RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 KRTAP4-7Q9BYR0 210 aa3.86□□□□□ -1.79
USP4-205ENST00000431357 KRTAP19-6Q3LI70 58 aa3.83□□□□□ -1.8
USP4-205ENST00000431357 SSPOA2VEC9 5147 aa3.8□□□□□ -1.8
USP4-205ENST00000431357 KRTAP9-2Q9BYQ4 174 aa3.8□□□□□ -1.8
USP4-205ENST00000431357 FSIP2Q5CZC0 6907 aa3.79□□□□□ -1.8
USP4-205ENST00000431357 KRTAP4-12Q9BQ66 201 aa3.73□□□□□ -1.81
USP4-205ENST00000431357 MT1GP13640 62 aa3.67□□□□□ -1.82
USP4-205ENST00000431357 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.66□□□□□ -1.82
USP4-205ENST00000431357 KRTAP19-3Q7Z4W3 81 aa3.65□□□□□ -1.82
USP4-205ENST00000431357 KRTAP9-6A0A140TA67 174 aa3.65□□□□□ -1.83
USP4-205ENST00000431357 MT1MQ8N339 61 aa3.65□□□□□ -1.83
USP4-205ENST00000431357 LCE4AQ5TA78 99 aa3.64□□□□□ -1.83
USP4-205ENST00000431357 CRCT1Q9UGL9 99 aa3.64□□□□□ -1.83
USP4-205ENST00000431357 KRTAP9-7A8MTY7 169 aa3.63□□□□□ -1.83
USP4-205ENST00000431357 KRTAP4-3Q9BYR4 195 aa3.61□□□□□ -1.83
USP4-205ENST00000431357 FCGBPQ9Y6R7 5405 aaPredicted RBP3.58□□□□□ -1.84
USP4-205ENST00000431357 LCE3BQ5TA77 95 aa3.57□□□□□ -1.84
USP4-205ENST00000431357 LCE5AQ5TCM9 118 aa3.52□□□□□ -1.85
USP4-205ENST00000431357 KRTAP9-9Q9BYP9 154 aa3.5□□□□□ -1.85
USP4-205ENST00000431357 KRTAP9-4Q9BYQ2 154 aa3.5□□□□□ -1.85
USP4-205ENST00000431357 MACF1Q9UPN3 7388 aaKnown RBP3.49□□□□□ -1.85
USP4-205ENST00000431357 SPRR2FQ96RM1 72 aa3.46□□□□□ -1.86
USP4-205ENST00000431357 MUC12Q9UKN1 5478 aa3.44□□□□□ -1.86
USP4-205ENST00000431357 KRTAP12-4P60329 112 aa3.44□□□□□ -1.86
USP4-205ENST00000431357 SYNE2Q8WXH0 6885 aaKnown RBP3.4□□□□□ -1.87
USP4-205ENST00000431357 KRTAP2-2Q9BYT5 123 aa3.37□□□□□ -1.87
USP4-205ENST00000431357 MT1AP04731 61 aa3.35□□□□□ -1.87
USP4-205ENST00000431357 LCE1DQ5T752 114 aa3.35□□□□□ -1.87
USP4-205ENST00000431357 KRTAP6-1Q3LI64 71 aa3.29□□□□□ -1.88
USP4-205ENST00000431357 KRTAP5-9P26371 169 aa3.28□□□□□ -1.89
USP4-205ENST00000431357 KRTAP6-3Q3LI67 103 aa3.26□□□□□ -1.89
USP4-205ENST00000431357 LCE1AQ5T7P2 110 aa3.24□□□□□ -1.89
USP4-205ENST00000431357 DSTQ03001 7570 aaKnown RBP3.23□□□□□ -1.89
USP4-205ENST00000431357 KRTAP4-9Q9BYQ8 210 aa3.23□□□□□ -1.89
USP4-205ENST00000431357 KRTAP5-5Q701N2 237 aaPredicted RBP3.22□□□□□ -1.89
USP4-205ENST00000431357 LCE3DQ9BYE3 92 aa3.22□□□□□ -1.89
USP4-205ENST00000431357 LCE3EQ5T5B0 92 aa3.19□□□□□ -1.9
USP4-205ENST00000431357 KRTAP4-11Q9BYQ6 195 aa3.16□□□□□ -1.9
USP4-205ENST00000431357 SYNE1Q8NF91 8797 aaKnown RBP3.16□□□□□ -1.9
USP4-205ENST00000431357 MDN1Q9NU22 5596 aa3.15□□□□□ -1.91
USP4-205ENST00000431357 SPRR2EP22531 72 aa3.15□□□□□ -1.91
USP4-205ENST00000431357 SPRR2BP35325 72 aa3.15□□□□□ -1.91
USP4-205ENST00000431357 SPRR2AP35326 72 aa3.15□□□□□ -1.91
USP4-205ENST00000431357 NEBP20929 6669 aa3.12□□□□□ -1.91
USP4-205ENST00000431357 PRM1P04553 51 aa3.09□□□□□ -1.91
USP4-205ENST00000431357 KRTAP4-2Q9BYR5 136 aa3.08□□□□□ -1.92
USP4-205ENST00000431357 SPRR2DP22532 72 aa3.02□□□□□ -1.93
USP4-205ENST00000431357 MT3P25713 68 aa2.99□□□□□ -1.93
USP4-205ENST00000431357 KRTAP6-2Q3LI66 62 aa2.94□□□□□ -1.94
USP4-205ENST00000431357 LCE1EQ5T753 118 aa2.89□□□□□ -1.95
USP4-205ENST00000431357 KRTAP20-1Q3LI63 56 aa2.86□□□□□ -1.95
USP4-205ENST00000431357 KRTAP5-4Q6L8H1 288 aa2.83□□□□□ -1.96
USP4-205ENST00000431357 OBSCNQ5VST9 7968 aa2.69□□□□□ -1.98
USP4-205ENST00000431357 KRTAP5-2Q701N4 177 aa2.66□□□□□ -1.98
USP4-205ENST00000431357 KRTAP20-2Q3LI61 65 aa2.64□□□□□ -1.99
USP4-205ENST00000431357 MT4P47944 62 aa2.62□□□□□ -1.99
USP4-205ENST00000431357 KRTAP5-3Q6L8H2 238 aa2.6□□□□□ -1.99
USP4-205ENST00000431357 LCE1FQ5T754 118 aa2.57□□□□□ -2
USP4-205ENST00000431357 HMCN1Q96RW7 5635 aa2.56□□□□□ -2
USP4-205ENST00000431357 GPR98Q8WXG9 6306 aa2.42□□□□□ -2.02
USP4-205ENST00000431357 MUC5ACP98088 5654 aa2.42□□□□□ -2.02
USP4-205ENST00000431357 LCE1BQ5T7P3 118 aa2.34□□□□□ -2.03
USP4-205ENST00000431357 KRTAP5-10Q6L8G5 202 aa2.34□□□□□ -2.03
USP4-205ENST00000431357 AHNAK2Q8IVF2 5795 aa2.33□□□□□ -2.04
USP4-205ENST00000431357 KRTAP5-1Q6L8H4 278 aa2.33□□□□□ -2.04
USP4-205ENST00000431357 LCE1CQ5T751 118 aa2.3□□□□□ -2.04
USP4-205ENST00000431357 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.19□□□□□ -2.06
USP4-205ENST00000431357 KRTAP5-7Q6L8G8 165 aa2.18□□□□□ -2.06
USP4-205ENST00000431357 KRTAP5-11Q6L8G4 156 aa2.15□□□□□ -2.07
USP4-205ENST00000431357 KRTAP5-8O75690 187 aa2.14□□□□□ -2.07
USP4-205ENST00000431357 KRTAP21-2Q3LI59 83 aa2.14□□□□□ -2.07
USP4-205ENST00000431357 KRTAP21-1Q3LI58 79 aa2.1□□□□□ -2.07
USP4-205ENST00000431357 AHNAKQ09666 5890 aaKnown RBP1.89□□□□□ -2.11
USP4-205ENST00000431357 MUC5BQ9HC84 5762 aaPredicted RBP1.88□□□□□ -2.11
USP4-205ENST00000431357 KRTAP4-4Q9BYR3 166 aa1.88□□□□□ -2.11
USP4-205ENST00000431357 MUC19Q7Z5P9 8384 aa1.72□□□□□ -2.13
USP4-205ENST00000431357 PHGR1C9JFL3 82 aa1.69□□□□□ -2.14
USP4-205ENST00000431357 MUC16Q8WXI7 14507 aa1.14□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 198.1 ms