RNA–Protein interactions for RNA: ENST00000409747.5

CBX3-203, Transcript of chromobox 3, humanhuman

TSL 1 (best) BASIC

Gene CBX3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-203ENST00000409747 LCE4AQ5TA78 99 aa5.23□□□□□ -1.57
CBX3-203ENST00000409747 MT1LQ93083 61 aa5.23□□□□□ -1.57
CBX3-203ENST00000409747 TNP1P09430 55 aa5.21□□□□□ -1.58
CBX3-203ENST00000409747 A8MU10 97 aa5.2□□□□□ -1.58
CBX3-203ENST00000409747 HMCN1Q96RW7 5635 aa5.19□□□□□ -1.58
CBX3-203ENST00000409747 LCE3AQ5TA76 89 aa5.18□□□□□ -1.58
CBX3-203ENST00000409747 C10orf95Q9H7T3 257 aa5.18□□□□□ -1.58
CBX3-203ENST00000409747 MT4P47944 62 aa5.16□□□□□ -1.58
CBX3-203ENST00000409747 PRR15LQ9BU68 103 aa5.13□□□□□ -1.59
CBX3-203ENST00000409747 ANAPC13Q9BS18 74 aa5.11□□□□□ -1.59
CBX3-203ENST00000409747 KRTAP4-11Q9BYQ6 195 aa5.09□□□□□ -1.59
CBX3-203ENST00000409747 KRTAP5-4Q6L8H1 288 aa5.09□□□□□ -1.6
CBX3-203ENST00000409747 KRTAP4-3Q9BYR4 195 aa5.08□□□□□ -1.6
CBX3-203ENST00000409747 KRTAP19-4Q3LI73 84 aa5.07□□□□□ -1.6
CBX3-203ENST00000409747 KRTAP5-3Q6L8H2 238 aa5.06□□□□□ -1.6
CBX3-203ENST00000409747 ATP5EP56381 51 aaPredicted RBP5.06□□□□□ -1.6
CBX3-203ENST00000409747 AHNAK2Q8IVF2 5795 aa5.03□□□□□ -1.6
CBX3-203ENST00000409747 KRTAP12-3P60328 96 aa5□□□□□ -1.61
CBX3-203ENST00000409747 LINC01558Q9Y6Z2 57 aa4.99□□□□□ -1.61
CBX3-203ENST00000409747 CCDC179H3BU77 68 aa4.97□□□□□ -1.61
CBX3-203ENST00000409747 UQCR11O14957 56 aa4.93□□□□□ -1.62
CBX3-203ENST00000409747 KRTAP5-10Q6L8G5 202 aa4.93□□□□□ -1.62
CBX3-203ENST00000409747 A0A0A0MQY5 61 aa4.88□□□□□ -1.63
CBX3-203ENST00000409747 KRTAP25-1Q3LHN0 102 aa4.85□□□□□ -1.63
CBX3-203ENST00000409747 TMEM258P61165 79 aa4.83□□□□□ -1.64
CBX3-203ENST00000409747 KRTAP5-5Q701N2 237 aaPredicted RBP4.82□□□□□ -1.64
CBX3-203ENST00000409747 KRTAP20-2Q3LI61 65 aa4.8□□□□□ -1.64
CBX3-203ENST00000409747 SPRR5A0A1B0GTR4 108 aa4.8□□□□□ -1.64
CBX3-203ENST00000409747 MIR22HGQ0VDD5 57 aa4.79□□□□□ -1.64
CBX3-203ENST00000409747 K7ERS5 55 aa4.78□□□□□ -1.64
CBX3-203ENST00000409747 KRTAP12-4P60329 112 aa4.77□□□□□ -1.65
CBX3-203ENST00000409747 KRTAP5-7Q6L8G8 165 aa4.77□□□□□ -1.65
CBX3-203ENST00000409747 V9GYY9 64 aa4.66□□□□□ -1.66
CBX3-203ENST00000409747 KRTAP15-1Q3LI76 137 aa4.63□□□□□ -1.67
CBX3-203ENST00000409747 PSPHP1O15172 72 aa4.6□□□□□ -1.67
CBX3-203ENST00000409747 SYNE1Q8NF91 8797 aaKnown RBP4.59□□□□□ -1.67
CBX3-203ENST00000409747 LCE3CQ5T5A8 94 aa4.58□□□□□ -1.68
CBX3-203ENST00000409747 Q1T7F1 81 aa4.55□□□□□ -1.68
CBX3-203ENST00000409747 CDC42SE1Q9NRR8 79 aa4.49□□□□□ -1.69
CBX3-203ENST00000409747 MT1AP04731 61 aa4.46□□□□□ -1.69
CBX3-203ENST00000409747 A6NED7 52 aa4.46□□□□□ -1.7
CBX3-203ENST00000409747 PRO0628Q9UI54 55 aa4.45□□□□□ -1.7
CBX3-203ENST00000409747 KRTAP5-2Q701N4 177 aa4.43□□□□□ -1.7
CBX3-203ENST00000409747 KRTAP6-1Q3LI64 71 aa4.41□□□□□ -1.7
CBX3-203ENST00000409747 RPS28P62857 69 aaKnown RBP4.41□□□□□ -1.7
CBX3-203ENST00000409747 ROMO1P60602 79 aa4.38□□□□□ -1.71
CBX3-203ENST00000409747 KRTAP9-6A8MVA2 160 aa4.28□□□□□ -1.72
CBX3-203ENST00000409747 KRTAP5-8O75690 187 aa4.26□□□□□ -1.73
CBX3-203ENST00000409747 KRTAP6-2Q3LI66 62 aa4.26□□□□□ -1.73
CBX3-203ENST00000409747 PMAIP1Q13794 54 aa4.25□□□□□ -1.73
CBX3-203ENST00000409747 MUC5BQ9HC84 5762 aaPredicted RBP4.17□□□□□ -1.74
CBX3-203ENST00000409747 AHNAKQ09666 5890 aaKnown RBP4.17□□□□□ -1.74
CBX3-203ENST00000409747 MUC5ACP98088 5654 aa4.16□□□□□ -1.74
CBX3-203ENST00000409747 OBSCNQ5VST9 7968 aa4.11□□□□□ -1.75
CBX3-203ENST00000409747 MT3P25713 68 aa4.1□□□□□ -1.75
CBX3-203ENST00000409747 BRK1Q8WUW1 75 aa4.07□□□□□ -1.76
CBX3-203ENST00000409747 PRAC1Q96KF2 57 aa4.03□□□□□ -1.76
CBX3-203ENST00000409747 KTN1-AS1Q86SY8 53 aa3.99□□□□□ -1.77
CBX3-203ENST00000409747 KRTAP5-1Q6L8H4 278 aa3.98□□□□□ -1.77
CBX3-203ENST00000409747 LCE1EQ5T753 118 aa3.81□□□□□ -1.8
CBX3-203ENST00000409747 NDUFAF8A1L188 74 aa3.73□□□□□ -1.81
CBX3-203ENST00000409747 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.59□□□□□ -1.83
CBX3-203ENST00000409747 LUZP6Q538Z0 58 aa3.58□□□□□ -1.84
CBX3-203ENST00000409747 LCE1BQ5T7P3 118 aa3.57□□□□□ -1.84
CBX3-203ENST00000409747 LCE1CQ5T751 118 aa3.53□□□□□ -1.84
CBX3-203ENST00000409747 KRTAP5-11Q6L8G4 156 aa3.42□□□□□ -1.86
CBX3-203ENST00000409747 LCE1FQ5T754 118 aa3.29□□□□□ -1.88
CBX3-203ENST00000409747 LCE3DQ9BYE3 92 aa3.29□□□□□ -1.88
CBX3-203ENST00000409747 LCE3EQ5T5B0 92 aa3.07□□□□□ -1.92
CBX3-203ENST00000409747 KRTAP4-4Q9BYR3 166 aa2.99□□□□□ -1.93
CBX3-203ENST00000409747 KRTAP21-2Q3LI59 83 aa2.91□□□□□ -1.94
CBX3-203ENST00000409747 PHGR1C9JFL3 82 aa2.89□□□□□ -1.95
CBX3-203ENST00000409747 INE1O15225 51 aa2.74□□□□□ -1.97
CBX3-203ENST00000409747 MUC19Q7Z5P9 8384 aa2.52□□□□□ -2.01
CBX3-203ENST00000409747 KRTAP21-1Q3LI58 79 aa2.22□□□□□ -2.05
CBX3-203ENST00000409747 PRM1P04553 51 aa2.21□□□□□ -2.06
CBX3-203ENST00000409747 MUC16Q8WXI7 14507 aa1.77□□□□□ -2.13
Retrieved 77 of 20,778 RNA–protein pairs in 73 ms