RNA–Protein interactions for RNA: ENST00000394611.6

RTN4-206, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,161 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-206ENST00000394611 MACF1Q9UPN3 7388 aaKnown RBP3.14□□□□□ -1.91
RTN4-206ENST00000394611 SYNE2Q8WXH0 6885 aaKnown RBP3.12□□□□□ -1.91
RTN4-206ENST00000394611 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.06□□□□□ -1.92
RTN4-206ENST00000394611 LOC100996750A0A140TA64 210 aa3.06□□□□□ -1.92
RTN4-206ENST00000394611 KRTAP9-6A8MVA2 160 aa3.06□□□□□ -1.92
RTN4-206ENST00000394611 MT1GP13640 62 aa3.05□□□□□ -1.92
RTN4-206ENST00000394611 MUC12Q9UKN1 5478 aa3.05□□□□□ -1.92
RTN4-206ENST00000394611 KRTAP12-4P60329 112 aa3.04□□□□□ -1.92
RTN4-206ENST00000394611 KRTAP4-3Q9BYR4 195 aa3.04□□□□□ -1.92
RTN4-206ENST00000394611 LCE3BQ5TA77 95 aa3.02□□□□□ -1.93
RTN4-206ENST00000394611 KRTAP9-7A8MTY7 169 aa2.95□□□□□ -1.94
RTN4-206ENST00000394611 KRTAP4-9Q9BYQ8 210 aa2.95□□□□□ -1.94
RTN4-206ENST00000394611 KRTAP6-3Q3LI67 103 aa2.91□□□□□ -1.94
RTN4-206ENST00000394611 SPRR2FQ96RM1 72 aa2.9□□□□□ -1.94
RTN4-206ENST00000394611 KRTAP5-9P26371 169 aa2.88□□□□□ -1.95
RTN4-206ENST00000394611 MDN1Q9NU22 5596 aa2.88□□□□□ -1.95
RTN4-206ENST00000394611 MT1LQ93083 61 aa2.87□□□□□ -1.95
RTN4-206ENST00000394611 KRTAP19-7Q3SYF9 63 aa2.86□□□□□ -1.95
RTN4-206ENST00000394611 MT1EP04732 61 aa2.82□□□□□ -1.96
RTN4-206ENST00000394611 NEBP20929 6669 aa2.8□□□□□ -1.96
RTN4-206ENST00000394611 SPRR2EP22531 72 aa2.79□□□□□ -1.96
RTN4-206ENST00000394611 SPRR2BP35325 72 aa2.79□□□□□ -1.96
RTN4-206ENST00000394611 SPRR2AP35326 72 aa2.79□□□□□ -1.96
RTN4-206ENST00000394611 LCE1AQ5T7P2 110 aa2.78□□□□□ -1.96
RTN4-206ENST00000394611 KRTAP2-3P0C7H8 128 aa2.78□□□□□ -1.97
RTN4-206ENST00000394611 KRTAP2-4Q9BYR9 128 aa2.78□□□□□ -1.97
RTN4-206ENST00000394611 KRTAP2-1Q9BYU5 128 aa2.78□□□□□ -1.97
RTN4-206ENST00000394611 PRM1P04553 51 aa2.73□□□□□ -1.97
RTN4-206ENST00000394611 KRTAP19-3Q7Z4W3 81 aa2.73□□□□□ -1.97
RTN4-206ENST00000394611 LCE5AQ5TCM9 118 aa2.7□□□□□ -1.98
RTN4-206ENST00000394611 LCE3DQ9BYE3 92 aa2.7□□□□□ -1.98
RTN4-206ENST00000394611 SPRR2DP22532 72 aa2.69□□□□□ -1.98
RTN4-206ENST00000394611 MUC19Q7Z5P9 8384 aa2.68□□□□□ -1.98
RTN4-206ENST00000394611 MT1MQ8N339 61 aa2.67□□□□□ -1.98
RTN4-206ENST00000394611 LCE3EQ5T5B0 92 aa2.63□□□□□ -1.99
RTN4-206ENST00000394611 KRTAP20-1Q3LI63 56 aa2.6□□□□□ -1.99
RTN4-206ENST00000394611 KRTAP6-1Q3LI64 71 aa2.54□□□□□ -2
RTN4-206ENST00000394611 KRTAP19-4Q3LI73 84 aa2.53□□□□□ -2
RTN4-206ENST00000394611 KRTAP2-2Q9BYT5 123 aa2.52□□□□□ -2.01
RTN4-206ENST00000394611 KRTAP6-2Q3LI66 62 aa2.46□□□□□ -2.02
RTN4-206ENST00000394611 KRTAP5-5Q701N2 237 aaPredicted RBP2.4□□□□□ -2.03
RTN4-206ENST00000394611 MT4P47944 62 aa2.37□□□□□ -2.03
RTN4-206ENST00000394611 KRTAP5-4Q6L8H1 288 aa2.36□□□□□ -2.03
RTN4-206ENST00000394611 LCE1EQ5T753 118 aa2.35□□□□□ -2.03
RTN4-206ENST00000394611 MT1AP04731 61 aa2.35□□□□□ -2.03
RTN4-206ENST00000394611 LCE4AQ5TA78 99 aa2.35□□□□□ -2.03
RTN4-206ENST00000394611 LCE1DQ5T752 114 aa2.34□□□□□ -2.04
RTN4-206ENST00000394611 KRTAP4-6Q9BYQ5 205 aa2.33□□□□□ -2.04
RTN4-206ENST00000394611 HMCN1Q96RW7 5635 aa2.32□□□□□ -2.04
RTN4-206ENST00000394611 LCE1BQ5T7P3 118 aa2.27□□□□□ -2.05
RTN4-206ENST00000394611 MT3P25713 68 aa2.26□□□□□ -2.05
RTN4-206ENST00000394611 KRTAP20-2Q3LI61 65 aa2.24□□□□□ -2.05
RTN4-206ENST00000394611 KRTAP9-4Q9BYQ2 154 aa2.21□□□□□ -2.05
RTN4-206ENST00000394611 KRTAP5-3Q6L8H2 238 aa2.16□□□□□ -2.06
RTN4-206ENST00000394611 KRTAP4-11Q9BYQ6 195 aa2.14□□□□□ -2.07
RTN4-206ENST00000394611 AHNAK2Q8IVF2 5795 aa2.12□□□□□ -2.07
RTN4-206ENST00000394611 KRTAP5-2Q701N4 177 aa2.11□□□□□ -2.07
RTN4-206ENST00000394611 MUC5ACP98088 5654 aa2.08□□□□□ -2.08
RTN4-206ENST00000394611 GPR98Q8WXG9 6306 aa2.07□□□□□ -2.08
RTN4-206ENST00000394611 KRTAP4-12Q9BQ66 201 aa2.06□□□□□ -2.08
RTN4-206ENST00000394611 KRTAP5-10Q6L8G5 202 aa2.02□□□□□ -2.09
RTN4-206ENST00000394611 KRTAP4-4Q9BYR3 166 aa1.93□□□□□ -2.1
RTN4-206ENST00000394611 KRTAP9-9Q9BYP9 154 aa1.92□□□□□ -2.1
RTN4-206ENST00000394611 KRTAP5-8O75690 187 aa1.91□□□□□ -2.1
RTN4-206ENST00000394611 KRTAP5-7Q6L8G8 165 aa1.88□□□□□ -2.11
RTN4-206ENST00000394611 KRTAP5-1Q6L8H4 278 aa1.87□□□□□ -2.11
RTN4-206ENST00000394611 LCE1FQ5T754 118 aa1.83□□□□□ -2.12
RTN4-206ENST00000394611 KRTAP4-2Q9BYR5 136 aa1.81□□□□□ -2.12
RTN4-206ENST00000394611 MUC5BQ9HC84 5762 aaPredicted RBP1.73□□□□□ -2.13
RTN4-206ENST00000394611 LCE1CQ5T751 118 aa1.72□□□□□ -2.13
RTN4-206ENST00000394611 AHNAKQ09666 5890 aaKnown RBP1.65□□□□□ -2.14
RTN4-206ENST00000394611 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.63□□□□□ -2.15
RTN4-206ENST00000394611 KRTAP5-11Q6L8G4 156 aa1.53□□□□□ -2.16
RTN4-206ENST00000394611 KRTAP21-2Q3LI59 83 aa1.51□□□□□ -2.17
RTN4-206ENST00000394611 KRTAP21-1Q3LI58 79 aa1.36□□□□□ -2.19
RTN4-206ENST00000394611 PHGR1C9JFL3 82 aa1.33□□□□□ -2.2
RTN4-206ENST00000394611 MUC16Q8WXI7 14507 aa0.82□□□□□ -2.28
Retrieved 77 of 20,778 RNA–protein pairs in 6.2 ms