RNA–Protein interactions for RNA: ENST00000397901.7

CHMP1A-201, Transcript of charged multivesicular body protein 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP1A, Length 2,483 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-201ENST00000397901 MT1LQ93083 61 aa5.43□□□□□ -1.54
CHMP1A-201ENST00000397901 MT1EP04732 61 aa5.41□□□□□ -1.54
CHMP1A-201ENST00000397901 KRTAP9-6A0A140TA67 174 aa5.4□□□□□ -1.55
CHMP1A-201ENST00000397901 FCGBPQ9Y6R7 5405 aaPredicted RBP5.37□□□□□ -1.55
CHMP1A-201ENST00000397901 KRTAP19-4Q3LI73 84 aa5.33□□□□□ -1.56
CHMP1A-201ENST00000397901 MACF1Q9UPN3 7388 aaKnown RBP5.27□□□□□ -1.57
CHMP1A-201ENST00000397901 SYNE2Q8WXH0 6885 aaKnown RBP5.23□□□□□ -1.57
CHMP1A-201ENST00000397901 LOC100996750A0A140TA64 210 aa5.22□□□□□ -1.57
CHMP1A-201ENST00000397901 KRTAP4-3Q9BYR4 195 aa5.21□□□□□ -1.57
CHMP1A-201ENST00000397901 KRTAP12-4P60329 112 aa5.15□□□□□ -1.58
CHMP1A-201ENST00000397901 MT1GP13640 62 aa5.14□□□□□ -1.59
CHMP1A-201ENST00000397901 MUC12Q9UKN1 5478 aa5.11□□□□□ -1.59
CHMP1A-201ENST00000397901 KRTAP19-3Q7Z4W3 81 aa5.07□□□□□ -1.6
CHMP1A-201ENST00000397901 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.05□□□□□ -1.6
CHMP1A-201ENST00000397901 MT1MQ8N339 61 aa5.05□□□□□ -1.6
CHMP1A-201ENST00000397901 SPRR2FQ96RM1 72 aa4.97□□□□□ -1.61
CHMP1A-201ENST00000397901 LCE5AQ5TCM9 118 aa4.94□□□□□ -1.62
CHMP1A-201ENST00000397901 DSTQ03001 7570 aaKnown RBP4.93□□□□□ -1.62
CHMP1A-201ENST00000397901 KRTAP9-7A8MTY7 169 aa4.91□□□□□ -1.62
CHMP1A-201ENST00000397901 MDN1Q9NU22 5596 aa4.84□□□□□ -1.63
CHMP1A-201ENST00000397901 LCE3BQ5TA77 95 aa4.81□□□□□ -1.64
CHMP1A-201ENST00000397901 KRTAP5-9P26371 169 aa4.77□□□□□ -1.65
CHMP1A-201ENST00000397901 KRTAP4-9Q9BYQ8 210 aa4.76□□□□□ -1.65
CHMP1A-201ENST00000397901 KRTAP6-3Q3LI67 103 aa4.73□□□□□ -1.65
CHMP1A-201ENST00000397901 SYNE1Q8NF91 8797 aaKnown RBP4.71□□□□□ -1.66
CHMP1A-201ENST00000397901 LCE1AQ5T7P2 110 aa4.71□□□□□ -1.66
CHMP1A-201ENST00000397901 MT1AP04731 61 aa4.67□□□□□ -1.66
CHMP1A-201ENST00000397901 KRTAP6-1Q3LI64 71 aa4.64□□□□□ -1.67
CHMP1A-201ENST00000397901 PRM1P04553 51 aa4.63□□□□□ -1.67
CHMP1A-201ENST00000397901 SPRR2EP22531 72 aa4.59□□□□□ -1.67
CHMP1A-201ENST00000397901 SPRR2BP35325 72 aa4.59□□□□□ -1.67
CHMP1A-201ENST00000397901 SPRR2AP35326 72 aa4.59□□□□□ -1.67
CHMP1A-201ENST00000397901 KRTAP5-5Q701N2 237 aaPredicted RBP4.58□□□□□ -1.68
CHMP1A-201ENST00000397901 LCE3EQ5T5B0 92 aa4.57□□□□□ -1.68
CHMP1A-201ENST00000397901 LCE3DQ9BYE3 92 aa4.57□□□□□ -1.68
CHMP1A-201ENST00000397901 NEBP20929 6669 aa4.56□□□□□ -1.68
CHMP1A-201ENST00000397901 SPRR2DP22532 72 aa4.4□□□□□ -1.7
CHMP1A-201ENST00000397901 KRTAP2-2Q9BYT5 123 aa4.38□□□□□ -1.71
CHMP1A-201ENST00000397901 KRTAP6-2Q3LI66 62 aa4.3□□□□□ -1.72
CHMP1A-201ENST00000397901 KRTAP20-1Q3LI63 56 aa4.28□□□□□ -1.72
CHMP1A-201ENST00000397901 KRTAP9-4Q9BYQ2 154 aa4.26□□□□□ -1.73
CHMP1A-201ENST00000397901 OBSCNQ5VST9 7968 aa4.21□□□□□ -1.74
CHMP1A-201ENST00000397901 KRTAP5-4Q6L8H1 288 aa4.09□□□□□ -1.75
CHMP1A-201ENST00000397901 MT3P25713 68 aa4.06□□□□□ -1.76
CHMP1A-201ENST00000397901 LCE1EQ5T753 118 aa3.96□□□□□ -1.78
CHMP1A-201ENST00000397901 MT4P47944 62 aa3.91□□□□□ -1.78
CHMP1A-201ENST00000397901 KRTAP4-6Q9BYQ5 205 aa3.89□□□□□ -1.79
CHMP1A-201ENST00000397901 LCE4AQ5TA78 99 aa3.87□□□□□ -1.79
CHMP1A-201ENST00000397901 HMCN1Q96RW7 5635 aa3.85□□□□□ -1.79
CHMP1A-201ENST00000397901 LCE1DQ5T752 114 aa3.84□□□□□ -1.8
CHMP1A-201ENST00000397901 KRTAP20-2Q3LI61 65 aa3.82□□□□□ -1.8
CHMP1A-201ENST00000397901 KRTAP5-2Q701N4 177 aa3.79□□□□□ -1.8
CHMP1A-201ENST00000397901 KRTAP5-3Q6L8H2 238 aa3.67□□□□□ -1.82
CHMP1A-201ENST00000397901 MUC5ACP98088 5654 aa3.52□□□□□ -1.85
CHMP1A-201ENST00000397901 AHNAK2Q8IVF2 5795 aa3.44□□□□□ -1.86
CHMP1A-201ENST00000397901 GPR98Q8WXG9 6306 aa3.44□□□□□ -1.86
CHMP1A-201ENST00000397901 KRTAP4-11Q9BYQ6 195 aa3.43□□□□□ -1.86
CHMP1A-201ENST00000397901 LCE1BQ5T7P3 118 aa3.34□□□□□ -1.87
CHMP1A-201ENST00000397901 KRTAP5-10Q6L8G5 202 aa3.33□□□□□ -1.88
CHMP1A-201ENST00000397901 LCE1FQ5T754 118 aa3.3□□□□□ -1.88
CHMP1A-201ENST00000397901 KRTAP4-12Q9BQ66 201 aa3.26□□□□□ -1.89
CHMP1A-201ENST00000397901 KRTAP5-1Q6L8H4 278 aa3.24□□□□□ -1.89
CHMP1A-201ENST00000397901 KRTAP4-2Q9BYR5 136 aa3.21□□□□□ -1.9
CHMP1A-201ENST00000397901 LCE1CQ5T751 118 aa3.19□□□□□ -1.9
CHMP1A-201ENST00000397901 KRTAP9-9Q9BYP9 154 aa3.16□□□□□ -1.9
CHMP1A-201ENST00000397901 KRTAP5-8O75690 187 aa3.11□□□□□ -1.91
CHMP1A-201ENST00000397901 KRTAP5-7Q6L8G8 165 aa3.09□□□□□ -1.91
CHMP1A-201ENST00000397901 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.02□□□□□ -1.93
CHMP1A-201ENST00000397901 KRTAP21-1Q3LI58 79 aa3□□□□□ -1.93
CHMP1A-201ENST00000397901 KRTAP21-2Q3LI59 83 aa2.96□□□□□ -1.94
CHMP1A-201ENST00000397901 MUC5BQ9HC84 5762 aaPredicted RBP2.92□□□□□ -1.94
CHMP1A-201ENST00000397901 KRTAP4-4Q9BYR3 166 aa2.81□□□□□ -1.96
CHMP1A-201ENST00000397901 KRTAP5-11Q6L8G4 156 aa2.77□□□□□ -1.97
CHMP1A-201ENST00000397901 MUC19Q7Z5P9 8384 aa2.74□□□□□ -1.97
CHMP1A-201ENST00000397901 AHNAKQ09666 5890 aaKnown RBP2.67□□□□□ -1.98
CHMP1A-201ENST00000397901 PHGR1C9JFL3 82 aa2.39□□□□□ -2.03
CHMP1A-201ENST00000397901 MUC16Q8WXI7 14507 aa1.59□□□□□ -2.15
Retrieved 77 of 20,778 RNA–protein pairs in 8.7 ms