RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 KRTAP4-7Q9BYR0 210 aa8.67□□□□□ -1.02
SHOX2-201ENST00000389589 KRTAP19-3Q7Z4W3 81 aa8.63□□□□□ -1.03
SHOX2-201ENST00000389589 SPRR2FQ96RM1 72 aa8.61□□□□□ -1.03
SHOX2-201ENST00000389589 MT1GP13640 62 aa8.59□□□□□ -1.03
SHOX2-201ENST00000389589 MUC12Q9UKN1 5478 aa8.54□□□□□ -1.04
SHOX2-201ENST00000389589 KRTAP9-6A8MVA2 160 aa8.53□□□□□ -1.04
SHOX2-201ENST00000389589 SYNE2Q8WXH0 6885 aaKnown RBP8.52□□□□□ -1.05
SHOX2-201ENST00000389589 MT1MQ8N339 61 aa8.49□□□□□ -1.05
SHOX2-201ENST00000389589 KRTAP9-7A8MTY7 169 aa8.47□□□□□ -1.05
SHOX2-201ENST00000389589 LCE5AQ5TCM9 118 aa8.42□□□□□ -1.06
SHOX2-201ENST00000389589 KRTAP5-9P26371 169 aa8.4□□□□□ -1.06
SHOX2-201ENST00000389589 KRTAP4-3Q9BYR4 195 aa8.33□□□□□ -1.08
SHOX2-201ENST00000389589 A0A0A0MQY5 61 aa8.32□□□□□ -1.08
SHOX2-201ENST00000389589 KRTAP6-3Q3LI67 103 aa8.28□□□□□ -1.08
SHOX2-201ENST00000389589 LCE1AQ5T7P2 110 aa8.18□□□□□ -1.1
SHOX2-201ENST00000389589 LOC100996750A0A140TA64 210 aa8.13□□□□□ -1.11
SHOX2-201ENST00000389589 MDN1Q9NU22 5596 aa8.08□□□□□ -1.12
SHOX2-201ENST00000389589 SPRR2EP22531 72 aa8.08□□□□□ -1.12
SHOX2-201ENST00000389589 SPRR2BP35325 72 aa8.08□□□□□ -1.12
SHOX2-201ENST00000389589 SPRR2AP35326 72 aa8.08□□□□□ -1.12
SHOX2-201ENST00000389589 KRTAP2-3P0C7H8 128 aa8.06□□□□□ -1.12
SHOX2-201ENST00000389589 KRTAP2-4Q9BYR9 128 aa8.06□□□□□ -1.12
SHOX2-201ENST00000389589 KRTAP2-1Q9BYU5 128 aa8.06□□□□□ -1.12
SHOX2-201ENST00000389589 DSTQ03001 7570 aaKnown RBP7.89□□□□□ -1.15
SHOX2-201ENST00000389589 NEBP20929 6669 aa7.84□□□□□ -1.15
SHOX2-201ENST00000389589 SPRR2DP22532 72 aa7.78□□□□□ -1.16
SHOX2-201ENST00000389589 INE1O15225 51 aa7.72□□□□□ -1.17
SHOX2-201ENST00000389589 KRTAP5-5Q701N2 237 aaPredicted RBP7.61□□□□□ -1.19
SHOX2-201ENST00000389589 MT1AP04731 61 aa7.58□□□□□ -1.2
SHOX2-201ENST00000389589 KRTAP6-1Q3LI64 71 aa7.5□□□□□ -1.21
SHOX2-201ENST00000389589 KRTAP20-1Q3LI63 56 aa7.47□□□□□ -1.21
SHOX2-201ENST00000389589 LCE3BQ5TA77 95 aa7.43□□□□□ -1.22
SHOX2-201ENST00000389589 SYNE1Q8NF91 8797 aaKnown RBP7.19□□□□□ -1.26
SHOX2-201ENST00000389589 KRTAP2-2Q9BYT5 123 aa7.18□□□□□ -1.26
SHOX2-201ENST00000389589 KRTAP9-4Q9BYQ2 154 aa7.17□□□□□ -1.26
SHOX2-201ENST00000389589 KRTAP5-4Q6L8H1 288 aa7.1□□□□□ -1.27
SHOX2-201ENST00000389589 KRTAP12-4P60329 112 aa7□□□□□ -1.29
SHOX2-201ENST00000389589 KRTAP4-9Q9BYQ8 210 aa7□□□□□ -1.29
SHOX2-201ENST00000389589 LCE4AQ5TA78 99 aa6.91□□□□□ -1.3
SHOX2-201ENST00000389589 MT3P25713 68 aa6.86□□□□□ -1.31
SHOX2-201ENST00000389589 KRTAP6-2Q3LI66 62 aa6.85□□□□□ -1.31
SHOX2-201ENST00000389589 LCE3DQ9BYE3 92 aa6.85□□□□□ -1.31
SHOX2-201ENST00000389589 KRTAP4-6Q9BYQ5 205 aa6.8□□□□□ -1.32
SHOX2-201ENST00000389589 MT4P47944 62 aa6.73□□□□□ -1.33
SHOX2-201ENST00000389589 LCE3EQ5T5B0 92 aa6.7□□□□□ -1.34
SHOX2-201ENST00000389589 KRTAP20-2Q3LI61 65 aa6.63□□□□□ -1.35
SHOX2-201ENST00000389589 LCE1DQ5T752 114 aa6.56□□□□□ -1.36
SHOX2-201ENST00000389589 KRTAP5-2Q701N4 177 aa6.51□□□□□ -1.37
SHOX2-201ENST00000389589 HMCN1Q96RW7 5635 aa6.49□□□□□ -1.37
SHOX2-201ENST00000389589 KRTAP5-3Q6L8H2 238 aa6.37□□□□□ -1.39
SHOX2-201ENST00000389589 OBSCNQ5VST9 7968 aa6.25□□□□□ -1.41
SHOX2-201ENST00000389589 KRTAP4-12Q9BQ66 201 aa6.22□□□□□ -1.41
SHOX2-201ENST00000389589 PRM1P04553 51 aa6□□□□□ -1.45
SHOX2-201ENST00000389589 AHNAK2Q8IVF2 5795 aa5.98□□□□□ -1.45
SHOX2-201ENST00000389589 KRTAP9-9Q9BYP9 154 aa5.96□□□□□ -1.46
SHOX2-201ENST00000389589 GPR98Q8WXG9 6306 aa5.91□□□□□ -1.46
SHOX2-201ENST00000389589 LCE1EQ5T753 118 aa5.87□□□□□ -1.47
SHOX2-201ENST00000389589 KRTAP5-10Q6L8G5 202 aa5.79□□□□□ -1.48
SHOX2-201ENST00000389589 KRTAP4-11Q9BYQ6 195 aa5.66□□□□□ -1.5
SHOX2-201ENST00000389589 KRTAP5-1Q6L8H4 278 aa5.57□□□□□ -1.52
SHOX2-201ENST00000389589 MUC5ACP98088 5654 aa5.56□□□□□ -1.52
SHOX2-201ENST00000389589 LCE1BQ5T7P3 118 aa5.51□□□□□ -1.53
SHOX2-201ENST00000389589 LCE1CQ5T751 118 aa5.47□□□□□ -1.53
SHOX2-201ENST00000389589 KRTAP5-7Q6L8G8 165 aa5.47□□□□□ -1.53
SHOX2-201ENST00000389589 KRTAP4-2Q9BYR5 136 aa5.44□□□□□ -1.54
SHOX2-201ENST00000389589 KRTAP5-8O75690 187 aa5.43□□□□□ -1.54
SHOX2-201ENST00000389589 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.16□□□□□ -1.58
SHOX2-201ENST00000389589 KRTAP21-2Q3LI59 83 aa4.9□□□□□ -1.62
SHOX2-201ENST00000389589 MUC5BQ9HC84 5762 aaPredicted RBP4.88□□□□□ -1.63
SHOX2-201ENST00000389589 KRTAP5-11Q6L8G4 156 aa4.79□□□□□ -1.64
SHOX2-201ENST00000389589 AHNAKQ09666 5890 aaKnown RBP4.72□□□□□ -1.65
SHOX2-201ENST00000389589 KRTAP4-4Q9BYR3 166 aa4.33□□□□□ -1.72
SHOX2-201ENST00000389589 LCE1FQ5T754 118 aa4.23□□□□□ -1.73
SHOX2-201ENST00000389589 PHGR1C9JFL3 82 aa4.1□□□□□ -1.75
SHOX2-201ENST00000389589 KRTAP21-1Q3LI58 79 aa3.73□□□□□ -1.81
SHOX2-201ENST00000389589 MUC19Q7Z5P9 8384 aa3.65□□□□□ -1.82
SHOX2-201ENST00000389589 MUC16Q8WXI7 14507 aa2.71□□□□□ -1.97
Retrieved 77 of 20,778 RNA–protein pairs in 10.5 ms