RNA–Protein interactions for RNA: ENST00000419181.5

GTF3A-202, Transcript of general transcription factor IIIA, humanhuman

TSL 1 (best)

Gene GTF3A, Length 1,191 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-202ENST00000419181 LCE3AQ5TA76 89 aa7.34□□□□□ -1.23
GTF3A-202ENST00000419181 MT1GP13640 62 aa7.31□□□□□ -1.24
GTF3A-202ENST00000419181 LCE1DQ5T752 114 aa7.3□□□□□ -1.24
GTF3A-202ENST00000419181 MT1LQ93083 61 aa7.25□□□□□ -1.25
GTF3A-202ENST00000419181 PP632Q6XCG6 107 aa7.24□□□□□ -1.25
GTF3A-202ENST00000419181 MIR22HGQ0VDD5 57 aa7.21□□□□□ -1.26
GTF3A-202ENST00000419181 MT1MQ8N339 61 aa7.2□□□□□ -1.26
GTF3A-202ENST00000419181 V9GYY9 64 aa7.16□□□□□ -1.26
GTF3A-202ENST00000419181 KRTAP4-9Q9BYQ8 210 aa7.15□□□□□ -1.26
GTF3A-202ENST00000419181 Q1T7F1 81 aa7.13□□□□□ -1.27
GTF3A-202ENST00000419181 PSPHP1O15172 72 aa7.12□□□□□ -1.27
GTF3A-202ENST00000419181 KRTAP4-2Q9BYR5 136 aa7.11□□□□□ -1.27
GTF3A-202ENST00000419181 KRTAP12-3P60328 96 aa7.06□□□□□ -1.28
GTF3A-202ENST00000419181 K7ERS5 55 aa7.04□□□□□ -1.28
GTF3A-202ENST00000419181 KRTAP25-1Q3LHN0 102 aa7.03□□□□□ -1.28
GTF3A-202ENST00000419181 KRTAP4-3Q9BYR4 195 aa7.02□□□□□ -1.29
GTF3A-202ENST00000419181 GPR98Q8WXG9 6306 aa7.01□□□□□ -1.29
GTF3A-202ENST00000419181 LCE4AQ5TA78 99 aa6.93□□□□□ -1.3
GTF3A-202ENST00000419181 MT4P47944 62 aa6.89□□□□□ -1.31
GTF3A-202ENST00000419181 A6NED7 52 aa6.88□□□□□ -1.31
GTF3A-202ENST00000419181 KRTAP4-11Q9BYQ6 195 aa6.84□□□□□ -1.31
GTF3A-202ENST00000419181 KRTAP5-4Q6L8H1 288 aa6.82□□□□□ -1.32
GTF3A-202ENST00000419181 HMCN1Q96RW7 5635 aa6.81□□□□□ -1.32
GTF3A-202ENST00000419181 RPS28P62857 69 aaKnown RBP6.81□□□□□ -1.32
GTF3A-202ENST00000419181 KRTAP23-1A1A580 65 aa6.78□□□□□ -1.32
GTF3A-202ENST00000419181 PCP4P48539 62 aa6.77□□□□□ -1.33
GTF3A-202ENST00000419181 CDC42SE1Q9NRR8 79 aa6.7□□□□□ -1.34
GTF3A-202ENST00000419181 KRTAP19-4Q3LI73 84 aa6.67□□□□□ -1.34
GTF3A-202ENST00000419181 KRTAP5-3Q6L8H2 238 aa6.63□□□□□ -1.35
GTF3A-202ENST00000419181 KRTAP15-1Q3LI76 137 aa6.62□□□□□ -1.35
GTF3A-202ENST00000419181 KRTAP5-5Q701N2 237 aaPredicted RBP6.61□□□□□ -1.35
GTF3A-202ENST00000419181 H3BS24 57 aa6.6□□□□□ -1.35
GTF3A-202ENST00000419181 ROMO1P60602 79 aa6.6□□□□□ -1.35
GTF3A-202ENST00000419181 AHNAK2Q8IVF2 5795 aa6.58□□□□□ -1.36
GTF3A-202ENST00000419181 LCE3CQ5T5A8 94 aa6.51□□□□□ -1.37
GTF3A-202ENST00000419181 KRTAP5-10Q6L8G5 202 aa6.46□□□□□ -1.38
GTF3A-202ENST00000419181 KRTAP20-2Q3LI61 65 aa6.42□□□□□ -1.38
GTF3A-202ENST00000419181 SPRR5A0A1B0GTR4 108 aa6.4□□□□□ -1.38
GTF3A-202ENST00000419181 KRTAP12-4P60329 112 aa6.38□□□□□ -1.39
GTF3A-202ENST00000419181 SYNE1Q8NF91 8797 aaKnown RBP6.33□□□□□ -1.4
GTF3A-202ENST00000419181 KRTAP5-7Q6L8G8 165 aa6.22□□□□□ -1.41
GTF3A-202ENST00000419181 KRTAP9-6A8MVA2 160 aa6.16□□□□□ -1.42
GTF3A-202ENST00000419181 MT1AP04731 61 aa6.16□□□□□ -1.42
GTF3A-202ENST00000419181 KRTAP6-1Q3LI64 71 aa6.12□□□□□ -1.43
GTF3A-202ENST00000419181 KRTAP5-2Q701N4 177 aa5.99□□□□□ -1.45
GTF3A-202ENST00000419181 BRK1Q8WUW1 75 aa5.97□□□□□ -1.45
GTF3A-202ENST00000419181 KRTAP6-2Q3LI66 62 aa5.83□□□□□ -1.48
GTF3A-202ENST00000419181 KRTAP5-8O75690 187 aa5.65□□□□□ -1.5
GTF3A-202ENST00000419181 OBSCNQ5VST9 7968 aa5.63□□□□□ -1.51
GTF3A-202ENST00000419181 MT3P25713 68 aa5.62□□□□□ -1.51
GTF3A-202ENST00000419181 PMAIP1Q13794 54 aa5.61□□□□□ -1.51
GTF3A-202ENST00000419181 AHNAKQ09666 5890 aaKnown RBP5.43□□□□□ -1.54
GTF3A-202ENST00000419181 MUC5ACP98088 5654 aa5.43□□□□□ -1.54
GTF3A-202ENST00000419181 PRAC1Q96KF2 57 aa5.41□□□□□ -1.54
GTF3A-202ENST00000419181 MUC5BQ9HC84 5762 aaPredicted RBP5.4□□□□□ -1.54
GTF3A-202ENST00000419181 KRTAP5-1Q6L8H4 278 aa5.36□□□□□ -1.55
GTF3A-202ENST00000419181 PRO0628Q9UI54 55 aa5.23□□□□□ -1.57
GTF3A-202ENST00000419181 LCE1EQ5T753 118 aa5.16□□□□□ -1.58
GTF3A-202ENST00000419181 KTN1-AS1Q86SY8 53 aa5□□□□□ -1.61
GTF3A-202ENST00000419181 SVIPQ8NHG7 77 aa5□□□□□ -1.61
GTF3A-202ENST00000419181 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.91□□□□□ -1.62
GTF3A-202ENST00000419181 LCE1BQ5T7P3 118 aa4.84□□□□□ -1.63
GTF3A-202ENST00000419181 LCE1CQ5T751 118 aa4.79□□□□□ -1.64
GTF3A-202ENST00000419181 LCE3DQ9BYE3 92 aa4.7□□□□□ -1.66
GTF3A-202ENST00000419181 KRTAP5-11Q6L8G4 156 aa4.6□□□□□ -1.67
GTF3A-202ENST00000419181 A0A0A0MQY5 61 aa4.54□□□□□ -1.68
GTF3A-202ENST00000419181 LUZP6Q538Z0 58 aa4.54□□□□□ -1.68
GTF3A-202ENST00000419181 LCE3EQ5T5B0 92 aa4.44□□□□□ -1.7
GTF3A-202ENST00000419181 LCE1FQ5T754 118 aa4.18□□□□□ -1.74
GTF3A-202ENST00000419181 KRTAP4-4Q9BYR3 166 aa4.06□□□□□ -1.76
GTF3A-202ENST00000419181 KRTAP21-2Q3LI59 83 aa4.05□□□□□ -1.76
GTF3A-202ENST00000419181 PHGR1C9JFL3 82 aa3.79□□□□□ -1.8
GTF3A-202ENST00000419181 NDUFAF8A1L188 74 aa3.66□□□□□ -1.82
GTF3A-202ENST00000419181 MUC19Q7Z5P9 8384 aa3.46□□□□□ -1.86
GTF3A-202ENST00000419181 PRM1P04553 51 aa3.37□□□□□ -1.87
GTF3A-202ENST00000419181 INE1O15225 51 aa2.93□□□□□ -1.94
GTF3A-202ENST00000419181 KRTAP21-1Q3LI58 79 aa2.88□□□□□ -1.95
GTF3A-202ENST00000419181 MUC16Q8WXI7 14507 aa2.49□□□□□ -2.01
Retrieved 78 of 20,778 RNA–protein pairs in 112.3 ms