RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 CRCT1Q9UGL9 99 aa1.18□□□□□ -2.22
VPS13C-203ENST00000395896 KMT2DO14686 5537 aa1.18□□□□□ -2.22
VPS13C-203ENST00000395896 KRTAP19-3Q7Z4W3 81 aa1.18□□□□□ -2.22
VPS13C-203ENST00000395896 KRTAP9-6A0A140TA67 174 aa1.17□□□□□ -2.22
VPS13C-203ENST00000395896 MT1EP04732 61 aa1.16□□□□□ -2.22
VPS13C-203ENST00000395896 LCE1AQ5T7P2 110 aa1.15□□□□□ -2.22
VPS13C-203ENST00000395896 KRTAP9-2Q9BYQ4 174 aa1.15□□□□□ -2.23
VPS13C-203ENST00000395896 MUC12Q9UKN1 5478 aa1.15□□□□□ -2.23
VPS13C-203ENST00000395896 KRTAP4-8A0A0G2JLE6 195 aa1.14□□□□□ -2.23
VPS13C-203ENST00000395896 KRTAP4-8Q9BYQ9 185 aa1.14□□□□□ -2.23
VPS13C-203ENST00000395896 KRTAP19-7Q3SYF9 63 aa1.14□□□□□ -2.23
VPS13C-203ENST00000395896 KRTAP12-4P60329 112 aa1.14□□□□□ -2.23
VPS13C-203ENST00000395896 SPRR2EP22531 72 aa1.11□□□□□ -2.23
VPS13C-203ENST00000395896 SPRR2BP35325 72 aa1.11□□□□□ -2.23
VPS13C-203ENST00000395896 SPRR2AP35326 72 aa1.11□□□□□ -2.23
VPS13C-203ENST00000395896 MT1MQ8N339 61 aa1.11□□□□□ -2.23
VPS13C-203ENST00000395896 SSPOA2VEC9 5147 aa1.1□□□□□ -2.23
VPS13C-203ENST00000395896 SPRR2DP22532 72 aa1.09□□□□□ -2.23
VPS13C-203ENST00000395896 NEBP20929 6669 aa1.09□□□□□ -2.24
VPS13C-203ENST00000395896 LCE5AQ5TCM9 118 aa1.09□□□□□ -2.24
VPS13C-203ENST00000395896 KRTAP6-3Q3LI67 103 aa1.08□□□□□ -2.24
VPS13C-203ENST00000395896 KRTAP20-1Q3LI63 56 aa1.08□□□□□ -2.24
VPS13C-203ENST00000395896 KRTAP5-9P26371 169 aa1.07□□□□□ -2.24
VPS13C-203ENST00000395896 KRTAP9-7A8MTY7 169 aa1.07□□□□□ -2.24
VPS13C-203ENST00000395896 LCE3DQ9BYE3 92 aa1.05□□□□□ -2.24
VPS13C-203ENST00000395896 KRTAP2-3P0C7H8 128 aa1.04□□□□□ -2.24
VPS13C-203ENST00000395896 KRTAP2-4Q9BYR9 128 aa1.04□□□□□ -2.24
VPS13C-203ENST00000395896 KRTAP2-1Q9BYU5 128 aa1.04□□□□□ -2.24
VPS13C-203ENST00000395896 LCE3EQ5T5B0 92 aa1.03□□□□□ -2.24
VPS13C-203ENST00000395896 GPR98Q8WXG9 6306 aa1.02□□□□□ -2.25
VPS13C-203ENST00000395896 MT1AP04731 61 aa1.02□□□□□ -2.25
VPS13C-203ENST00000395896 LCE3BQ5TA77 95 aa1.02□□□□□ -2.25
VPS13C-203ENST00000395896 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.02□□□□□ -2.25
VPS13C-203ENST00000395896 KRTAP4-7Q9BYR0 210 aa1□□□□□ -2.25
VPS13C-203ENST00000395896 KRTAP9-6A8MVA2 160 aa1□□□□□ -2.25
VPS13C-203ENST00000395896 LCE4AQ5TA78 99 aa1□□□□□ -2.25
VPS13C-203ENST00000395896 KRTAP2-2Q9BYT5 123 aa0.97□□□□□ -2.25
VPS13C-203ENST00000395896 LOC100996750A0A140TA64 210 aa0.94□□□□□ -2.26
VPS13C-203ENST00000395896 KRTAP4-3Q9BYR4 195 aa0.94□□□□□ -2.26
VPS13C-203ENST00000395896 KRTAP9-4Q9BYQ2 154 aa0.93□□□□□ -2.26
VPS13C-203ENST00000395896 KRTAP6-1Q3LI64 71 aa0.92□□□□□ -2.26
VPS13C-203ENST00000395896 MUC19Q7Z5P9 8384 aa0.91□□□□□ -2.26
VPS13C-203ENST00000395896 AHNAK2Q8IVF2 5795 aa0.91□□□□□ -2.26
VPS13C-203ENST00000395896 MT4P47944 62 aa0.9□□□□□ -2.27
VPS13C-203ENST00000395896 HMCN1Q96RW7 5635 aa0.89□□□□□ -2.27
VPS13C-203ENST00000395896 KRTAP6-2Q3LI66 62 aa0.88□□□□□ -2.27
VPS13C-203ENST00000395896 KRTAP5-5Q701N2 237 aaPredicted RBP0.88□□□□□ -2.27
VPS13C-203ENST00000395896 MUC5ACP98088 5654 aa0.87□□□□□ -2.27
VPS13C-203ENST00000395896 LCE1EQ5T753 118 aa0.85□□□□□ -2.27
VPS13C-203ENST00000395896 KRTAP5-4Q6L8H1 288 aa0.85□□□□□ -2.27
VPS13C-203ENST00000395896 KRTAP4-9Q9BYQ8 210 aa0.85□□□□□ -2.27
VPS13C-203ENST00000395896 LCE1DQ5T752 114 aa0.85□□□□□ -2.27
VPS13C-203ENST00000395896 PRM1P04553 51 aa0.84□□□□□ -2.27
VPS13C-203ENST00000395896 KRTAP20-2Q3LI61 65 aa0.83□□□□□ -2.28
VPS13C-203ENST00000395896 KRTAP9-9Q9BYP9 154 aa0.82□□□□□ -2.28
VPS13C-203ENST00000395896 LCE1BQ5T7P3 118 aa0.81□□□□□ -2.28
VPS13C-203ENST00000395896 KRTAP4-6Q9BYQ5 205 aa0.8□□□□□ -2.28
VPS13C-203ENST00000395896 MUC5BQ9HC84 5762 aaPredicted RBP0.79□□□□□ -2.28
VPS13C-203ENST00000395896 KRTAP4-11Q9BYQ6 195 aa0.77□□□□□ -2.29
VPS13C-203ENST00000395896 KRTAP5-2Q701N4 177 aa0.77□□□□□ -2.29
VPS13C-203ENST00000395896 LCE1CQ5T751 118 aa0.76□□□□□ -2.29
VPS13C-203ENST00000395896 LCE1FQ5T754 118 aa0.76□□□□□ -2.29
VPS13C-203ENST00000395896 AHNAKQ09666 5890 aaKnown RBP0.76□□□□□ -2.29
VPS13C-203ENST00000395896 KRTAP4-2Q9BYR5 136 aa0.76□□□□□ -2.29
VPS13C-203ENST00000395896 KRTAP5-3Q6L8H2 238 aa0.74□□□□□ -2.29
VPS13C-203ENST00000395896 KRTAP5-8O75690 187 aa0.7□□□□□ -2.3
VPS13C-203ENST00000395896 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.67□□□□□ -2.3
VPS13C-203ENST00000395896 KRTAP5-11Q6L8G4 156 aa0.65□□□□□ -2.3
VPS13C-203ENST00000395896 KRTAP5-10Q6L8G5 202 aa0.65□□□□□ -2.31
VPS13C-203ENST00000395896 KRTAP5-1Q6L8H4 278 aa0.64□□□□□ -2.31
VPS13C-203ENST00000395896 KRTAP5-7Q6L8G8 165 aa0.64□□□□□ -2.31
VPS13C-203ENST00000395896 PHGR1C9JFL3 82 aa0.6□□□□□ -2.31
VPS13C-203ENST00000395896 KRTAP21-2Q3LI59 83 aa0.58□□□□□ -2.32
VPS13C-203ENST00000395896 KRTAP4-4Q9BYR3 166 aa0.58□□□□□ -2.32
VPS13C-203ENST00000395896 KRTAP4-12Q9BQ66 201 aa0.52□□□□□ -2.33
VPS13C-203ENST00000395896 KRTAP21-1Q3LI58 79 aa0.49□□□□□ -2.33
VPS13C-203ENST00000395896 MUC16Q8WXI7 14507 aa0.38□□□□□ -2.35
Retrieved 77 of 20,778 RNA–protein pairs in 46.1 ms