RNA–Protein interactions for RNA: ENST00000396096.6

NUP50-202, Transcript of nucleoporin 50, humanhuman

TSL 1 (best) BASIC

Gene NUP50, Length 1,895 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-202ENST00000396096 KRTAP9-6A0A140TA67 174 aa5.71□□□□□ -1.5
NUP50-202ENST00000396096 INE1O15225 51 aa5.65□□□□□ -1.5
NUP50-202ENST00000396096 KRTAP2-3P0C7H8 128 aa5.6□□□□□ -1.51
NUP50-202ENST00000396096 KRTAP19-3Q7Z4W3 81 aa5.6□□□□□ -1.51
NUP50-202ENST00000396096 KRTAP2-4Q9BYR9 128 aa5.6□□□□□ -1.51
NUP50-202ENST00000396096 KRTAP2-1Q9BYU5 128 aa5.6□□□□□ -1.51
NUP50-202ENST00000396096 MT1GP13640 62 aa5.59□□□□□ -1.51
NUP50-202ENST00000396096 MACF1Q9UPN3 7388 aaKnown RBP5.57□□□□□ -1.52
NUP50-202ENST00000396096 MT1MQ8N339 61 aa5.56□□□□□ -1.52
NUP50-202ENST00000396096 KRTAP4-3Q9BYR4 195 aa5.49□□□□□ -1.53
NUP50-202ENST00000396096 SYNE2Q8WXH0 6885 aaKnown RBP5.47□□□□□ -1.53
NUP50-202ENST00000396096 LCE5AQ5TCM9 118 aa5.46□□□□□ -1.54
NUP50-202ENST00000396096 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.45□□□□□ -1.54
NUP50-202ENST00000396096 SPRR2FQ96RM1 72 aa5.45□□□□□ -1.54
NUP50-202ENST00000396096 MUC12Q9UKN1 5478 aa5.42□□□□□ -1.54
NUP50-202ENST00000396096 LOC100996750A0A140TA64 210 aa5.41□□□□□ -1.54
NUP50-202ENST00000396096 KRTAP5-9P26371 169 aa5.27□□□□□ -1.57
NUP50-202ENST00000396096 KRTAP6-3Q3LI67 103 aa5.25□□□□□ -1.57
NUP50-202ENST00000396096 KRTAP9-7A8MTY7 169 aa5.2□□□□□ -1.58
NUP50-202ENST00000396096 LCE1AQ5T7P2 110 aa5.17□□□□□ -1.58
NUP50-202ENST00000396096 MDN1Q9NU22 5596 aa5.14□□□□□ -1.59
NUP50-202ENST00000396096 SPRR2EP22531 72 aa5.04□□□□□ -1.6
NUP50-202ENST00000396096 SPRR2BP35325 72 aa5.04□□□□□ -1.6
NUP50-202ENST00000396096 SPRR2AP35326 72 aa5.04□□□□□ -1.6
NUP50-202ENST00000396096 DSTQ03001 7570 aaKnown RBP5.02□□□□□ -1.61
NUP50-202ENST00000396096 MT1AP04731 61 aa5□□□□□ -1.61
NUP50-202ENST00000396096 NEBP20929 6669 aa4.99□□□□□ -1.61
NUP50-202ENST00000396096 KRTAP5-5Q701N2 237 aaPredicted RBP4.98□□□□□ -1.61
NUP50-202ENST00000396096 KRTAP6-1Q3LI64 71 aa4.96□□□□□ -1.61
NUP50-202ENST00000396096 LCE3BQ5TA77 95 aa4.93□□□□□ -1.62
NUP50-202ENST00000396096 SPRR2DP22532 72 aa4.84□□□□□ -1.63
NUP50-202ENST00000396096 KRTAP12-4P60329 112 aa4.82□□□□□ -1.64
NUP50-202ENST00000396096 KRTAP4-9Q9BYQ8 210 aa4.75□□□□□ -1.65
NUP50-202ENST00000396096 KRTAP9-4Q9BYQ2 154 aa4.71□□□□□ -1.66
NUP50-202ENST00000396096 KRTAP4-6Q9BYQ5 205 aa4.71□□□□□ -1.66
NUP50-202ENST00000396096 SYNE1Q8NF91 8797 aaKnown RBP4.66□□□□□ -1.66
NUP50-202ENST00000396096 LCE3DQ9BYE3 92 aa4.64□□□□□ -1.67
NUP50-202ENST00000396096 KRTAP20-1Q3LI63 56 aa4.58□□□□□ -1.68
NUP50-202ENST00000396096 LCE3EQ5T5B0 92 aa4.58□□□□□ -1.68
NUP50-202ENST00000396096 KRTAP5-4Q6L8H1 288 aa4.52□□□□□ -1.69
NUP50-202ENST00000396096 KRTAP2-2Q9BYT5 123 aa4.5□□□□□ -1.69
NUP50-202ENST00000396096 MT3P25713 68 aa4.49□□□□□ -1.69
NUP50-202ENST00000396096 KRTAP6-2Q3LI66 62 aa4.48□□□□□ -1.69
NUP50-202ENST00000396096 LCE4AQ5TA78 99 aa4.3□□□□□ -1.72
NUP50-202ENST00000396096 MT4P47944 62 aa4.24□□□□□ -1.73
NUP50-202ENST00000396096 PRM1P04553 51 aa4.22□□□□□ -1.73
NUP50-202ENST00000396096 LCE1DQ5T752 114 aa4.2□□□□□ -1.74
NUP50-202ENST00000396096 KRTAP20-2Q3LI61 65 aa4.2□□□□□ -1.74
NUP50-202ENST00000396096 KRTAP5-2Q701N4 177 aa4.2□□□□□ -1.74
NUP50-202ENST00000396096 KRTAP4-12Q9BQ66 201 aa4.15□□□□□ -1.74
NUP50-202ENST00000396096 HMCN1Q96RW7 5635 aa4.15□□□□□ -1.75
NUP50-202ENST00000396096 OBSCNQ5VST9 7968 aa4.07□□□□□ -1.76
NUP50-202ENST00000396096 KRTAP5-3Q6L8H2 238 aa4.04□□□□□ -1.76
NUP50-202ENST00000396096 KRTAP9-9Q9BYP9 154 aa4.03□□□□□ -1.76
NUP50-202ENST00000396096 LCE1EQ5T753 118 aa3.79□□□□□ -1.8
NUP50-202ENST00000396096 AHNAK2Q8IVF2 5795 aa3.75□□□□□ -1.81
NUP50-202ENST00000396096 KRTAP4-2Q9BYR5 136 aa3.67□□□□□ -1.82
NUP50-202ENST00000396096 MUC5ACP98088 5654 aa3.65□□□□□ -1.82
NUP50-202ENST00000396096 KRTAP4-11Q9BYQ6 195 aa3.62□□□□□ -1.83
NUP50-202ENST00000396096 KRTAP5-10Q6L8G5 202 aa3.6□□□□□ -1.83
NUP50-202ENST00000396096 LCE1BQ5T7P3 118 aa3.56□□□□□ -1.84
NUP50-202ENST00000396096 LCE1CQ5T751 118 aa3.55□□□□□ -1.84
NUP50-202ENST00000396096 KRTAP5-1Q6L8H4 278 aa3.55□□□□□ -1.84
NUP50-202ENST00000396096 GPR98Q8WXG9 6306 aa3.53□□□□□ -1.84
NUP50-202ENST00000396096 KRTAP5-8O75690 187 aa3.47□□□□□ -1.85
NUP50-202ENST00000396096 KRTAP5-7Q6L8G8 165 aa3.39□□□□□ -1.87
NUP50-202ENST00000396096 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.38□□□□□ -1.87
NUP50-202ENST00000396096 KRTAP21-2Q3LI59 83 aa3.25□□□□□ -1.89
NUP50-202ENST00000396096 KRTAP5-11Q6L8G4 156 aa3.09□□□□□ -1.92
NUP50-202ENST00000396096 MUC5BQ9HC84 5762 aaPredicted RBP3.02□□□□□ -1.93
NUP50-202ENST00000396096 AHNAKQ09666 5890 aaKnown RBP2.87□□□□□ -1.95
NUP50-202ENST00000396096 KRTAP4-4Q9BYR3 166 aa2.84□□□□□ -1.95
NUP50-202ENST00000396096 KRTAP21-1Q3LI58 79 aa2.69□□□□□ -1.98
NUP50-202ENST00000396096 PHGR1C9JFL3 82 aa2.65□□□□□ -1.99
NUP50-202ENST00000396096 LCE1FQ5T754 118 aa2.64□□□□□ -1.99
NUP50-202ENST00000396096 MUC19Q7Z5P9 8384 aa2.45□□□□□ -2.02
NUP50-202ENST00000396096 MUC16Q8WXI7 14507 aa1.77□□□□□ -2.13
Retrieved 77 of 20,778 RNA–protein pairs in 72.6 ms