RNA–Protein interactions for RNA: ENST00000394888.8

CPSF7-202, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

APPRIS P4 TSL 2 BASIC

Gene CPSF7, Length 3,650 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-202ENST00000394888 KRTAP2-1Q9BYU5 128 aa5.24□□□□□ -1.57
CPSF7-202ENST00000394888 KRTAP4-3Q9BYR4 195 aa5.18□□□□□ -1.58
CPSF7-202ENST00000394888 KRTAP19-4Q3LI73 84 aa5.17□□□□□ -1.58
CPSF7-202ENST00000394888 LOC100996750A0A140TA64 210 aa5.12□□□□□ -1.59
CPSF7-202ENST00000394888 MT1MQ8N339 61 aa5.07□□□□□ -1.6
CPSF7-202ENST00000394888 MACF1Q9UPN3 7388 aaKnown RBP5.06□□□□□ -1.6
CPSF7-202ENST00000394888 INE1O15225 51 aa5.05□□□□□ -1.6
CPSF7-202ENST00000394888 KRTAP19-3Q7Z4W3 81 aa5.04□□□□□ -1.6
CPSF7-202ENST00000394888 LCE5AQ5TCM9 118 aa4.99□□□□□ -1.61
CPSF7-202ENST00000394888 MT1GP13640 62 aa4.98□□□□□ -1.61
CPSF7-202ENST00000394888 MDN1Q9NU22 5596 aa4.9□□□□□ -1.62
CPSF7-202ENST00000394888 DSTQ03001 7570 aaKnown RBP4.88□□□□□ -1.63
CPSF7-202ENST00000394888 SYNE2Q8WXH0 6885 aaKnown RBP4.87□□□□□ -1.63
CPSF7-202ENST00000394888 SPRR2FQ96RM1 72 aa4.82□□□□□ -1.64
CPSF7-202ENST00000394888 KRTAP5-9P26371 169 aa4.75□□□□□ -1.65
CPSF7-202ENST00000394888 KRTAP9-2Q9BYQ4 174 aa4.74□□□□□ -1.65
CPSF7-202ENST00000394888 LCE1AQ5T7P2 110 aa4.69□□□□□ -1.66
CPSF7-202ENST00000394888 CRCT1Q9UGL9 99 aa4.68□□□□□ -1.66
CPSF7-202ENST00000394888 KRTAP5-5Q701N2 237 aaPredicted RBP4.67□□□□□ -1.66
CPSF7-202ENST00000394888 KRTAP6-1Q3LI64 71 aa4.61□□□□□ -1.67
CPSF7-202ENST00000394888 KRTAP4-9Q9BYQ8 210 aa4.52□□□□□ -1.69
CPSF7-202ENST00000394888 LCE3BQ5TA77 95 aa4.51□□□□□ -1.69
CPSF7-202ENST00000394888 MT1AP04731 61 aa4.5□□□□□ -1.69
CPSF7-202ENST00000394888 KRTAP12-4P60329 112 aa4.41□□□□□ -1.7
CPSF7-202ENST00000394888 SPRR2EP22531 72 aa4.41□□□□□ -1.7
CPSF7-202ENST00000394888 SPRR2BP35325 72 aa4.41□□□□□ -1.7
CPSF7-202ENST00000394888 SPRR2AP35326 72 aa4.41□□□□□ -1.7
CPSF7-202ENST00000394888 SYNE1Q8NF91 8797 aaKnown RBP4.37□□□□□ -1.71
CPSF7-202ENST00000394888 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.3□□□□□ -1.72
CPSF7-202ENST00000394888 KRTAP6-3Q3LI67 103 aa4.27□□□□□ -1.73
CPSF7-202ENST00000394888 KRTAP9-4Q9BYQ2 154 aa4.27□□□□□ -1.73
CPSF7-202ENST00000394888 SPRR2DP22532 72 aa4.22□□□□□ -1.73
CPSF7-202ENST00000394888 LCE3DQ9BYE3 92 aa4.17□□□□□ -1.74
CPSF7-202ENST00000394888 KRTAP5-4Q6L8H1 288 aa4.14□□□□□ -1.75
CPSF7-202ENST00000394888 KRTAP9-7A8MTY7 169 aa4.11□□□□□ -1.75
CPSF7-202ENST00000394888 KRTAP6-2Q3LI66 62 aa4.1□□□□□ -1.75
CPSF7-202ENST00000394888 LCE3EQ5T5B0 92 aa4.1□□□□□ -1.75
CPSF7-202ENST00000394888 NEBP20929 6669 aa4.09□□□□□ -1.75
CPSF7-202ENST00000394888 KRTAP9-6A0A140TA67 174 aa4.06□□□□□ -1.76
CPSF7-202ENST00000394888 MT3P25713 68 aa3.93□□□□□ -1.78
CPSF7-202ENST00000394888 PRM1P04553 51 aa3.92□□□□□ -1.78
CPSF7-202ENST00000394888 KRTAP4-6Q9BYQ5 205 aa3.92□□□□□ -1.78
CPSF7-202ENST00000394888 KRTAP5-2Q701N4 177 aa3.86□□□□□ -1.79
CPSF7-202ENST00000394888 OBSCNQ5VST9 7968 aa3.81□□□□□ -1.8
CPSF7-202ENST00000394888 HMCN1Q96RW7 5635 aa3.81□□□□□ -1.8
CPSF7-202ENST00000394888 KRTAP20-2Q3LI61 65 aa3.79□□□□□ -1.8
CPSF7-202ENST00000394888 MT4P47944 62 aa3.72□□□□□ -1.81
CPSF7-202ENST00000394888 KRTAP5-3Q6L8H2 238 aa3.72□□□□□ -1.81
CPSF7-202ENST00000394888 LCE4AQ5TA78 99 aa3.69□□□□□ -1.82
CPSF7-202ENST00000394888 LCE1DQ5T752 114 aa3.64□□□□□ -1.83
CPSF7-202ENST00000394888 KRTAP20-1Q3LI63 56 aa3.55□□□□□ -1.84
CPSF7-202ENST00000394888 MUC5ACP98088 5654 aa3.54□□□□□ -1.84
CPSF7-202ENST00000394888 KRTAP2-2Q9BYT5 123 aa3.52□□□□□ -1.85
CPSF7-202ENST00000394888 LCE1EQ5T753 118 aa3.35□□□□□ -1.87
CPSF7-202ENST00000394888 KRTAP5-10Q6L8G5 202 aa3.33□□□□□ -1.88
CPSF7-202ENST00000394888 KRTAP5-1Q6L8H4 278 aa3.3□□□□□ -1.88
CPSF7-202ENST00000394888 KRTAP4-2Q9BYR5 136 aa3.29□□□□□ -1.88
CPSF7-202ENST00000394888 LCE1CQ5T751 118 aa3.2□□□□□ -1.9
CPSF7-202ENST00000394888 LCE1BQ5T7P3 118 aa3.2□□□□□ -1.9
CPSF7-202ENST00000394888 KRTAP4-11Q9BYQ6 195 aa3.11□□□□□ -1.91
CPSF7-202ENST00000394888 KRTAP5-8O75690 187 aa3.09□□□□□ -1.92
CPSF7-202ENST00000394888 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.08□□□□□ -1.92
CPSF7-202ENST00000394888 KRTAP5-7Q6L8G8 165 aa3.08□□□□□ -1.92
CPSF7-202ENST00000394888 AHNAK2Q8IVF2 5795 aa3.06□□□□□ -1.92
CPSF7-202ENST00000394888 KRTAP21-2Q3LI59 83 aa3.05□□□□□ -1.92
CPSF7-202ENST00000394888 KRTAP5-11Q6L8G4 156 aa2.77□□□□□ -1.97
CPSF7-202ENST00000394888 MUC5BQ9HC84 5762 aaPredicted RBP2.75□□□□□ -1.97
CPSF7-202ENST00000394888 KRTAP4-4Q9BYR3 166 aa2.66□□□□□ -1.98
CPSF7-202ENST00000394888 KRTAP21-1Q3LI58 79 aa2.56□□□□□ -2
CPSF7-202ENST00000394888 KRTAP4-12Q9BQ66 201 aa2.55□□□□□ -2
CPSF7-202ENST00000394888 PHGR1C9JFL3 82 aa2.42□□□□□ -2.02
CPSF7-202ENST00000394888 GPR98Q8WXG9 6306 aa2.41□□□□□ -2.02
CPSF7-202ENST00000394888 KRTAP9-9Q9BYP9 154 aa2.4□□□□□ -2.03
CPSF7-202ENST00000394888 MUC19Q7Z5P9 8384 aa2.29□□□□□ -2.04
CPSF7-202ENST00000394888 LCE1FQ5T754 118 aa2.23□□□□□ -2.05
CPSF7-202ENST00000394888 AHNAKQ09666 5890 aaKnown RBP2.03□□□□□ -2.08
CPSF7-202ENST00000394888 MUC16Q8WXI7 14507 aa1.67□□□□□ -2.14
Retrieved 77 of 20,778 RNA–protein pairs in 13.5 ms