RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 KRTAP19-4Q3LI73 84 aa7.07□□□□□ -1.28
USP48-205ENST00000421625 LCE2DQ5TA82 110 aaPredicted RBP7.03□□□□□ -1.28
USP48-205ENST00000421625 LOC100996750A0A140TA64 210 aa6.96□□□□□ -1.29
USP48-205ENST00000421625 MUC12Q9UKN1 5478 aa6.92□□□□□ -1.3
USP48-205ENST00000421625 KRTAP4-3Q9BYR4 195 aa6.91□□□□□ -1.3
USP48-205ENST00000421625 MT1GP13640 62 aa6.83□□□□□ -1.32
USP48-205ENST00000421625 MACF1Q9UPN3 7388 aaKnown RBP6.82□□□□□ -1.32
USP48-205ENST00000421625 KRTAP9-2Q9BYQ4 174 aa6.78□□□□□ -1.32
USP48-205ENST00000421625 CRCT1Q9UGL9 99 aa6.73□□□□□ -1.33
USP48-205ENST00000421625 KRTAP12-4P60329 112 aa6.72□□□□□ -1.33
USP48-205ENST00000421625 SYNE2Q8WXH0 6885 aaKnown RBP6.7□□□□□ -1.34
USP48-205ENST00000421625 MT1MQ8N339 61 aa6.66□□□□□ -1.34
USP48-205ENST00000421625 DSTQ03001 7570 aaKnown RBP6.62□□□□□ -1.35
USP48-205ENST00000421625 SPRR2FQ96RM1 72 aa6.61□□□□□ -1.35
USP48-205ENST00000421625 KRTAP19-3Q7Z4W3 81 aa6.58□□□□□ -1.36
USP48-205ENST00000421625 MDN1Q9NU22 5596 aa6.51□□□□□ -1.37
USP48-205ENST00000421625 LCE3BQ5TA77 95 aa6.42□□□□□ -1.38
USP48-205ENST00000421625 KRTAP4-9Q9BYQ8 210 aa6.41□□□□□ -1.38
USP48-205ENST00000421625 LCE5AQ5TCM9 118 aa6.35□□□□□ -1.39
USP48-205ENST00000421625 SYNE1Q8NF91 8797 aaKnown RBP6.24□□□□□ -1.41
USP48-205ENST00000421625 MT1AP04731 61 aa6.18□□□□□ -1.42
USP48-205ENST00000421625 KRTAP5-9P26371 169 aa6.18□□□□□ -1.42
USP48-205ENST00000421625 LCE1AQ5T7P2 110 aa6.17□□□□□ -1.42
USP48-205ENST00000421625 KRTAP6-1Q3LI64 71 aa6.17□□□□□ -1.42
USP48-205ENST00000421625 SPRR2EP22531 72 aa6.12□□□□□ -1.43
USP48-205ENST00000421625 SPRR2BP35325 72 aa6.12□□□□□ -1.43
USP48-205ENST00000421625 SPRR2AP35326 72 aa6.12□□□□□ -1.43
USP48-205ENST00000421625 LCE3DQ9BYE3 92 aa6.1□□□□□ -1.43
USP48-205ENST00000421625 KRTAP9-7A8MTY7 169 aa6.09□□□□□ -1.43
USP48-205ENST00000421625 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.06□□□□□ -1.44
USP48-205ENST00000421625 OBSCNQ5VST9 7968 aa6.05□□□□□ -1.44
USP48-205ENST00000421625 KRTAP5-5Q701N2 237 aaPredicted RBP6.05□□□□□ -1.44
USP48-205ENST00000421625 LCE3EQ5T5B0 92 aa6.04□□□□□ -1.44
USP48-205ENST00000421625 KRTAP9-6A0A140TA67 174 aa6.03□□□□□ -1.44
USP48-205ENST00000421625 PRM1P04553 51 aa6.02□□□□□ -1.45
USP48-205ENST00000421625 KRTAP6-3Q3LI67 103 aa5.89□□□□□ -1.47
USP48-205ENST00000421625 SPRR2DP22532 72 aa5.86□□□□□ -1.47
USP48-205ENST00000421625 KRTAP6-2Q3LI66 62 aa5.72□□□□□ -1.49
USP48-205ENST00000421625 KRTAP9-4Q9BYQ2 154 aa5.63□□□□□ -1.51
USP48-205ENST00000421625 NEBP20929 6669 aa5.61□□□□□ -1.51
USP48-205ENST00000421625 KRTAP2-2Q9BYT5 123 aa5.43□□□□□ -1.54
USP48-205ENST00000421625 MT3P25713 68 aa5.36□□□□□ -1.55
USP48-205ENST00000421625 LCE1EQ5T753 118 aa5.34□□□□□ -1.55
USP48-205ENST00000421625 MT4P47944 62 aa5.24□□□□□ -1.57
USP48-205ENST00000421625 KRTAP5-4Q6L8H1 288 aa5.23□□□□□ -1.57
USP48-205ENST00000421625 KRTAP4-6Q9BYQ5 205 aa5.21□□□□□ -1.58
USP48-205ENST00000421625 LCE1DQ5T752 114 aa5.1□□□□□ -1.59
USP48-205ENST00000421625 HMCN1Q96RW7 5635 aa5.08□□□□□ -1.6
USP48-205ENST00000421625 LCE4AQ5TA78 99 aa5□□□□□ -1.61
USP48-205ENST00000421625 KRTAP20-2Q3LI61 65 aa4.98□□□□□ -1.61
USP48-205ENST00000421625 KRTAP20-1Q3LI63 56 aa4.94□□□□□ -1.62
USP48-205ENST00000421625 KRTAP5-2Q701N4 177 aa4.8□□□□□ -1.64
USP48-205ENST00000421625 KRTAP5-3Q6L8H2 238 aa4.73□□□□□ -1.65
USP48-205ENST00000421625 MUC5ACP98088 5654 aa4.69□□□□□ -1.66
USP48-205ENST00000421625 KRTAP4-11Q9BYQ6 195 aa4.55□□□□□ -1.68
USP48-205ENST00000421625 MUC19Q7Z5P9 8384 aa4.45□□□□□ -1.7
USP48-205ENST00000421625 KRTAP5-10Q6L8G5 202 aa4.42□□□□□ -1.7
USP48-205ENST00000421625 LCE1BQ5T7P3 118 aa4.36□□□□□ -1.71
USP48-205ENST00000421625 KRTAP5-1Q6L8H4 278 aa4.28□□□□□ -1.72
USP48-205ENST00000421625 LCE1FQ5T754 118 aa4.26□□□□□ -1.73
USP48-205ENST00000421625 AHNAK2Q8IVF2 5795 aa4.19□□□□□ -1.74
USP48-205ENST00000421625 KRTAP4-2Q9BYR5 136 aa4.12□□□□□ -1.75
USP48-205ENST00000421625 KRTAP5-8O75690 187 aa4.06□□□□□ -1.76
USP48-205ENST00000421625 LCE1CQ5T751 118 aa4.03□□□□□ -1.76
USP48-205ENST00000421625 KRTAP21-2Q3LI59 83 aa3.94□□□□□ -1.78
USP48-205ENST00000421625 MUC5BQ9HC84 5762 aaPredicted RBP3.82□□□□□ -1.8
USP48-205ENST00000421625 KRTAP5-7Q6L8G8 165 aa3.82□□□□□ -1.8
USP48-205ENST00000421625 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.8□□□□□ -1.8
USP48-205ENST00000421625 KRTAP21-1Q3LI58 79 aa3.78□□□□□ -1.8
USP48-205ENST00000421625 GPR98Q8WXG9 6306 aa3.75□□□□□ -1.81
USP48-205ENST00000421625 KRTAP4-4Q9BYR3 166 aa3.71□□□□□ -1.81
USP48-205ENST00000421625 KRTAP4-12Q9BQ66 201 aa3.56□□□□□ -1.84
USP48-205ENST00000421625 KRTAP9-9Q9BYP9 154 aa3.55□□□□□ -1.84
USP48-205ENST00000421625 KRTAP5-11Q6L8G4 156 aa3.51□□□□□ -1.85
USP48-205ENST00000421625 PHGR1C9JFL3 82 aa3.06□□□□□ -1.92
USP48-205ENST00000421625 AHNAKQ09666 5890 aaKnown RBP3□□□□□ -1.93
USP48-205ENST00000421625 MUC16Q8WXI7 14507 aa2.09□□□□□ -2.07
Retrieved 77 of 20,778 RNA–protein pairs in 81.6 ms