RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 MT1LQ93083 61 aa8.44□□□□□ -1.06
SHMT1-204ENST00000395682 PP632Q6XCG6 107 aa8.43□□□□□ -1.06
SHMT1-204ENST00000395682 MT1MQ8N339 61 aa8.37□□□□□ -1.07
SHMT1-204ENST00000395682 K7ERS5 55 aa8.35□□□□□ -1.07
SHMT1-204ENST00000395682 KRTAP12-3P60328 96 aa8.26□□□□□ -1.09
SHMT1-204ENST00000395682 KRTAP25-1Q3LHN0 102 aa8.26□□□□□ -1.09
SHMT1-204ENST00000395682 KRTAP4-3Q9BYR4 195 aa8.19□□□□□ -1.1
SHMT1-204ENST00000395682 A6NED7 52 aa8.17□□□□□ -1.1
SHMT1-204ENST00000395682 KRTAP4-9Q9BYQ8 210 aa8.16□□□□□ -1.1
SHMT1-204ENST00000395682 LOC100996750A0A140TA64 210 aa8.11□□□□□ -1.11
SHMT1-204ENST00000395682 PCP4P48539 62 aa8.11□□□□□ -1.11
SHMT1-204ENST00000395682 RPS28P62857 69 aaKnown RBP8.11□□□□□ -1.11
SHMT1-204ENST00000395682 KRTAP4-6Q9BYQ5 205 aa8.11□□□□□ -1.11
SHMT1-204ENST00000395682 KRTAP4-7Q9BYR0 210 aa8.05□□□□□ -1.12
SHMT1-204ENST00000395682 LCE4AQ5TA78 99 aa8□□□□□ -1.13
SHMT1-204ENST00000395682 LCE1DQ5T752 114 aa7.96□□□□□ -1.14
SHMT1-204ENST00000395682 KRTAP23-1A1A580 65 aa7.95□□□□□ -1.14
SHMT1-204ENST00000395682 MT4P47944 62 aa7.92□□□□□ -1.14
SHMT1-204ENST00000395682 CDC42SE1Q9NRR8 79 aa7.91□□□□□ -1.14
SHMT1-204ENST00000395682 KRTAP5-4Q6L8H1 288 aa7.88□□□□□ -1.15
SHMT1-204ENST00000395682 ROMO1P60602 79 aa7.81□□□□□ -1.16
SHMT1-204ENST00000395682 HMCN1Q96RW7 5635 aa7.79□□□□□ -1.16
SHMT1-204ENST00000395682 KRTAP19-4Q3LI73 84 aa7.79□□□□□ -1.16
SHMT1-204ENST00000395682 GPR98Q8WXG9 6306 aa7.79□□□□□ -1.16
SHMT1-204ENST00000395682 KRTAP15-1Q3LI76 137 aa7.77□□□□□ -1.17
SHMT1-204ENST00000395682 KRTAP5-5Q701N2 237 aaPredicted RBP7.64□□□□□ -1.19
SHMT1-204ENST00000395682 LCE3CQ5T5A8 94 aa7.63□□□□□ -1.19
SHMT1-204ENST00000395682 KRTAP12-4P60329 112 aa7.44□□□□□ -1.22
SHMT1-204ENST00000395682 AHNAK2Q8IVF2 5795 aa7.44□□□□□ -1.22
SHMT1-204ENST00000395682 KRTAP20-2Q3LI61 65 aa7.43□□□□□ -1.22
SHMT1-204ENST00000395682 SPRR5A0A1B0GTR4 108 aa7.41□□□□□ -1.22
SHMT1-204ENST00000395682 KRTAP5-10Q6L8G5 202 aa7.32□□□□□ -1.24
SHMT1-204ENST00000395682 SYNE1Q8NF91 8797 aaKnown RBP7.27□□□□□ -1.25
SHMT1-204ENST00000395682 KRTAP4-12Q9BQ66 201 aa7.24□□□□□ -1.25
SHMT1-204ENST00000395682 KRTAP5-3Q6L8H2 238 aa7.21□□□□□ -1.26
SHMT1-204ENST00000395682 KRTAP9-6A8MVA2 160 aa7.19□□□□□ -1.26
SHMT1-204ENST00000395682 MT1AP04731 61 aa7.17□□□□□ -1.26
SHMT1-204ENST00000395682 BRK1Q8WUW1 75 aa7.14□□□□□ -1.27
SHMT1-204ENST00000395682 KRTAP6-1Q3LI64 71 aa7.13□□□□□ -1.27
SHMT1-204ENST00000395682 KRTAP5-7Q6L8G8 165 aa7.01□□□□□ -1.29
SHMT1-204ENST00000395682 KRTAP9-9Q9BYP9 154 aa6.97□□□□□ -1.29
SHMT1-204ENST00000395682 KRTAP9-4Q9BYQ2 154 aa6.97□□□□□ -1.29
SHMT1-204ENST00000395682 KRTAP5-2Q701N4 177 aa6.92□□□□□ -1.3
SHMT1-204ENST00000395682 KRTAP6-2Q3LI66 62 aa6.8□□□□□ -1.32
SHMT1-204ENST00000395682 KRTAP4-11Q9BYQ6 195 aa6.76□□□□□ -1.33
SHMT1-204ENST00000395682 PMAIP1Q13794 54 aa6.73□□□□□ -1.33
SHMT1-204ENST00000395682 H3BS24 57 aa6.67□□□□□ -1.34
SHMT1-204ENST00000395682 MT3P25713 68 aa6.57□□□□□ -1.36
SHMT1-204ENST00000395682 KRTAP5-8O75690 187 aa6.52□□□□□ -1.37
SHMT1-204ENST00000395682 PRAC1Q96KF2 57 aa6.46□□□□□ -1.38
SHMT1-204ENST00000395682 OBSCNQ5VST9 7968 aa6.42□□□□□ -1.38
SHMT1-204ENST00000395682 KRTAP4-2Q9BYR5 136 aa6.3□□□□□ -1.4
SHMT1-204ENST00000395682 PRO0628Q9UI54 55 aa6.27□□□□□ -1.41
SHMT1-204ENST00000395682 KRTAP5-1Q6L8H4 278 aa6.19□□□□□ -1.42
SHMT1-204ENST00000395682 MUC5BQ9HC84 5762 aaPredicted RBP6.1□□□□□ -1.43
SHMT1-204ENST00000395682 AHNAKQ09666 5890 aaKnown RBP6.07□□□□□ -1.44
SHMT1-204ENST00000395682 MUC5ACP98088 5654 aa6.07□□□□□ -1.44
SHMT1-204ENST00000395682 LCE1EQ5T753 118 aa5.98□□□□□ -1.45
SHMT1-204ENST00000395682 KTN1-AS1Q86SY8 53 aa5.98□□□□□ -1.45
SHMT1-204ENST00000395682 SVIPQ8NHG7 77 aa5.75□□□□□ -1.49
SHMT1-204ENST00000395682 LCE1BQ5T7P3 118 aa5.65□□□□□ -1.5
SHMT1-204ENST00000395682 LCE1CQ5T751 118 aa5.55□□□□□ -1.52
SHMT1-204ENST00000395682 LCE3DQ9BYE3 92 aa5.53□□□□□ -1.52
SHMT1-204ENST00000395682 LUZP6Q538Z0 58 aa5.45□□□□□ -1.54
SHMT1-204ENST00000395682 LCE3EQ5T5B0 92 aa5.23□□□□□ -1.57
SHMT1-204ENST00000395682 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.06□□□□□ -1.6
SHMT1-204ENST00000395682 KRTAP5-11Q6L8G4 156 aa5□□□□□ -1.61
SHMT1-204ENST00000395682 LCE1FQ5T754 118 aa4.84□□□□□ -1.63
SHMT1-204ENST00000395682 KRTAP21-2Q3LI59 83 aa4.7□□□□□ -1.66
SHMT1-204ENST00000395682 NDUFAF8A1L188 74 aa4.43□□□□□ -1.7
SHMT1-204ENST00000395682 PHGR1C9JFL3 82 aa4.33□□□□□ -1.72
SHMT1-204ENST00000395682 KRTAP4-4Q9BYR3 166 aa4.31□□□□□ -1.72
SHMT1-204ENST00000395682 PRM1P04553 51 aa4□□□□□ -1.77
SHMT1-204ENST00000395682 MUC19Q7Z5P9 8384 aa3.96□□□□□ -1.78
SHMT1-204ENST00000395682 A0A0A0MQY5 61 aa3.73□□□□□ -1.81
SHMT1-204ENST00000395682 INE1O15225 51 aa3.55□□□□□ -1.84
SHMT1-204ENST00000395682 KRTAP21-1Q3LI58 79 aa3.23□□□□□ -1.89
SHMT1-204ENST00000395682 MUC16Q8WXI7 14507 aa2.82□□□□□ -1.96
Retrieved 78 of 20,778 RNA–protein pairs in 41.4 ms