RNA–Protein interactions for RNA: ENST00000434472.6

CD44-210, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-210ENST00000434472 MT1EP04732 61 aa3.65□□□□□ -1.83
CD44-210ENST00000434472 MT1LQ93083 61 aa3.64□□□□□ -1.83
CD44-210ENST00000434472 SSPOA2VEC9 5147 aa3.64□□□□□ -1.83
CD44-210ENST00000434472 KRTAP9-6A8MVA2 160 aa3.59□□□□□ -1.84
CD44-210ENST00000434472 KRTAP4-12Q9BQ66 201 aa3.58□□□□□ -1.84
CD44-210ENST00000434472 KMT2DO14686 5537 aa3.55□□□□□ -1.84
CD44-210ENST00000434472 KRTAP4-7Q9BYR0 210 aa3.55□□□□□ -1.84
CD44-210ENST00000434472 FCGBPQ9Y6R7 5405 aaPredicted RBP3.54□□□□□ -1.84
CD44-210ENST00000434472 KRTAP2-3P0C7H8 128 aa3.53□□□□□ -1.84
CD44-210ENST00000434472 KRTAP2-4Q9BYR9 128 aa3.53□□□□□ -1.84
CD44-210ENST00000434472 KRTAP2-1Q9BYU5 128 aa3.53□□□□□ -1.84
CD44-210ENST00000434472 MACF1Q9UPN3 7388 aaKnown RBP3.5□□□□□ -1.85
CD44-210ENST00000434472 SYNE2Q8WXH0 6885 aaKnown RBP3.47□□□□□ -1.85
CD44-210ENST00000434472 MT1GP13640 62 aa3.45□□□□□ -1.86
CD44-210ENST00000434472 LCE3BQ5TA77 95 aa3.44□□□□□ -1.86
CD44-210ENST00000434472 KRTAP19-3Q7Z4W3 81 aa3.44□□□□□ -1.86
CD44-210ENST00000434472 KRTAP9-9Q9BYP9 154 aa3.43□□□□□ -1.86
CD44-210ENST00000434472 KRTAP9-4Q9BYQ2 154 aa3.43□□□□□ -1.86
CD44-210ENST00000434472 MT1MQ8N339 61 aa3.42□□□□□ -1.86
CD44-210ENST00000434472 KRTAP6-3Q3LI67 103 aa3.41□□□□□ -1.86
CD44-210ENST00000434472 KRTAP4-3Q9BYR4 195 aa3.35□□□□□ -1.87
CD44-210ENST00000434472 LCE4AQ5TA78 99 aa3.33□□□□□ -1.88
CD44-210ENST00000434472 LCE5AQ5TCM9 118 aa3.31□□□□□ -1.88
CD44-210ENST00000434472 SPRR2FQ96RM1 72 aa3.3□□□□□ -1.88
CD44-210ENST00000434472 NEBP20929 6669 aa3.3□□□□□ -1.88
CD44-210ENST00000434472 KRTAP20-1Q3LI63 56 aa3.26□□□□□ -1.89
CD44-210ENST00000434472 LCE1DQ5T752 114 aa3.26□□□□□ -1.89
CD44-210ENST00000434472 MUC12Q9UKN1 5478 aa3.21□□□□□ -1.9
CD44-210ENST00000434472 KRTAP5-9P26371 169 aa3.16□□□□□ -1.9
CD44-210ENST00000434472 KRTAP4-9Q9BYQ8 210 aa3.16□□□□□ -1.9
CD44-210ENST00000434472 MT1AP04731 61 aa3.11□□□□□ -1.91
CD44-210ENST00000434472 LCE1AQ5T7P2 110 aa3.11□□□□□ -1.91
CD44-210ENST00000434472 KRTAP4-2Q9BYR5 136 aa3.11□□□□□ -1.91
CD44-210ENST00000434472 KRTAP12-4P60329 112 aa3.07□□□□□ -1.92
CD44-210ENST00000434472 KRTAP4-11Q9BYQ6 195 aa3.07□□□□□ -1.92
CD44-210ENST00000434472 MDN1Q9NU22 5596 aa3.06□□□□□ -1.92
CD44-210ENST00000434472 SPRR2EP22531 72 aa3.05□□□□□ -1.92
CD44-210ENST00000434472 SPRR2BP35325 72 aa3.05□□□□□ -1.92
CD44-210ENST00000434472 SPRR2AP35326 72 aa3.05□□□□□ -1.92
CD44-210ENST00000434472 KRTAP6-1Q3LI64 71 aa3.05□□□□□ -1.92
CD44-210ENST00000434472 KRTAP5-5Q701N2 237 aaPredicted RBP3.03□□□□□ -1.92
CD44-210ENST00000434472 KRTAP2-2Q9BYT5 123 aa3.02□□□□□ -1.93
CD44-210ENST00000434472 LCE3DQ9BYE3 92 aa2.94□□□□□ -1.94
CD44-210ENST00000434472 DSTQ03001 7570 aaKnown RBP2.94□□□□□ -1.94
CD44-210ENST00000434472 SPRR2DP22532 72 aa2.93□□□□□ -1.94
CD44-210ENST00000434472 LCE3EQ5T5B0 92 aa2.91□□□□□ -1.94
CD44-210ENST00000434472 GPR98Q8WXG9 6306 aa2.85□□□□□ -1.95
CD44-210ENST00000434472 SYNE1Q8NF91 8797 aaKnown RBP2.82□□□□□ -1.96
CD44-210ENST00000434472 MT3P25713 68 aa2.81□□□□□ -1.96
CD44-210ENST00000434472 KRTAP6-2Q3LI66 62 aa2.75□□□□□ -1.97
CD44-210ENST00000434472 KRTAP5-4Q6L8H1 288 aa2.71□□□□□ -1.97
CD44-210ENST00000434472 PRM1P04553 51 aa2.7□□□□□ -1.98
CD44-210ENST00000434472 KRTAP5-10Q6L8G5 202 aa2.6□□□□□ -1.99
CD44-210ENST00000434472 HMCN1Q96RW7 5635 aa2.6□□□□□ -1.99
CD44-210ENST00000434472 KRTAP5-7Q6L8G8 165 aa2.55□□□□□ -2
CD44-210ENST00000434472 KRTAP20-2Q3LI61 65 aa2.53□□□□□ -2
CD44-210ENST00000434472 KRTAP5-2Q701N4 177 aa2.53□□□□□ -2
CD44-210ENST00000434472 MT4P47944 62 aa2.52□□□□□ -2.01
CD44-210ENST00000434472 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.5□□□□□ -2.01
CD44-210ENST00000434472 AHNAK2Q8IVF2 5795 aa2.49□□□□□ -2.01
CD44-210ENST00000434472 OBSCNQ5VST9 7968 aa2.49□□□□□ -2.01
CD44-210ENST00000434472 LCE1EQ5T753 118 aa2.33□□□□□ -2.04
CD44-210ENST00000434472 LCE1FQ5T754 118 aa2.27□□□□□ -2.05
CD44-210ENST00000434472 MUC5ACP98088 5654 aa2.24□□□□□ -2.05
CD44-210ENST00000434472 LCE1BQ5T7P3 118 aa2.2□□□□□ -2.06
CD44-210ENST00000434472 LCE1CQ5T751 118 aa2.17□□□□□ -2.06
CD44-210ENST00000434472 KRTAP5-1Q6L8H4 278 aa2.15□□□□□ -2.07
CD44-210ENST00000434472 KRTAP5-8O75690 187 aa2.14□□□□□ -2.07
CD44-210ENST00000434472 AHNAKQ09666 5890 aaKnown RBP2.11□□□□□ -2.07
CD44-210ENST00000434472 MUC5BQ9HC84 5762 aaPredicted RBP2.1□□□□□ -2.07
CD44-210ENST00000434472 KRTAP5-11Q6L8G4 156 aa2.09□□□□□ -2.08
CD44-210ENST00000434472 KRTAP4-4Q9BYR3 166 aa2.04□□□□□ -2.08
CD44-210ENST00000434472 KRTAP21-2Q3LI59 83 aa1.99□□□□□ -2.09
CD44-210ENST00000434472 KRTAP21-1Q3LI58 79 aa1.73□□□□□ -2.13
CD44-210ENST00000434472 PHGR1C9JFL3 82 aa1.6□□□□□ -2.15
CD44-210ENST00000434472 MUC19Q7Z5P9 8384 aa1.46□□□□□ -2.18
CD44-210ENST00000434472 MUC16Q8WXI7 14507 aa1.08□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 10.4 ms