RNA–Protein interactions for RNA: ENST00000413987.1

SNHG3-201, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 1 (best)

Gene SNHG3, Length 2,201 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-201ENST00000413987 KRTAP6-3Q3LI67 103 aa3.58□□□□□ -1.84
SNHG3-201ENST00000413987 FCGBPQ9Y6R7 5405 aaPredicted RBP3.56□□□□□ -1.84
SNHG3-201ENST00000413987 LCE1DQ5T752 114 aa3.54□□□□□ -1.84
SNHG3-201ENST00000413987 KRTAP10-7P60409 375 aaPredicted RBP3.52□□□□□ -1.85
SNHG3-201ENST00000413987 KRTAP19-6Q3LI70 58 aa3.51□□□□□ -1.85
SNHG3-201ENST00000413987 KRTAP12-3P60328 96 aa3.5□□□□□ -1.85
SNHG3-201ENST00000413987 KRTAP12-4P60329 112 aa3.49□□□□□ -1.85
SNHG3-201ENST00000413987 LCE3EQ5T5B0 92 aa3.48□□□□□ -1.85
SNHG3-201ENST00000413987 CRCT1Q9UGL9 99 aa3.46□□□□□ -1.86
SNHG3-201ENST00000413987 LOC100996750A0A140TA64 210 aa3.46□□□□□ -1.86
SNHG3-201ENST00000413987 KRTAP4-6Q9BYQ5 205 aa3.46□□□□□ -1.86
SNHG3-201ENST00000413987 MACF1Q9UPN3 7388 aaKnown RBP3.45□□□□□ -1.86
SNHG3-201ENST00000413987 KRTAP4-8A0A0G2JLE6 195 aa3.43□□□□□ -1.86
SNHG3-201ENST00000413987 KRTAP4-8Q9BYQ9 185 aa3.43□□□□□ -1.86
SNHG3-201ENST00000413987 SYNE2Q8WXH0 6885 aaKnown RBP3.4□□□□□ -1.87
SNHG3-201ENST00000413987 KRTAP4-12Q9BQ66 201 aa3.34□□□□□ -1.87
SNHG3-201ENST00000413987 MUC12Q9UKN1 5478 aa3.32□□□□□ -1.88
SNHG3-201ENST00000413987 KRTAP19-5Q3LI72 72 aa3.28□□□□□ -1.88
SNHG3-201ENST00000413987 MDN1Q9NU22 5596 aa3.24□□□□□ -1.89
SNHG3-201ENST00000413987 LCE3DQ9BYE3 92 aa3.24□□□□□ -1.89
SNHG3-201ENST00000413987 KRTAP19-7Q3SYF9 63 aa3.24□□□□□ -1.89
SNHG3-201ENST00000413987 KRTAP2-3P0C7H8 128 aa3.23□□□□□ -1.89
SNHG3-201ENST00000413987 KRTAP2-4Q9BYR9 128 aa3.23□□□□□ -1.89
SNHG3-201ENST00000413987 KRTAP2-1Q9BYU5 128 aa3.23□□□□□ -1.89
SNHG3-201ENST00000413987 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.22□□□□□ -1.89
SNHG3-201ENST00000413987 SPRR2FQ96RM1 72 aa3.19□□□□□ -1.9
SNHG3-201ENST00000413987 MT1EP04732 61 aa3.17□□□□□ -1.9
SNHG3-201ENST00000413987 KRTAP9-6A8MVA2 160 aa3.15□□□□□ -1.91
SNHG3-201ENST00000413987 DSTQ03001 7570 aaKnown RBP3.12□□□□□ -1.91
SNHG3-201ENST00000413987 KRTAP4-7Q9BYR0 210 aa3.1□□□□□ -1.91
SNHG3-201ENST00000413987 KRTAP5-9P26371 169 aa3.09□□□□□ -1.91
SNHG3-201ENST00000413987 MT1LQ93083 61 aa3.09□□□□□ -1.91
SNHG3-201ENST00000413987 LCE3BQ5TA77 95 aa3.08□□□□□ -1.92
SNHG3-201ENST00000413987 KRTAP19-3Q7Z4W3 81 aa3.04□□□□□ -1.92
SNHG3-201ENST00000413987 KRTAP4-3Q9BYR4 195 aa3.03□□□□□ -1.92
SNHG3-201ENST00000413987 SPRR2EP22531 72 aa3.02□□□□□ -1.93
SNHG3-201ENST00000413987 SPRR2BP35325 72 aa3.02□□□□□ -1.93
SNHG3-201ENST00000413987 SPRR2AP35326 72 aa3.02□□□□□ -1.93
SNHG3-201ENST00000413987 MT1MQ8N339 61 aa2.99□□□□□ -1.93
SNHG3-201ENST00000413987 MT1GP13640 62 aa2.97□□□□□ -1.93
SNHG3-201ENST00000413987 NEBP20929 6669 aa2.95□□□□□ -1.94
SNHG3-201ENST00000413987 SPRR2DP22532 72 aa2.9□□□□□ -1.95
SNHG3-201ENST00000413987 KRTAP4-9Q9BYQ8 210 aa2.76□□□□□ -1.97
SNHG3-201ENST00000413987 MT1AP04731 61 aa2.7□□□□□ -1.98
SNHG3-201ENST00000413987 SYNE1Q8NF91 8797 aaKnown RBP2.7□□□□□ -1.98
SNHG3-201ENST00000413987 KRTAP20-1Q3LI63 56 aa2.68□□□□□ -1.98
SNHG3-201ENST00000413987 KRTAP5-5Q701N2 237 aaPredicted RBP2.68□□□□□ -1.98
SNHG3-201ENST00000413987 KRTAP4-2Q9BYR5 136 aa2.68□□□□□ -1.98
SNHG3-201ENST00000413987 KRTAP4-11Q9BYQ6 195 aa2.67□□□□□ -1.98
SNHG3-201ENST00000413987 KRTAP6-1Q3LI64 71 aa2.64□□□□□ -1.99
SNHG3-201ENST00000413987 PRM1P04553 51 aa2.6□□□□□ -1.99
SNHG3-201ENST00000413987 MT4P47944 62 aa2.59□□□□□ -1.99
SNHG3-201ENST00000413987 HMCN1Q96RW7 5635 aa2.57□□□□□ -2
SNHG3-201ENST00000413987 KRTAP5-4Q6L8H1 288 aa2.56□□□□□ -2
SNHG3-201ENST00000413987 KRTAP5-3Q6L8H2 238 aa2.52□□□□□ -2.01
SNHG3-201ENST00000413987 OBSCNQ5VST9 7968 aa2.52□□□□□ -2.01
SNHG3-201ENST00000413987 KRTAP6-2Q3LI66 62 aa2.45□□□□□ -2.02
SNHG3-201ENST00000413987 KRTAP20-2Q3LI61 65 aa2.44□□□□□ -2.02
SNHG3-201ENST00000413987 GPR98Q8WXG9 6306 aa2.37□□□□□ -2.03
SNHG3-201ENST00000413987 LCE1CQ5T751 118 aa2.36□□□□□ -2.03
SNHG3-201ENST00000413987 LCE1BQ5T7P3 118 aa2.36□□□□□ -2.03
SNHG3-201ENST00000413987 KRTAP5-2Q701N4 177 aa2.32□□□□□ -2.04
SNHG3-201ENST00000413987 AHNAK2Q8IVF2 5795 aa2.24□□□□□ -2.05
SNHG3-201ENST00000413987 KRTAP5-7Q6L8G8 165 aa2.13□□□□□ -2.07
SNHG3-201ENST00000413987 KRTAP5-10Q6L8G5 202 aa2.12□□□□□ -2.07
SNHG3-201ENST00000413987 KRTAP5-8O75690 187 aa2.05□□□□□ -2.08
SNHG3-201ENST00000413987 KRTAP5-1Q6L8H4 278 aa2.05□□□□□ -2.08
SNHG3-201ENST00000413987 MUC19Q7Z5P9 8384 aa2.02□□□□□ -2.09
SNHG3-201ENST00000413987 MUC5ACP98088 5654 aa2.01□□□□□ -2.09
SNHG3-201ENST00000413987 MUC5BQ9HC84 5762 aaPredicted RBP1.92□□□□□ -2.1
SNHG3-201ENST00000413987 AHNAKQ09666 5890 aaKnown RBP1.9□□□□□ -2.1
SNHG3-201ENST00000413987 KRTAP21-1Q3LI58 79 aa1.84□□□□□ -2.11
SNHG3-201ENST00000413987 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.82□□□□□ -2.12
SNHG3-201ENST00000413987 KRTAP5-11Q6L8G4 156 aa1.8□□□□□ -2.12
SNHG3-201ENST00000413987 KRTAP21-2Q3LI59 83 aa1.71□□□□□ -2.14
SNHG3-201ENST00000413987 KRTAP4-4Q9BYR3 166 aa1.62□□□□□ -2.15
SNHG3-201ENST00000413987 PHGR1C9JFL3 82 aa1.46□□□□□ -2.18
SNHG3-201ENST00000413987 MUC16Q8WXI7 14507 aa0.92□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 11.2 ms