RNA–Protein interactions for RNA: ENST00000441438.2

SYNE2-206, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,084 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-206ENST00000441438 FSIP2Q5CZC0 6907 aa3.73□□□□□ -1.81
SYNE2-206ENST00000441438 KMT2DO14686 5537 aa3.73□□□□□ -1.81
SYNE2-206ENST00000441438 KRTAP8-1Q8IUC2 63 aa3.69□□□□□ -1.82
SYNE2-206ENST00000441438 SSPOA2VEC9 5147 aa3.69□□□□□ -1.82
SYNE2-206ENST00000441438 LCE3AQ5TA76 89 aa3.69□□□□□ -1.82
SYNE2-206ENST00000441438 LCE3DQ9BYE3 92 aa3.65□□□□□ -1.82
SYNE2-206ENST00000441438 KRTAP10-5P60370 271 aa3.63□□□□□ -1.83
SYNE2-206ENST00000441438 FCGBPQ9Y6R7 5405 aaPredicted RBP3.63□□□□□ -1.83
SYNE2-206ENST00000441438 MT1BP07438 61 aa3.58□□□□□ -1.84
SYNE2-206ENST00000441438 MT1XP80297 61 aa3.54□□□□□ -1.84
SYNE2-206ENST00000441438 KRTAP12-3P60328 96 aa3.52□□□□□ -1.85
SYNE2-206ENST00000441438 KRTAP5-9P26371 169 aa3.49□□□□□ -1.85
SYNE2-206ENST00000441438 MACF1Q9UPN3 7388 aaKnown RBP3.47□□□□□ -1.85
SYNE2-206ENST00000441438 KRTAP2-3P0C7H8 128 aa3.46□□□□□ -1.86
SYNE2-206ENST00000441438 KRTAP2-4Q9BYR9 128 aa3.46□□□□□ -1.86
SYNE2-206ENST00000441438 KRTAP2-1Q9BYU5 128 aa3.46□□□□□ -1.86
SYNE2-206ENST00000441438 KRTAP4-8A0A0G2JLE6 195 aa3.41□□□□□ -1.86
SYNE2-206ENST00000441438 KRTAP4-8Q9BYQ9 185 aa3.41□□□□□ -1.86
SYNE2-206ENST00000441438 SYNE2Q8WXH0 6885 aaKnown RBP3.37□□□□□ -1.87
SYNE2-206ENST00000441438 KRTAP19-5Q3LI72 72 aa3.35□□□□□ -1.87
SYNE2-206ENST00000441438 DSTQ03001 7570 aaKnown RBP3.33□□□□□ -1.88
SYNE2-206ENST00000441438 NEBP20929 6669 aa3.33□□□□□ -1.88
SYNE2-206ENST00000441438 KRTAP20-1Q3LI63 56 aa3.33□□□□□ -1.88
SYNE2-206ENST00000441438 MUC12Q9UKN1 5478 aa3.28□□□□□ -1.88
SYNE2-206ENST00000441438 KRTAP4-7Q9BYR0 210 aa3.28□□□□□ -1.88
SYNE2-206ENST00000441438 KRTAP9-6A8MVA2 160 aa3.23□□□□□ -1.89
SYNE2-206ENST00000441438 SPRR2FQ96RM1 72 aa3.21□□□□□ -1.9
SYNE2-206ENST00000441438 SPRR2EP22531 72 aa3.19□□□□□ -1.9
SYNE2-206ENST00000441438 SPRR2BP35325 72 aa3.19□□□□□ -1.9
SYNE2-206ENST00000441438 SPRR2AP35326 72 aa3.19□□□□□ -1.9
SYNE2-206ENST00000441438 SYNE1Q8NF91 8797 aaKnown RBP3.16□□□□□ -1.9
SYNE2-206ENST00000441438 KRTAP19-7Q3SYF9 63 aa3.15□□□□□ -1.9
SYNE2-206ENST00000441438 OBSCNQ5VST9 7968 aa3.15□□□□□ -1.91
SYNE2-206ENST00000441438 LOC100996750A0A140TA64 210 aa3.12□□□□□ -1.91
SYNE2-206ENST00000441438 KRTAP4-6Q9BYQ5 205 aa3.12□□□□□ -1.91
SYNE2-206ENST00000441438 PRM1P04553 51 aa3.1□□□□□ -1.91
SYNE2-206ENST00000441438 SPRR2DP22532 72 aa3.1□□□□□ -1.91
SYNE2-206ENST00000441438 KRTAP4-12Q9BQ66 201 aa3.1□□□□□ -1.91
SYNE2-206ENST00000441438 MDN1Q9NU22 5596 aa3.09□□□□□ -1.92
SYNE2-206ENST00000441438 KRTAP4-3Q9BYR4 195 aa3.08□□□□□ -1.92
SYNE2-206ENST00000441438 MT1EP04732 61 aa3.04□□□□□ -1.92
SYNE2-206ENST00000441438 MT1LQ93083 61 aa3.04□□□□□ -1.92
SYNE2-206ENST00000441438 LCE3BQ5TA77 95 aa3.02□□□□□ -1.93
SYNE2-206ENST00000441438 MT1GP13640 62 aa3.02□□□□□ -1.93
SYNE2-206ENST00000441438 KRTAP19-3Q7Z4W3 81 aa2.99□□□□□ -1.93
SYNE2-206ENST00000441438 KRTAP5-4Q6L8H1 288 aa2.91□□□□□ -1.94
SYNE2-206ENST00000441438 MT1MQ8N339 61 aa2.86□□□□□ -1.95
SYNE2-206ENST00000441438 KRTAP5-5Q701N2 237 aaPredicted RBP2.82□□□□□ -1.96
SYNE2-206ENST00000441438 KRTAP4-9Q9BYQ8 210 aa2.79□□□□□ -1.96
SYNE2-206ENST00000441438 MT1AP04731 61 aa2.77□□□□□ -1.97
SYNE2-206ENST00000441438 LCE1CQ5T751 118 aa2.77□□□□□ -1.97
SYNE2-206ENST00000441438 LCE1BQ5T7P3 118 aa2.77□□□□□ -1.97
SYNE2-206ENST00000441438 GPR98Q8WXG9 6306 aa2.69□□□□□ -1.98
SYNE2-206ENST00000441438 KRTAP6-1Q3LI64 71 aa2.65□□□□□ -1.98
SYNE2-206ENST00000441438 MT4P47944 62 aa2.64□□□□□ -1.99
SYNE2-206ENST00000441438 KRTAP5-3Q6L8H2 238 aa2.63□□□□□ -1.99
SYNE2-206ENST00000441438 KRTAP5-10Q6L8G5 202 aa2.61□□□□□ -1.99
SYNE2-206ENST00000441438 KRTAP5-2Q701N4 177 aa2.61□□□□□ -1.99
SYNE2-206ENST00000441438 HMCN1Q96RW7 5635 aa2.58□□□□□ -2
SYNE2-206ENST00000441438 KRTAP5-7Q6L8G8 165 aa2.56□□□□□ -2
SYNE2-206ENST00000441438 AHNAK2Q8IVF2 5795 aa2.55□□□□□ -2
SYNE2-206ENST00000441438 KRTAP20-2Q3LI61 65 aa2.55□□□□□ -2
SYNE2-206ENST00000441438 MUC19Q7Z5P9 8384 aa2.52□□□□□ -2.01
SYNE2-206ENST00000441438 KRTAP6-2Q3LI66 62 aa2.51□□□□□ -2.01
SYNE2-206ENST00000441438 KRTAP5-8O75690 187 aa2.38□□□□□ -2.03
SYNE2-206ENST00000441438 KRTAP4-11Q9BYQ6 195 aa2.36□□□□□ -2.03
SYNE2-206ENST00000441438 KRTAP4-2Q9BYR5 136 aa2.26□□□□□ -2.05
SYNE2-206ENST00000441438 KRTAP21-1Q3LI58 79 aa2.23□□□□□ -2.05
SYNE2-206ENST00000441438 AHNAKQ09666 5890 aaKnown RBP2.16□□□□□ -2.06
SYNE2-206ENST00000441438 KRTAP5-1Q6L8H4 278 aa2.16□□□□□ -2.06
SYNE2-206ENST00000441438 MUC5BQ9HC84 5762 aaPredicted RBP2.15□□□□□ -2.06
SYNE2-206ENST00000441438 MUC5ACP98088 5654 aa2.11□□□□□ -2.07
SYNE2-206ENST00000441438 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.11□□□□□ -2.07
SYNE2-206ENST00000441438 KRTAP5-11Q6L8G4 156 aa1.92□□□□□ -2.1
SYNE2-206ENST00000441438 KRTAP4-4Q9BYR3 166 aa1.75□□□□□ -2.13
SYNE2-206ENST00000441438 KRTAP21-2Q3LI59 83 aa1.67□□□□□ -2.14
SYNE2-206ENST00000441438 PHGR1C9JFL3 82 aa1.57□□□□□ -2.16
SYNE2-206ENST00000441438 MUC16Q8WXI7 14507 aa1.15□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 90.6 ms