q6L8G4 156 aa3.22□□□□□ -1.89
HMGA1-205ENST00000447654 KRTAP4-4Q9BYR3 166 aa3.2□□□□□ -1.9
HMGA1-205ENST00000447654 MUC19Q7Z5P9 8384 aa3.05□□□□□ -1.92
HMGA1-205ENST00000447654 PHGR1C9JFL3 82 aa2.9□□□□□ -1.95
HMGA1-205ENST00000447654 MUC16Q8WXI7 14507 aa1.82□□□□□ -2.12
Retrieved 77 of 20,778 RNA–protein pairs in 6.2 ms