RNA–Protein interactions for RNA: ENST00000446852.5

SMC6-206, Transcript of structural maintenance of chromosomes 6, humanhuman

TSL 1 (best)

Gene SMC6, Length 2,460 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC6-206ENST00000446852 KRTAP9-6A8MVA2 160 aa6.02□□□□□ -1.45
SMC6-206ENST00000446852 CRCT1Q9UGL9 99 aa5.94□□□□□ -1.46
SMC6-206ENST00000446852 KRTAP19-3Q7Z4W3 81 aa5.92□□□□□ -1.46
SMC6-206ENST00000446852 SPRR2FQ96RM1 72 aa5.91□□□□□ -1.46
SMC6-206ENST00000446852 SYNE2Q8WXH0 6885 aaKnown RBP5.87□□□□□ -1.47
SMC6-206ENST00000446852 MT1GP13640 62 aa5.86□□□□□ -1.47
SMC6-206ENST00000446852 MT1MQ8N339 61 aa5.86□□□□□ -1.47
SMC6-206ENST00000446852 KRTAP4-3Q9BYR4 195 aa5.85□□□□□ -1.47
SMC6-206ENST00000446852 A0A0A0MQY5 61 aa5.8□□□□□ -1.48
SMC6-206ENST00000446852 LCE5AQ5TCM9 118 aa5.79□□□□□ -1.48
SMC6-206ENST00000446852 LOC100996750A0A140TA64 210 aa5.72□□□□□ -1.49
SMC6-206ENST00000446852 MDN1Q9NU22 5596 aa5.71□□□□□ -1.5
SMC6-206ENST00000446852 KRTAP5-9P26371 169 aa5.7□□□□□ -1.5
SMC6-206ENST00000446852 DSTQ03001 7570 aaKnown RBP5.67□□□□□ -1.5
SMC6-206ENST00000446852 KRTAP2-3P0C7H8 128 aa5.63□□□□□ -1.51
SMC6-206ENST00000446852 KRTAP2-4Q9BYR9 128 aa5.63□□□□□ -1.51
SMC6-206ENST00000446852 KRTAP2-1Q9BYU5 128 aa5.63□□□□□ -1.51
SMC6-206ENST00000446852 LCE1AQ5T7P2 110 aa5.6□□□□□ -1.51
SMC6-206ENST00000446852 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.5□□□□□ -1.53
SMC6-206ENST00000446852 SPRR2EP22531 72 aa5.5□□□□□ -1.53
SMC6-206ENST00000446852 SPRR2BP35325 72 aa5.5□□□□□ -1.53
SMC6-206ENST00000446852 SPRR2AP35326 72 aa5.5□□□□□ -1.53
SMC6-206ENST00000446852 KRTAP9-6A0A140TA67 174 aa5.48□□□□□ -1.53
SMC6-206ENST00000446852 KRTAP6-3Q3LI67 103 aa5.42□□□□□ -1.54
SMC6-206ENST00000446852 INE1O15225 51 aa5.36□□□□□ -1.55
SMC6-206ENST00000446852 SPRR2DP22532 72 aa5.28□□□□□ -1.56
SMC6-206ENST00000446852 KRTAP5-5Q701N2 237 aaPredicted RBP5.25□□□□□ -1.57
SMC6-206ENST00000446852 KRTAP6-1Q3LI64 71 aa5.22□□□□□ -1.57
SMC6-206ENST00000446852 MT1AP04731 61 aa5.2□□□□□ -1.58
SMC6-206ENST00000446852 LCE3BQ5TA77 95 aa5.16□□□□□ -1.58
SMC6-206ENST00000446852 NEBP20929 6669 aa5.12□□□□□ -1.59
SMC6-206ENST00000446852 SYNE1Q8NF91 8797 aaKnown RBP5.08□□□□□ -1.6
SMC6-206ENST00000446852 KRTAP9-7A8MTY7 169 aa5.08□□□□□ -1.6
SMC6-206ENST00000446852 KRTAP4-9Q9BYQ8 210 aa4.98□□□□□ -1.61
SMC6-206ENST00000446852 KRTAP9-4Q9BYQ2 154 aa4.91□□□□□ -1.62
SMC6-206ENST00000446852 KRTAP12-4P60329 112 aa4.84□□□□□ -1.63
SMC6-206ENST00000446852 KRTAP5-4Q6L8H1 288 aa4.84□□□□□ -1.64
SMC6-206ENST00000446852 KRTAP6-2Q3LI66 62 aa4.75□□□□□ -1.65
SMC6-206ENST00000446852 LCE3DQ9BYE3 92 aa4.74□□□□□ -1.65
SMC6-206ENST00000446852 MT3P25713 68 aa4.67□□□□□ -1.66
SMC6-206ENST00000446852 KRTAP4-6Q9BYQ5 205 aa4.65□□□□□ -1.66
SMC6-206ENST00000446852 MT4P47944 62 aa4.63□□□□□ -1.67
SMC6-206ENST00000446852 LCE3EQ5T5B0 92 aa4.63□□□□□ -1.67
SMC6-206ENST00000446852 LCE4AQ5TA78 99 aa4.63□□□□□ -1.67
SMC6-206ENST00000446852 KRTAP2-2Q9BYT5 123 aa4.59□□□□□ -1.67
SMC6-206ENST00000446852 HMCN1Q96RW7 5635 aa4.54□□□□□ -1.68
SMC6-206ENST00000446852 KRTAP20-2Q3LI61 65 aa4.53□□□□□ -1.68
SMC6-206ENST00000446852 OBSCNQ5VST9 7968 aa4.53□□□□□ -1.68
SMC6-206ENST00000446852 KRTAP20-1Q3LI63 56 aa4.5□□□□□ -1.69
SMC6-206ENST00000446852 LCE1DQ5T752 114 aa4.48□□□□□ -1.69
SMC6-206ENST00000446852 KRTAP5-2Q701N4 177 aa4.45□□□□□ -1.7
SMC6-206ENST00000446852 KRTAP5-3Q6L8H2 238 aa4.35□□□□□ -1.71
SMC6-206ENST00000446852 PRM1P04553 51 aa4.23□□□□□ -1.73
SMC6-206ENST00000446852 LCE1EQ5T753 118 aa3.96□□□□□ -1.78
SMC6-206ENST00000446852 MUC5ACP98088 5654 aa3.93□□□□□ -1.78
SMC6-206ENST00000446852 KRTAP4-11Q9BYQ6 195 aa3.84□□□□□ -1.79
SMC6-206ENST00000446852 AHNAK2Q8IVF2 5795 aa3.84□□□□□ -1.79
SMC6-206ENST00000446852 KRTAP5-1Q6L8H4 278 aa3.83□□□□□ -1.8
SMC6-206ENST00000446852 LCE1BQ5T7P3 118 aa3.81□□□□□ -1.8
SMC6-206ENST00000446852 KRTAP5-10Q6L8G5 202 aa3.78□□□□□ -1.8
SMC6-206ENST00000446852 KRTAP4-2Q9BYR5 136 aa3.76□□□□□ -1.81
SMC6-206ENST00000446852 LCE1CQ5T751 118 aa3.72□□□□□ -1.81
SMC6-206ENST00000446852 KRTAP5-8O75690 187 aa3.71□□□□□ -1.82
SMC6-206ENST00000446852 KRTAP5-7Q6L8G8 165 aa3.61□□□□□ -1.83
SMC6-206ENST00000446852 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.5□□□□□ -1.85
SMC6-206ENST00000446852 KRTAP21-2Q3LI59 83 aa3.41□□□□□ -1.86
SMC6-206ENST00000446852 GPR98Q8WXG9 6306 aa3.33□□□□□ -1.88
SMC6-206ENST00000446852 MUC5BQ9HC84 5762 aaPredicted RBP3.28□□□□□ -1.88
SMC6-206ENST00000446852 KRTAP5-11Q6L8G4 156 aa3.26□□□□□ -1.89
SMC6-206ENST00000446852 KRTAP9-9Q9BYP9 154 aa3.21□□□□□ -1.89
SMC6-206ENST00000446852 KRTAP4-12Q9BQ66 201 aa3.16□□□□□ -1.9
SMC6-206ENST00000446852 KRTAP4-4Q9BYR3 166 aa3.07□□□□□ -1.92
SMC6-206ENST00000446852 PHGR1C9JFL3 82 aa2.81□□□□□ -1.96
SMC6-206ENST00000446852 LCE1FQ5T754 118 aa2.79□□□□□ -1.96
SMC6-206ENST00000446852 AHNAKQ09666 5890 aaKnown RBP2.75□□□□□ -1.97
SMC6-206ENST00000446852 MUC19Q7Z5P9 8384 aa2.72□□□□□ -1.97
SMC6-206ENST00000446852 KRTAP21-1Q3LI58 79 aa2.62□□□□□ -1.99
SMC6-206ENST00000446852 MUC16Q8WXI7 14507 aa1.84□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 10.8 ms