RNA–Protein interactions for RNA: ENST00000421999.7

CMSS1-201, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CMSS1, Length 4,330 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-201ENST00000421999 KRTAP19-4Q3LI73 84 aa3.42□□□□□ -1.86
CMSS1-201ENST00000421999 MT1EP04732 61 aa3.35□□□□□ -1.87
CMSS1-201ENST00000421999 KRTAP19-3Q7Z4W3 81 aa3.34□□□□□ -1.87
CMSS1-201ENST00000421999 KRTAP4-7Q9BYR0 210 aa3.33□□□□□ -1.88
CMSS1-201ENST00000421999 MT1LQ93083 61 aa3.32□□□□□ -1.88
CMSS1-201ENST00000421999 SSPOA2VEC9 5147 aa3.31□□□□□ -1.88
CMSS1-201ENST00000421999 OBSCNQ5VST9 7968 aa3.31□□□□□ -1.88
CMSS1-201ENST00000421999 KRTAP12-4P60329 112 aa3.3□□□□□ -1.88
CMSS1-201ENST00000421999 KRTAP19-7Q3SYF9 63 aa3.3□□□□□ -1.88
CMSS1-201ENST00000421999 SYNE2Q8WXH0 6885 aaKnown RBP3.3□□□□□ -1.88
CMSS1-201ENST00000421999 KMT2DO14686 5537 aa3.28□□□□□ -1.88
CMSS1-201ENST00000421999 LCE3BQ5TA77 95 aa3.28□□□□□ -1.89
CMSS1-201ENST00000421999 FCGBPQ9Y6R7 5405 aaPredicted RBP3.27□□□□□ -1.89
CMSS1-201ENST00000421999 KRTAP9-7A8MTY7 169 aa3.25□□□□□ -1.89
CMSS1-201ENST00000421999 MACF1Q9UPN3 7388 aaKnown RBP3.22□□□□□ -1.89
CMSS1-201ENST00000421999 MT1MQ8N339 61 aa3.21□□□□□ -1.9
CMSS1-201ENST00000421999 KRTAP4-3Q9BYR4 195 aa3.2□□□□□ -1.9
CMSS1-201ENST00000421999 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.2□□□□□ -1.9
CMSS1-201ENST00000421999 DSTQ03001 7570 aaKnown RBP3.19□□□□□ -1.9
CMSS1-201ENST00000421999 MT4P47944 62 aa3.15□□□□□ -1.91
CMSS1-201ENST00000421999 KRTAP6-3Q3LI67 103 aa3.12□□□□□ -1.91
CMSS1-201ENST00000421999 MUC12Q9UKN1 5478 aa3.12□□□□□ -1.91
CMSS1-201ENST00000421999 LOC100996750A0A140TA64 210 aa3.12□□□□□ -1.91
CMSS1-201ENST00000421999 LCE1AQ5T7P2 110 aa3.07□□□□□ -1.92
CMSS1-201ENST00000421999 KRTAP20-1Q3LI63 56 aa3.06□□□□□ -1.92
CMSS1-201ENST00000421999 LCE5AQ5TCM9 118 aa3.04□□□□□ -1.92
CMSS1-201ENST00000421999 LCE3DQ9BYE3 92 aa3□□□□□ -1.93
CMSS1-201ENST00000421999 KRTAP9-6A8MVA2 160 aa2.97□□□□□ -1.93
CMSS1-201ENST00000421999 KRTAP2-3P0C7H8 128 aa2.96□□□□□ -1.94
CMSS1-201ENST00000421999 KRTAP2-4Q9BYR9 128 aa2.96□□□□□ -1.94
CMSS1-201ENST00000421999 MT3P25713 68 aa2.96□□□□□ -1.94
CMSS1-201ENST00000421999 KRTAP5-9P26371 169 aa2.95□□□□□ -1.94
CMSS1-201ENST00000421999 LCE3EQ5T5B0 92 aa2.92□□□□□ -1.94
CMSS1-201ENST00000421999 KRTAP2-2Q9BYT5 123 aa2.89□□□□□ -1.95
CMSS1-201ENST00000421999 KRTAP2-1Q9BYU5 128 aa2.89□□□□□ -1.95
CMSS1-201ENST00000421999 KRTAP4-9Q9BYQ8 210 aa2.88□□□□□ -1.95
CMSS1-201ENST00000421999 MT1AP04731 61 aa2.88□□□□□ -1.95
CMSS1-201ENST00000421999 MDN1Q9NU22 5596 aa2.88□□□□□ -1.95
CMSS1-201ENST00000421999 LCE1DQ5T752 114 aa2.84□□□□□ -1.95
CMSS1-201ENST00000421999 LCE1BQ5T7P3 118 aa2.82□□□□□ -1.96
CMSS1-201ENST00000421999 KRTAP6-1Q3LI64 71 aa2.82□□□□□ -1.96
CMSS1-201ENST00000421999 NEBP20929 6669 aa2.78□□□□□ -1.96
CMSS1-201ENST00000421999 LCE4AQ5TA78 99 aa2.77□□□□□ -1.97
CMSS1-201ENST00000421999 KRTAP6-2Q3LI66 62 aa2.72□□□□□ -1.97
CMSS1-201ENST00000421999 KRTAP9-4Q9BYQ2 154 aa2.68□□□□□ -1.98
CMSS1-201ENST00000421999 GPR98Q8WXG9 6306 aa2.64□□□□□ -1.99
CMSS1-201ENST00000421999 KRTAP4-6Q9BYQ5 205 aa2.59□□□□□ -1.99
CMSS1-201ENST00000421999 PRM1P04553 51 aa2.57□□□□□ -2
CMSS1-201ENST00000421999 MUC19Q7Z5P9 8384 aa2.5□□□□□ -2.01
CMSS1-201ENST00000421999 KRTAP20-2Q3LI61 65 aa2.49□□□□□ -2.01
CMSS1-201ENST00000421999 KRTAP5-5Q701N2 237 aaPredicted RBP2.49□□□□□ -2.01
CMSS1-201ENST00000421999 KRTAP5-4Q6L8H1 288 aa2.38□□□□□ -2.03
CMSS1-201ENST00000421999 KRTAP9-9Q9BYP9 154 aa2.37□□□□□ -2.03
CMSS1-201ENST00000421999 LCE1CQ5T751 118 aa2.35□□□□□ -2.03
CMSS1-201ENST00000421999 LCE1EQ5T753 118 aa2.35□□□□□ -2.03
CMSS1-201ENST00000421999 LCE1FQ5T754 118 aa2.35□□□□□ -2.03
CMSS1-201ENST00000421999 HMCN1Q96RW7 5635 aa2.31□□□□□ -2.04
CMSS1-201ENST00000421999 MUC5ACP98088 5654 aa2.25□□□□□ -2.05
CMSS1-201ENST00000421999 KRTAP4-11Q9BYQ6 195 aa2.23□□□□□ -2.05
CMSS1-201ENST00000421999 KRTAP5-3Q6L8H2 238 aa2.17□□□□□ -2.06
CMSS1-201ENST00000421999 AHNAK2Q8IVF2 5795 aa2.12□□□□□ -2.07
CMSS1-201ENST00000421999 KRTAP5-2Q701N4 177 aa2.12□□□□□ -2.07
CMSS1-201ENST00000421999 KRTAP4-12Q9BQ66 201 aa2.09□□□□□ -2.07
CMSS1-201ENST00000421999 KRTAP4-2Q9BYR5 136 aa2.09□□□□□ -2.07
CMSS1-201ENST00000421999 KRTAP4-4Q9BYR3 166 aa2.01□□□□□ -2.09
CMSS1-201ENST00000421999 KRTAP5-8O75690 187 aa1.99□□□□□ -2.09
CMSS1-201ENST00000421999 KRTAP5-1Q6L8H4 278 aa1.89□□□□□ -2.11
CMSS1-201ENST00000421999 KRTAP5-10Q6L8G5 202 aa1.85□□□□□ -2.11
CMSS1-201ENST00000421999 AHNAKQ09666 5890 aaKnown RBP1.79□□□□□ -2.12
CMSS1-201ENST00000421999 MUC5BQ9HC84 5762 aaPredicted RBP1.78□□□□□ -2.13
CMSS1-201ENST00000421999 KRTAP5-7Q6L8G8 165 aa1.74□□□□□ -2.13
CMSS1-201ENST00000421999 KRTAP5-11Q6L8G4 156 aa1.68□□□□□ -2.14
CMSS1-201ENST00000421999 KRTAP21-2Q3LI59 83 aa1.65□□□□□ -2.14
CMSS1-201ENST00000421999 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.62□□□□□ -2.15
CMSS1-201ENST00000421999 PHGR1C9JFL3 82 aa1.6□□□□□ -2.15
CMSS1-201ENST00000421999 KRTAP21-1Q3LI58 79 aa1.41□□□□□ -2.18
CMSS1-201ENST00000421999 MUC16Q8WXI7 14507 aa0.99□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 11.5 ms