RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 KRTAP4-7Q9BYR0 210 aa2.09□□□□□ -2.07
RFFL-202ENST00000394597 LCE1DQ5T752 114 aa2.08□□□□□ -2.08
RFFL-202ENST00000394597 LCE3CQ5T5A8 94 aa2.07□□□□□ -2.08
RFFL-202ENST00000394597 KRTAP19-4Q3LI73 84 aa2.06□□□□□ -2.08
RFFL-202ENST00000394597 KRTAP4-9Q9BYQ8 210 aa2.05□□□□□ -2.08
RFFL-202ENST00000394597 KRTAP4-2Q9BYR5 136 aa2.05□□□□□ -2.08
RFFL-202ENST00000394597 SPRR2FQ96RM1 72 aa2.04□□□□□ -2.08
RFFL-202ENST00000394597 KRTAP19-6Q3LI70 58 aa2.03□□□□□ -2.08
RFFL-202ENST00000394597 OBSCNQ5VST9 7968 aa2.02□□□□□ -2.09
RFFL-202ENST00000394597 USH2AO75445 5202 aa1.99□□□□□ -2.09
RFFL-202ENST00000394597 KRTAP4-11Q9BYQ6 195 aa1.99□□□□□ -2.09
RFFL-202ENST00000394597 KRTAP12-4P60329 112 aa1.98□□□□□ -2.09
RFFL-202ENST00000394597 LCE5AQ5TCM9 118 aa1.96□□□□□ -2.09
RFFL-202ENST00000394597 MT1GP13640 62 aa1.94□□□□□ -2.1
RFFL-202ENST00000394597 MT1EP04732 61 aa1.93□□□□□ -2.1
RFFL-202ENST00000394597 SYNE2Q8WXH0 6885 aaKnown RBP1.93□□□□□ -2.1
RFFL-202ENST00000394597 SPRR2EP22531 72 aa1.93□□□□□ -2.1
RFFL-202ENST00000394597 SPRR2BP35325 72 aa1.93□□□□□ -2.1
RFFL-202ENST00000394597 SPRR2AP35326 72 aa1.93□□□□□ -2.1
RFFL-202ENST00000394597 MT1LQ93083 61 aa1.92□□□□□ -2.1
RFFL-202ENST00000394597 SSPOA2VEC9 5147 aa1.91□□□□□ -2.1
RFFL-202ENST00000394597 KRTAP19-3Q7Z4W3 81 aa1.9□□□□□ -2.1
RFFL-202ENST00000394597 KRTAP19-7Q3SYF9 63 aa1.89□□□□□ -2.11
RFFL-202ENST00000394597 KRTAP2-3P0C7H8 128 aa1.87□□□□□ -2.11
RFFL-202ENST00000394597 KRTAP2-4Q9BYR9 128 aa1.87□□□□□ -2.11
RFFL-202ENST00000394597 KRTAP2-1Q9BYU5 128 aa1.87□□□□□ -2.11
RFFL-202ENST00000394597 SPRR2DP22532 72 aa1.86□□□□□ -2.11
RFFL-202ENST00000394597 MACF1Q9UPN3 7388 aaKnown RBP1.85□□□□□ -2.11
RFFL-202ENST00000394597 MT1MQ8N339 61 aa1.84□□□□□ -2.11
RFFL-202ENST00000394597 DSTQ03001 7570 aaKnown RBP1.83□□□□□ -2.12
RFFL-202ENST00000394597 KMT2DO14686 5537 aa1.81□□□□□ -2.12
RFFL-202ENST00000394597 KRTAP2-2Q9BYT5 123 aa1.8□□□□□ -2.12
RFFL-202ENST00000394597 KRTAP9-6A8MVA2 160 aa1.8□□□□□ -2.12
RFFL-202ENST00000394597 KRTAP6-3Q3LI67 103 aa1.79□□□□□ -2.12
RFFL-202ENST00000394597 KRTAP4-3Q9BYR4 195 aa1.79□□□□□ -2.12
RFFL-202ENST00000394597 FCGBPQ9Y6R7 5405 aaPredicted RBP1.79□□□□□ -2.12
RFFL-202ENST00000394597 LCE1FQ5T754 118 aa1.79□□□□□ -2.12
RFFL-202ENST00000394597 LCE3DQ9BYE3 92 aa1.77□□□□□ -2.13
RFFL-202ENST00000394597 PRM1P04553 51 aa1.76□□□□□ -2.13
RFFL-202ENST00000394597 LCE3EQ5T5B0 92 aa1.76□□□□□ -2.13
RFFL-202ENST00000394597 KRTAP5-3Q6L8H2 238 aa1.76□□□□□ -2.13
RFFL-202ENST00000394597 LCE1AQ5T7P2 110 aa1.76□□□□□ -2.13
RFFL-202ENST00000394597 LCE1EQ5T753 118 aa1.75□□□□□ -2.13
RFFL-202ENST00000394597 MUC12Q9UKN1 5478 aa1.74□□□□□ -2.13
RFFL-202ENST00000394597 KRTAP5-9P26371 169 aa1.69□□□□□ -2.14
RFFL-202ENST00000394597 MDN1Q9NU22 5596 aa1.68□□□□□ -2.14
RFFL-202ENST00000394597 MT4P47944 62 aa1.67□□□□□ -2.14
RFFL-202ENST00000394597 MT1AP04731 61 aa1.67□□□□□ -2.14
RFFL-202ENST00000394597 NEBP20929 6669 aa1.66□□□□□ -2.14
RFFL-202ENST00000394597 MUC19Q7Z5P9 8384 aa1.64□□□□□ -2.15
RFFL-202ENST00000394597 KRTAP20-1Q3LI63 56 aa1.64□□□□□ -2.15
RFFL-202ENST00000394597 MT3P25713 68 aa1.63□□□□□ -2.15
RFFL-202ENST00000394597 GPR98Q8WXG9 6306 aa1.63□□□□□ -2.15
RFFL-202ENST00000394597 KRTAP6-1Q3LI64 71 aa1.61□□□□□ -2.15
RFFL-202ENST00000394597 LCE1BQ5T7P3 118 aa1.6□□□□□ -2.15
RFFL-202ENST00000394597 KRTAP6-2Q3LI66 62 aa1.55□□□□□ -2.16
RFFL-202ENST00000394597 KRTAP5-5Q701N2 237 aaPredicted RBP1.45□□□□□ -2.18
RFFL-202ENST00000394597 HMCN1Q96RW7 5635 aa1.43□□□□□ -2.18
RFFL-202ENST00000394597 KRTAP20-2Q3LI61 65 aa1.41□□□□□ -2.18
RFFL-202ENST00000394597 KRTAP5-11Q6L8G4 156 aa1.4□□□□□ -2.19
RFFL-202ENST00000394597 KRTAP5-4Q6L8H1 288 aa1.37□□□□□ -2.19
RFFL-202ENST00000394597 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.37□□□□□ -2.19
RFFL-202ENST00000394597 LCE1CQ5T751 118 aa1.36□□□□□ -2.19
RFFL-202ENST00000394597 AHNAK2Q8IVF2 5795 aa1.33□□□□□ -2.2
RFFL-202ENST00000394597 KRTAP5-2Q701N4 177 aa1.23□□□□□ -2.21
RFFL-202ENST00000394597 MUC5ACP98088 5654 aa1.21□□□□□ -2.22
RFFL-202ENST00000394597 KRTAP5-1Q6L8H4 278 aa1.18□□□□□ -2.22
RFFL-202ENST00000394597 AHNAKQ09666 5890 aaKnown RBP1.15□□□□□ -2.22
RFFL-202ENST00000394597 KRTAP4-4Q9BYR3 166 aa1.15□□□□□ -2.23
RFFL-202ENST00000394597 KRTAP5-10Q6L8G5 202 aa1.15□□□□□ -2.23
RFFL-202ENST00000394597 MUC5BQ9HC84 5762 aaPredicted RBP1.12□□□□□ -2.23
RFFL-202ENST00000394597 KRTAP5-8O75690 187 aa1.09□□□□□ -2.23
RFFL-202ENST00000394597 KRTAP5-7Q6L8G8 165 aa1.07□□□□□ -2.24
RFFL-202ENST00000394597 KRTAP21-1Q3LI58 79 aa0.96□□□□□ -2.26
RFFL-202ENST00000394597 KRTAP21-2Q3LI59 83 aa0.96□□□□□ -2.26
RFFL-202ENST00000394597 PHGR1C9JFL3 82 aa0.85□□□□□ -2.27
RFFL-202ENST00000394597 MUC16Q8WXI7 14507 aa0.55□□□□□ -2.32
Retrieved 77 of 20,778 RNA–protein pairs in 5.8 ms