RNA–Protein interactions for RNA: ENST00000424011.6

CMTM3-202, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CMTM3, Length 2,330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-202ENST00000424011 MT1LQ93083 61 aa5.82□□□□□ -1.48
CMTM3-202ENST00000424011 SYNE2Q8WXH0 6885 aaKnown RBP5.8□□□□□ -1.48
CMTM3-202ENST00000424011 KRTAP4-7Q9BYR0 210 aa5.75□□□□□ -1.49
CMTM3-202ENST00000424011 SPRR2FQ96RM1 72 aa5.7□□□□□ -1.5
CMTM3-202ENST00000424011 MUC12Q9UKN1 5478 aa5.7□□□□□ -1.5
CMTM3-202ENST00000424011 KRTAP9-6A8MVA2 160 aa5.7□□□□□ -1.5
CMTM3-202ENST00000424011 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.68□□□□□ -1.5
CMTM3-202ENST00000424011 KRTAP5-9P26371 169 aa5.65□□□□□ -1.5
CMTM3-202ENST00000424011 KRTAP19-3Q7Z4W3 81 aa5.64□□□□□ -1.51
CMTM3-202ENST00000424011 MT1GP13640 62 aa5.62□□□□□ -1.51
CMTM3-202ENST00000424011 KRTAP2-3P0C7H8 128 aa5.59□□□□□ -1.51
CMTM3-202ENST00000424011 KRTAP2-4Q9BYR9 128 aa5.59□□□□□ -1.51
CMTM3-202ENST00000424011 KRTAP2-1Q9BYU5 128 aa5.59□□□□□ -1.51
CMTM3-202ENST00000424011 KRTAP6-3Q3LI67 103 aa5.56□□□□□ -1.52
CMTM3-202ENST00000424011 MT1MQ8N339 61 aa5.54□□□□□ -1.52
CMTM3-202ENST00000424011 MDN1Q9NU22 5596 aa5.52□□□□□ -1.53
CMTM3-202ENST00000424011 LCE5AQ5TCM9 118 aa5.5□□□□□ -1.53
CMTM3-202ENST00000424011 LCE1AQ5T7P2 110 aa5.46□□□□□ -1.54
CMTM3-202ENST00000424011 KRTAP4-3Q9BYR4 195 aa5.46□□□□□ -1.54
CMTM3-202ENST00000424011 SPRR2EP22531 72 aa5.4□□□□□ -1.54
CMTM3-202ENST00000424011 SPRR2BP35325 72 aa5.4□□□□□ -1.54
CMTM3-202ENST00000424011 SPRR2AP35326 72 aa5.4□□□□□ -1.54
CMTM3-202ENST00000424011 KRTAP9-7A8MTY7 169 aa5.4□□□□□ -1.55
CMTM3-202ENST00000424011 LOC100996750A0A140TA64 210 aa5.37□□□□□ -1.55
CMTM3-202ENST00000424011 DSTQ03001 7570 aaKnown RBP5.3□□□□□ -1.56
CMTM3-202ENST00000424011 NEBP20929 6669 aa5.22□□□□□ -1.57
CMTM3-202ENST00000424011 SPRR2DP22532 72 aa5.2□□□□□ -1.58
CMTM3-202ENST00000424011 KRTAP12-4P60329 112 aa5.07□□□□□ -1.6
CMTM3-202ENST00000424011 LCE3BQ5TA77 95 aa5.01□□□□□ -1.61
CMTM3-202ENST00000424011 KRTAP5-5Q701N2 237 aaPredicted RBP4.96□□□□□ -1.62
CMTM3-202ENST00000424011 MT1AP04731 61 aa4.95□□□□□ -1.62
CMTM3-202ENST00000424011 KRTAP6-1Q3LI64 71 aa4.89□□□□□ -1.63
CMTM3-202ENST00000424011 KRTAP20-1Q3LI63 56 aa4.77□□□□□ -1.65
CMTM3-202ENST00000424011 KRTAP2-2Q9BYT5 123 aa4.75□□□□□ -1.65
CMTM3-202ENST00000424011 SYNE1Q8NF91 8797 aaKnown RBP4.74□□□□□ -1.65
CMTM3-202ENST00000424011 KRTAP5-4Q6L8H1 288 aa4.72□□□□□ -1.65
CMTM3-202ENST00000424011 KRTAP4-9Q9BYQ8 210 aa4.72□□□□□ -1.65
CMTM3-202ENST00000424011 KRTAP9-4Q9BYQ2 154 aa4.69□□□□□ -1.66
CMTM3-202ENST00000424011 LCE4AQ5TA78 99 aa4.62□□□□□ -1.67
CMTM3-202ENST00000424011 PRM1P04553 51 aa4.57□□□□□ -1.68
CMTM3-202ENST00000424011 MT4P47944 62 aa4.53□□□□□ -1.68
CMTM3-202ENST00000424011 KRTAP4-6Q9BYQ5 205 aa4.51□□□□□ -1.69
CMTM3-202ENST00000424011 LCE3DQ9BYE3 92 aa4.51□□□□□ -1.69
CMTM3-202ENST00000424011 MT3P25713 68 aa4.5□□□□□ -1.69
CMTM3-202ENST00000424011 LCE3EQ5T5B0 92 aa4.48□□□□□ -1.69
CMTM3-202ENST00000424011 KRTAP6-2Q3LI66 62 aa4.47□□□□□ -1.69
CMTM3-202ENST00000424011 LCE1DQ5T752 114 aa4.45□□□□□ -1.7
CMTM3-202ENST00000424011 HMCN1Q96RW7 5635 aa4.42□□□□□ -1.7
CMTM3-202ENST00000424011 KRTAP20-2Q3LI61 65 aa4.41□□□□□ -1.7
CMTM3-202ENST00000424011 KRTAP5-2Q701N4 177 aa4.28□□□□□ -1.72
CMTM3-202ENST00000424011 KRTAP5-3Q6L8H2 238 aa4.26□□□□□ -1.73
CMTM3-202ENST00000424011 OBSCNQ5VST9 7968 aa4.19□□□□□ -1.74
CMTM3-202ENST00000424011 LCE1EQ5T753 118 aa3.98□□□□□ -1.77
CMTM3-202ENST00000424011 AHNAK2Q8IVF2 5795 aa3.9□□□□□ -1.78
CMTM3-202ENST00000424011 GPR98Q8WXG9 6306 aa3.9□□□□□ -1.79
CMTM3-202ENST00000424011 KRTAP4-11Q9BYQ6 195 aa3.84□□□□□ -1.79
CMTM3-202ENST00000424011 KRTAP5-10Q6L8G5 202 aa3.71□□□□□ -1.82
CMTM3-202ENST00000424011 KRTAP5-1Q6L8H4 278 aa3.71□□□□□ -1.82
CMTM3-202ENST00000424011 KRTAP5-8O75690 187 aa3.69□□□□□ -1.82
CMTM3-202ENST00000424011 LCE1BQ5T7P3 118 aa3.6□□□□□ -1.83
CMTM3-202ENST00000424011 LCE1CQ5T751 118 aa3.58□□□□□ -1.84
CMTM3-202ENST00000424011 MUC5ACP98088 5654 aa3.57□□□□□ -1.84
CMTM3-202ENST00000424011 KRTAP5-7Q6L8G8 165 aa3.57□□□□□ -1.84
CMTM3-202ENST00000424011 KRTAP4-2Q9BYR5 136 aa3.56□□□□□ -1.84
CMTM3-202ENST00000424011 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.36□□□□□ -1.87
CMTM3-202ENST00000424011 KRTAP9-9Q9BYP9 154 aa3.32□□□□□ -1.88
CMTM3-202ENST00000424011 LCE1FQ5T754 118 aa3.25□□□□□ -1.89
CMTM3-202ENST00000424011 MUC5BQ9HC84 5762 aaPredicted RBP3.19□□□□□ -1.9
CMTM3-202ENST00000424011 KRTAP21-2Q3LI59 83 aa3.19□□□□□ -1.9
CMTM3-202ENST00000424011 KRTAP5-11Q6L8G4 156 aa3.13□□□□□ -1.91
CMTM3-202ENST00000424011 AHNAKQ09666 5890 aaKnown RBP3.13□□□□□ -1.91
CMTM3-202ENST00000424011 KRTAP21-1Q3LI58 79 aa2.97□□□□□ -1.93
CMTM3-202ENST00000424011 KRTAP4-12Q9BQ66 201 aa2.96□□□□□ -1.94
CMTM3-202ENST00000424011 KRTAP4-4Q9BYR3 166 aa2.87□□□□□ -1.95
CMTM3-202ENST00000424011 MUC19Q7Z5P9 8384 aa2.75□□□□□ -1.97
CMTM3-202ENST00000424011 PHGR1C9JFL3 82 aa2.7□□□□□ -1.98
CMTM3-202ENST00000424011 MUC16Q8WXI7 14507 aa1.73□□□□□ -2.13
Retrieved 77 of 20,778 RNA–protein pairs in 85 ms